Improved deconvolution of natural products’ protein targets using diagnostic ions from chemical proteomics linkers

• Andreas Wiest and
• Pavel Kielkowski

Beilstein J. Org. Chem. 2024, 20, 2323–2341, doi:10.3762/bjoc.20.199

• background from total protein present in the lysate. The detection can be done in several different ways. To obtain an overview of how many proteins are labeled in total and what is the intensity of the labeling, the probe–protein–tag conjugates are separated on sodium dodecyl sulfate polyacrylamide gel (SDS

Cell-free protein synthesis with technical additives – expanding the parameter space of in vitro gene expression

• Tabea Bartsch,
• Stephan Lütz and
• Katrin Rosenthal

Beilstein J. Org. Chem. 2024, 20, 2242–2253, doi:10.3762/bjoc.20.192

• [66]. Purity of the in vivo produced proteins was checked with sodium dodecyl sulfate polyacrylamide gel-electrophoresis (SDS-PAGE) [67]. Impurities were quantified with ImageJ [68] and measured protein concentrations corrected by the results to gain concentrations of pure sfGFP and thscGAS-sfGFP

The Groebke–Blackburn–Bienaymé reaction in its maturity: innovation and improvements since its 21st birthday (2019–2023)

• Cristina Martini,
• Muhammad Idham Darussalam Mardjan and
• Andrea Basso

Beilstein J. Org. Chem. 2024, 20, 1839–1879, doi:10.3762/bjoc.20.162

• scope of 8 GBB adducts was obtained (Scheme 6). Yamajala et al., in the last article discussed in the previous sub-chapter, also described the use of sodium dodecyl sulfate (SDS) as surfactant in GBB reactions performed in water, synthesizing 27 distinct imidazopyridines in 72–98% yield employing very

Discovery of antimicrobial peptides clostrisin and cellulosin from Clostridium: insights into their structures, co-localized biosynthetic gene clusters, and antibiotic activity

• Moisés Alejandro Alejo Hernandez,
• Katia Pamela Villavicencio Sánchez,
• Rosendo Sánchez Morales,
• Karla Georgina Hernández-Magro Gil,
• David Silverio Moreno-Gutiérrez,
• Eddie Guillermo Sanchez-Rueda,
• Yanet Teresa-Cruz,
• Brian Choi,
• Armando Hernández Garcia,
• Alba Romero-Rodríguez,
• Oscar Juárez,
• Siseth Martínez-Caballero,
• Mario Figueroa and
• Corina-Diana Ceapă

Beilstein J. Org. Chem. 2024, 20, 1800–1816, doi:10.3762/bjoc.20.159

• ). Purifications were monitored through 20% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) [51]. For HPLC-LC analysis no native purification was performed, for each pellet of 500 mL liquid culture induction of clostrisin and cellulosin lanthipeptides. The cell pellet was resuspended with 10

Development of a chemical scaffold for inhibiting nonribosomal peptide synthetases in live bacterial cells

• Fumihiro Ishikawa,
• Sho Konno,
• Hideaki Kakeya and
• Genzoh Tanabe

Beilstein J. Org. Chem. 2024, 20, 445–451, doi:10.3762/bjoc.20.39

• benzophenone moiety in probe 3. The samples were then reacted with TAMRA-N3 (structure shown in Figure S4, Supporting Information File 1) under copper(I)-catalyzed azide–alkyne cycloaddition conditions [21] and subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis coupled with in-gel

Green and sustainable approaches for the Friedel–Crafts reaction between aldehydes and indoles

• Periklis X. Kolagkis,
• Eirini M. Galathri and
• Christoforos G. Kokotos

Beilstein J. Org. Chem. 2024, 20, 379–426, doi:10.3762/bjoc.20.36

• surfactants with SiO2, thus, eliminating the drawback of poor recyclability exhibited by the surfactants [118]. Various different Lewis acid surfactants were screened for their catalytic activity in the synthesis of BIMs with the combination of AlCl3∙6H2O as the Lewis acid, sodium dodecyl sulfate (SDS) as the

