Polarization spectroscopy methods in the determination of interactions of small molecules with nucleic acids – tutorial

Tamara Šmidlehner, Ivo Piantanida and Gennaro Pescitelli
Beilstein J. Org. Chem. 2018, 14, 84–105. https://doi.org/10.3762/bjoc.14.5

Cite the Following Article

Polarization spectroscopy methods in the determination of interactions of small molecules with nucleic acids – tutorial
Tamara Šmidlehner, Ivo Piantanida and Gennaro Pescitelli
Beilstein J. Org. Chem. 2018, 14, 84–105. https://doi.org/10.3762/bjoc.14.5

How to Cite

Šmidlehner, T.; Piantanida, I.; Pescitelli, G. Beilstein J. Org. Chem. 2018, 14, 84–105. doi:10.3762/bjoc.14.5

Download Citation

Citation data can be downloaded as file using the "Download" button or used for copy/paste from the text window below.
Citation data in RIS format can be imported by all major citation management software, including EndNote, ProCite, RefWorks, and Zotero.

Presentation Graphic

Picture with graphical abstract, title and authors for social media postings and presentations.
Format: PNG Size: 1.6 MB Download

Citations to This Article

Up to 20 of the most recent references are displayed here.

Scholarly Works

  • Li, H.; Hao, R.; Chen, G.; Wang, W.; Sheng, P.; Xu, J.; Liu, J.; Li, Y.; Kong, J.; Zhao, J. Optimization of the inverted "T"-shaped double-layer subwavelength grating design integrated on an InSb detector. Optics Communications 2024, 573, 131016. doi:10.1016/j.optcom.2024.131016
  • Adak, S.; Rahaman, S. A.; Karmakar, S.; Bandyopadhyay, S. An Emission-Based Probe for the Detection and Quantification of DNA and RNA. Chemistry, an Asian journal 2024, 19, e202400400. doi:10.1002/asia.202400400
  • Pavlović Saftić, D.; Krošl Knežević, I.; de Lera Garrido, F.; Tolosa, J.; Majhen, D.; Piantanida, I.; García Martínez, J. C. Trimeric and Tetrameric Cationic Styryl Dyes as Novel Fluorescence and CD Probes for ds-DNA and ds-RNA. International journal of molecular sciences 2024, 25, 5724. doi:10.3390/ijms25115724
  • Ge, Y.; Li, W.; Tian, J.; Yu, H.; Wang, Z.; Wang, M.; Dong, Z. Single-Stranded Nucleic Acid Transmembrane Molecular Carriers Based on Positively Charged Helical Foldamers. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 2024, 11, e2400678. doi:10.1002/advs.202400678
  • Matić, J.; Piotrowski, P.; Vrban, L.; Kobetić, R.; Vianello, R.; Jurić, I.; Fabijanić, I.; Pernar Kovač, M.; Brozovic, A.; Piantanida, I.; Schmuck, C.; Radić Stojković, M. Distinctive Nucleic Acid Recognition by Lysine-Embedded Phenanthridine Peptides. International journal of molecular sciences 2024, 25, 4866. doi:10.3390/ijms25094866
  • Schlosser, J.; Ihmels, H. Photocontrolled Binding of Styrylnaphthyridine Ligands to Abasic Site-Containing DNA by Reversible [2+2] Cycloaddition and Cycloreversion. Chemistry (Weinheim an der Bergstrasse, Germany) 2024, 30, e202400423. doi:10.1002/chem.202400423
  • Pavić, K.; Poje, G.; Pessanha de Carvalho, L.; Tandarić, T.; Marinović, M.; Fontinha, D.; Held, J.; Prudêncio, M.; Piantanida, I.; Vianello, R.; Krošl Knežević, I.; Perković, I.; Rajić, Z. Discovery of harmiprims, harmine-primaquine hybrids, as potent and selective anticancer and antimalarial compounds. Bioorganic & medicinal chemistry 2024, 105, 117734. doi:10.1016/j.bmc.2024.117734
  • Kumar, S.; Singh, U.; Baishya, B.; Ghosh, C.; Roy, P.; Nair, M. S. Biophysical and nuclear magnetic resonance spectroscopic studies of the binding of baicalein to DNA sequence d(CACGTG)2 and its cytotoxicity evaluation. Journal of Molecular Liquids 2024, 399, 124351. doi:10.1016/j.molliq.2024.124351
