Computational tools for drawing, building and displaying carbohydrates: a visual guide

Scholarly Works

• Fogarty, C. A.; Ives, C. M.; Singh, O.; Fadda, E. Reconstructing Glycosylation: How to Rebuild Glycoproteins by Molecular Dynamics-generated 3D Libraries. Glycoprotein Analysis; Royal Society of Chemistry, 2024; pp 315–328. doi:10.1039/9781839166433-00315
• Nieto-Fabregat, F.; Lenza, M. P.; Marseglia, A.; Di Carluccio, C.; Molinaro, A.; Silipo, A.; Marchetti, R. Computational toolbox for the analysis of protein-glycan interactions. Beilstein journal of organic chemistry 2024, 20, 2084–2107. doi:10.3762/bjoc.20.180
• Altmann, F.; Helm, J.; Pabst, M.; Stadlmann, J. Introduction of a human- and keyboard-friendly N-glycan nomenclature. Beilstein journal of organic chemistry 2024, 20, 607–620. doi:10.3762/bjoc.20.53
• Cummings, R. D. A periodic table of monosaccharides. Glycobiology 2023, 34. doi:10.1093/glycob/cwad088
• Lundstrøm, J.; Urban, J.; Thomès, L.; Bojar, D. GlycoDraw: a python implementation for generating high-quality glycan figures. Glycobiology 2023, 33, 927–934. doi:10.1093/glycob/cwad063
• Costa, J.; Hayes, C.; Lisacek, F. Protein glycosylation and glycoinformatics for novel biomarker discovery in neurodegenerative diseases. Ageing research reviews 2023, 89, 101991. doi:10.1016/j.arr.2023.101991
• Lundstrøm, J.; Urban, J.; Thomès, L.; Bojar, D. GlycoDraw: A Python Implementation for Generating High-Quality Glycan Figures. Cold Spring Harbor Laboratory 2023. doi:10.1101/2023.05.20.541563
• Bojar, D.; Lisacek, F. Glycoinformatics in the Artificial Intelligence Era. Chemical reviews 2022, 122, 15971–15988. doi:10.1021/acs.chemrev.2c00110
• Feng, X.; Li, F.; Ding, M.; Zhang, R.; Shi, T.; Lu, Y.; Jiang, W. Molecular dynamic simulation: Study on the recognition mechanism of linear β-(1 → 3)-D-glucan by Dectin-1. Carbohydrate polymers 2022, 286, 119276. doi:10.1016/j.carbpol.2022.119276
• Aoki-Kinoshita, K. F.; Lisacek, F.; Karlsson, N.; Kolarich, D.; Packer, N. H. GlycoBioinformatics. Beilstein journal of organic chemistry 2021, 17, 2726–2728. doi:10.3762/bjoc.17.184
• Gerwig, G. J. Glycobioinformatics. Techniques in Life Science and Biomedicine for the Non-Expert; Springer International Publishing, 2021; pp 297–312. doi:10.1007/978-3-030-77791-3_13
• Bochkov, A. Y.; Toukach, P. V. CSDB/SNFG Structure Editor: An Online Glycan Builder with 2D and 3D Structure Visualization. Journal of chemical information and modeling 2021, 61, 4940–4948. doi:10.1021/acs.jcim.1c00917
• Lollier, V.; Fanuel, M.; Ropartz, D.; Tessier, D.; Rogniaux, H. Oligator: a flexible interface to draw oligosaccharide structures and generate their theoretical tandem mass spectra. Bioinformatics (Oxford, England) 2021, 37, 4261–4262. doi:10.1093/bioinformatics/btab412
• Feng, X.; Li, F.; Ding, M.; Zhang, R.; Shi, T.; Jiang, W. Molecular dynamic simulation: Structural insights of multi-stranded curdlan in aqueous solution. Carbohydrate polymers 2021, 261, 117844. doi:10.1016/j.carbpol.2021.117844
• Marchetti, R.; Forgione, R. E.; Fabregat, F. N.; Di Carluccio, C.; Molinaro, A.; Silipo, A. Solving the structural puzzle of bacterial glycome. Current opinion in structural biology 2021, 68, 74–83. doi:10.1016/j.sbi.2020.12.003
• Scherbinina, S. I.; Toukach, P. V. Three-Dimensional Structures of Carbohydrates and Where to Find Them. International journal of molecular sciences 2020, 21, 7702. doi:10.3390/ijms21207702

Explore citations to this article at