Facile access to pyridinium-based bent aromatic amphiphiles: nonionic surface modification of nanocarbons in water

• Lorenzo Catti,
• Shinji Aoyama and
• Michito Yoshizawa

Beilstein J. Org. Chem. 2024, 20, 32–40, doi:10.3762/bjoc.20.5

• tighter and more adaptable aromatic–aromatic stacking interactions. The aliphatic amphiphile sodium dodecyl sulfate (SDS) showed a 10-times lower efficiency compared to PA-Im under the same conditions (Figure S38 in Supporting Information File 1). The concentration of C60 in the solution of (PA-Im)n·(C60

Biochemistry of fluoroprolines: the prospect of making fluorine a bioelement

• Vladimir Kubyshkin,
• Rebecca Davis and
• Nediljko Budisa

Beilstein J. Org. Chem. 2021, 17, 439–460, doi:10.3762/bjoc.17.40

¹⁹F NMR as a tool in chemical biology

• Diana Gimenez,
• Aoife Phelan,
• Cormac D. Murphy and
• Steven L. Cobb

Beilstein J. Org. Chem. 2021, 17, 293–318, doi:10.3762/bjoc.17.28

• several properties of a specifically 3-FTyr-labelled α-synuclein analogue, including its native conformation and the conformational changes induced by urea, spermine and sodium dodecyl sulfate (SDS) [75]. Subsequently, α-synuclein interaction with SDS micelles and model membranes have also been

Oxidative radical ring-opening/cyclization of cyclopropane derivatives

• Yu Liu,
• Qiao-Lin Wang,
• Zan Chen,
• Cong-Shan Zhou,
• Bi-Quan Xiong,
• Pan-Liang Zhang,
• Chang-An Yang and
• Quan Zhou

Beilstein J. Org. Chem. 2019, 15, 256–278, doi:10.3762/bjoc.15.23

• ring-opening and difluoromethylthiolation of cyclopropanols 91 with PhSO2SCF2H 142 for the synthesis of difluoromethylthioethers 143 was reported by Shen and co-workers (Scheme 38) [118]. AgNO3 was utilized as catalyst, K2S2O8 as oxidant, and SDS (sodium dodecyl sulfate) as addictive in water. The SDS

Green synthesis of new chiral 1-(arylamino)imidazo[2,1-a]isoindole-2,5-diones from the corresponding α-amino acid arylhydrazides in aqueous medium

• Nadia Bouzayani,
• Jamil Kraїem,
• Sylvain Marque,
• Yakdhane Kacem,
• Abel Carlin-Sinclair,
• Jérôme Marrot and
• Béchir Ben Hassine

Beilstein J. Org. Chem. 2018, 14, 2923–2930, doi:10.3762/bjoc.14.271

• -dione derivatives were obtained in good to excellent yields via the cyclocondensation of 2-formylbenzoic acid and various α-amino acid arylhydrazides using water as the solvent in the presence of sodium dodecyl sulfate as the surfactant and under simple and minimum manipulation, without purification

• . The reaction is totally diastereoselective and gives access to the nitrogenated tricyclic core with a relative trans stereochemistry. Keywords: sodium dodecyl sulfate; totally diastereoselective; trans-stereochemistry; Introduction Tricyclic compounds, such as imidazo[2,1-a]isoindol-5-ones, are

• above, we have never observed the formation of degradation products. (ii) The reaction was performed in water, in the presence of SDS (sodium dodecyl sulfate) as the surfactant. Based on previous studies [35], the most effective method for ensuring the solubility of reactants in water is the use of

Investigation of the electrophilic reactivity of the biologically active marine sesquiterpenoid onchidal and model compounds

• Melissa M. Cadelis and
• Brent R. Copp

Beilstein J. Org. Chem. 2018, 14, 2229–2235, doi:10.3762/bjoc.14.197

• % yield of adducts, respectively, with 17 requiring 72 hour incubation. Sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) was used to look for the presence of protein crosslinking arising from the incubation of dialdehydes 11 and 15 and enol acetate 13 with lysozyme. Bands corresponding