  • She, S.; Ha, Y.; Guo, Y.; Fan, Y.; Li, X.; Pu, M.; Zhao, K.; Wang, L.; Luo, X. Optimized optical catenary structures empower compact on-chip polarization detector. In Advanced Fiber Laser Conference (AFL2023), SPIE, 2024; pp 370 ff. doi:10.1117/12.3023699
  • Perin, N.; Gulin, M.; Kos, M.; Persoons, L.; Daelemans, D.; Fabijanić, I.; Stojković, M. R.; Hranjec, M. Synthesis and Biological Evaluation of Novel Amino and Amido Substituted Pentacyclic Benzimidazole Derivatives as Antiproliferative Agents. International journal of molecular sciences 2024, 25, 2288. doi:10.3390/ijms25042288
  • Schlosser, J.; Fedorova, O.; Fedorov, Y.; Ihmels, H. Photoinduced in situ generation of DNA-targeting ligands: DNA-binding and DNA-photodamaging properties of benzo[c]quinolizinium ions. Beilstein journal of organic chemistry 2024, 20, 101–117. doi:10.3762/bjoc.20.11
  • Khalid, K.; Ishak, R.; Chowdhury, Z. Z. UV–Vis spectroscopy in non-destructive testing. Non-Destructive Material Characterization Methods; Elsevier, 2024; pp 391–416. doi:10.1016/b978-0-323-91150-4.00021-5
  • Pavlović Saftić, D.; Ricker, R.; Mentzel, P.; Krebs, J.; Amini, H.; Lorenzen, S.; Schopper, N.; Kenđel, A.; Miljanić, S.; Morvan, J.; Mauduit, M.; Trolez, Y.; Piantanida, I.; Marder, T. B. Tetracationic bis-triarylborane tetraynes as dual fluorescence and SERS sensors for DNA, RNA and proteins. Microchemical Journal 2024, 196, 109665. doi:10.1016/j.microc.2023.109665
  • Groß, P.; Hoffmann, R. S.; Müller, M.; Schönherr, H.; Ihmels, H. 6‐Aryl‐Substituted Harmanium Derivatives as Light‐Up Probes for Fluorimetric DNA Detection and Staining of Eukaryotic Cells. ChemistryEurope 2023, 2. doi:10.1002/ceur.202300045
  • Groß, P.; Hoffmann, R. S.; Müller, M.; Schönherr, H.; Ihmels, H. Fluorimetric Cell Analysis with 9-Aryl-Substituted Berberine Derivatives as DNA-Targeting Fluorescent Probes. Chembiochem : a European journal of chemical biology 2023, 25, e202300761. doi:10.1002/cbic.202300761
  • Sviben, I.; Glavaš, M.; Erben, A.; Bachelart, T.; Pavlović Saftić, D.; Piantanida, I.; Basarić, N. Dipeptides Containing Pyrene and Modified Photochemically Reactive Tyrosine: Noncovalent and Covalent Binding to Polynucleotides. Molecules (Basel, Switzerland) 2023, 28, 7533. doi:10.3390/molecules28227533
  • Schlosser, J.; Stötzel, N.; Fedorov, Y.; Ihmels, H. Photoinduced Reactions of Styrylpyridine Derivatives for the In Situ Formation of Selective Ligands for Apyrimidinic DNA. ChemPhotoChem 2023, 7. doi:10.1002/cptc.202300159
  • Nikšić-Franjić, I.; Colasson, B.; Reinaud, O.; Višnjevac, A.; Piantanida, I.; Pavlović Saftić, D. Novel pyrene-calix[4]arene derivatives as highly sensitive sensors for nucleotides, DNA and RNA. RSC advances 2023, 13, 27423–27433. doi:10.1039/d3ra05696a
  • Jurković, M.; Ferger, M.; Drašković, I.; Marder, T. B.; Piantanida, I. Triarylborane-"Click" Fluorescent Tag for Orthogonal Amino Acid Labelling, Interactions with DNA, Protein, and Cyclodextrins. Pharmaceuticals (Basel, Switzerland) 2023, 16, 1208. doi:10.3390/ph16091208
  • Racané, L.; Zlatić, K.; Cindrić, M.; Mehić, E.; Karminski-Zamola, G.; Taylor, M. C.; Kelly, J. M.; Malić, S. R.; Stojković, M. R.; Kralj, M.; Hranjec, M. Synthesis and Biological Activity of 2-Benzo[b]thienyl and 2-Bithienyl Amidino-Substituted Benzothiazole and Benzimidazole Derivatives. ChemMedChem 2023, 18, e202300261. doi:10.1002/cmdc.202300261
Other Beilstein-Institut Open Science Activities