The use of glycoinformatics in glycochemistry

Scholarly Works

• Jayaprakash, N. G.; Sarkar, D. K.; Surolia, A. Atomic visualization of flipped-back conformations of high mannose glycans interacting with cargo lectins: An MD simulation perspective. Proteins 2023. doi:10.1002/prot.26556
• Bojar, D.; Lisacek, F. Glycoinformatics in the Artificial Intelligence Era. Chemical reviews 2022, 122, 15971–15988. doi:10.1021/acs.chemrev.2c00110
• Aggarwal, S.; Koser, K.; Chakravarty, A.; Ikram, S. Understanding how the substituents of polysaccharides influence physical properties. Innovation in Nano-Polysaccharides for Eco-sustainability; Elsevier, 2022; pp 119–132. doi:10.1016/b978-0-12-823439-6.00009-x
• Bonnardel, F.; Mariethoz, J.; Salentin, S.; Robin, X.; Schroeder, M.; Pérez, S.; Lisacek, F. D.; Imberty, A. UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligands. Nucleic acids research 2018, 47, D1236–D1244. doi:10.1093/nar/gky832
• Egorova, K. S.; Toukach, P. V. Carbohydrate Structure Database (CSDB): Examples of Usage. A Practical Guide to Using Glycomics Databases; Springer Japan, 2016; pp 75–113. doi:10.1007/978-4-431-56454-6_5
• Lütteke, T. Glycan Data Retrieval and Analysis Using GLYCOSCIENCES.de Applications. A Practical Guide to Using Glycomics Databases; Springer Japan, 2016; pp 335–350. doi:10.1007/978-4-431-56454-6_16
• Harvey, D. Analysis of Protein Post‐Translational Modifications by Mass Spectrometry; Wiley, 2016; pp 89–159. doi:10.1002/9781119250906.ch3
• Harvey, D. Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: An update for 2011-2012. Mass spectrometry reviews 2015, 36, 255–422. doi:10.1002/mas.21471
• Egorova, K. S.; Kalinchuk, N. A.; Knirel, Y. A.; Toukach, P. V. Carbohydrate Structure Database (CSDB): new features. Russian Chemical Bulletin 2015, 64, 1205–1210. doi:10.1007/s11172-015-1003-6
• Pérez, S.; Sarkar, A.; Rivet, A.; Breton, C.; Imberty, A. Glyco3D: a portal for structural glycosciences. Methods in molecular biology (Clifton, N.J.) 2015, 1273, 241–258. doi:10.1007/978-1-4939-2343-4_18
• Ranzinger, R.; Aoki-Kinoshita, K. F.; Campbell, M.; Kawano, S.; Lütteke, T.; Okuda, S.; Shinmachi, D.; Shikanai, T.; Sawaki, H.; Toukach, P. V.; Matsubara, M.; Yamada, I.; Narimatsu, H. GlycoRDF: an ontology to standardize glycomics data in RDF. Bioinformatics (Oxford, England) 2014, 31, 919–925. doi:10.1093/bioinformatics/btu732
• Lütteke, T. Problems and Pitfalls of Residue Notation in Glycoinformatics. Glycoscience: Biology and Medicine; Springer Japan, 2014; pp 251–257. doi:10.1007/978-4-431-54841-6_25
• Hofmann, J.; Struwe, W. B.; Scarff, C. A.; Scrivens, J. H.; Harvey, D.; Pagel, K. Estimating Collision Cross Sections of Negatively Charged N-Glycans using Traveling Wave Ion Mobility-Mass Spectrometry. Analytical chemistry 2014, 86, 10789–10795. doi:10.1021/ac5028353
• Lindhorst, T. K. Multivalent glycosystems for nanoscience. Beilstein journal of organic chemistry 2014, 10, 2345–2347. doi:10.3762/bjoc.10.244
• Kapaev, R. R.; Egorova, K. S.; Toukach, P. V. Carbohydrate Structure Generalization Scheme for Database-Driven Simulation of Experimental Observables, Such as NMR Chemical Shifts. Journal of chemical information and modeling 2014, 54, 2594–2611. doi:10.1021/ci500267u
• Lütteke, T. Problems and Pitfalls of Residue Notation in Glycoinformatics. Glycoscience: Biology and Medicine; Springer Japan, 2014; pp 1–7. doi:10.1007/978-4-431-54836-2_25-1
• Peach, M. L.; Zakharov, A. V.; Guasch, L.; Nicklaus, M. C. 6.09 – Chemoinformatics. Comprehensive Biomedical Physics; Elsevier, 2014; Vol. 6, pp 123–156. doi:10.1016/b978-0-444-53632-7.01111-4
• L€utteke, T.
• Egorova, K. S.; Toukach, P. V. Expansion of coverage of Carbohydrate Structure Database (CSDB). Carbohydrate research 2013, 389, 112–114. doi:10.1016/j.carres.2013.10.009
• Toukach, F. V.; Ananikov, V. P. Recent advances in computational predictions of NMR parameters for the structure elucidation of carbohydrates: methods and limitations. Chemical Society reviews 2013, 42, 8376–8415. doi:10.1039/c3cs60073d

Explore citations to this article at