Bromide-assisted chemoselective Heck reaction of 3-bromoindazoles under high-speed ball-milling conditions: synthesis of axitinib

• Jingbo Yu,
• Zikun Hong,
• Xinjie Yang,
• Yu Jiang,
• Zhijiang Jiang and
• Weike Su

Beilstein J. Org. Chem. 2018, 14, 786–795, doi:10.3762/bjoc.14.66

• the function of phase-transfer, other kinds of phase-transfer catalysts (SDS = sodium dodecyl sulfate) were also examined, however, this gave rise to a negative effect (Table S1, entry 8). To our delight, when we replaced the grinding auxiliary by sodium bromide, a moderate product yield (69%) and an

2-Methyl-2,4-pentanediol (MPD) boosts as detergent-substitute the performance of ß-barrel hybrid catalyst for phenylacetylene polymerization

• Julia Kinzel,
• Daniel F. Sauer,
• Marco Bocola,
• Marcus Arlt,
• Tayebeh Mirzaei Garakani,
• Andreas Thiel,
• Klaus Beckerle,
• Tino Polen,
• Jun Okuda and
• Ulrich Schwaneberg

Beilstein J. Org. Chem. 2017, 13, 1498–1506, doi:10.3762/bjoc.13.148

• rhodium-based biohybrid catalyst. Unlike commonly used detergents such as sodium dodecyl sulfate or polyethylene polyethyleneglycol, MPD does not form micelles in solution. Molecular dynamics simulations revealed the effect and position of stabilizing MPD molecules. The advantage of the amphiphilic MPD

• membrane of Escherichia coli (E. coli) [30]. For extraction of membrane proteins, commonly micelle-forming detergents such as sodium dodecyl sulfate (SDS), polyethylene–polyethyleneglycol (PE–PEG), sugar glycosides or polyoxyethylenes are applied [24][25][28][31][32]. SDS is an efficient detergent for

• water addition). Possible fragmentation of the [Rh] catalyst is indicated. FhuA ΔCVFtev was analyzed after digestion by protease from Tobacco Etch Virus (TEV). Coupling of [Rh]-1 to the open channel protein FhuA ΔCVFtev. SDS, sodium dodecyl sulfate; THF, tetrahydrofuran. Comparison of common

Expression, purification and structural analysis of functional GABA transporter 1 using the baculovirus expression system

• Jing Hu,
• Chris Weise,
• Christoph Böttcher,
• Hua Fan and
• Jian Yin

Beilstein J. Org. Chem. 2017, 13, 874–882, doi:10.3762/bjoc.13.88

• microscopy (Figure 1B). The expression of GAT1/GFP in insect cells was further determined by sodium dodecyl sulfate polyacrylamide gel electrophoresis SDS-PAGE, followed by Western blotting with either anti-GFP pAb (Figure 1C) or anti-GAT1 pAb (Figure 1D) and silver staining (Figure 1E) after

Selective and eco-friendly procedures for the synthesis of benzimidazole derivatives. The role of the Er(OTf)₃ catalyst in the reaction selectivity

• Natividad Herrera Cano,
• Jorge G. Uranga,
• Mónica Nardi,
• Antonio Procopio,
• Daniel A. Wunderlin and
• Ana N. Santiago

Beilstein J. Org. Chem. 2016, 12, 2410–2419, doi:10.3762/bjoc.12.235

• ). Table 1 summarizes these results, comparing our current results with other catalysts previously used in the synthesis of benzimidazole derivatives. For instance, the reaction of o-phenylenediamine with aromatic aldehydes using sodium dodecyl sulfate (SDS) as the catalyst gave 1b in 98% yield. However

Artificial Diels–Alderase based on the transmembrane protein FhuA

• Hassan Osseili,
• Daniel F. Sauer,
• Klaus Beckerle,
• Marcus Arlt,
• Tomoki Himiyama,
• Tino Polen,
• Akira Onoda,
• Ulrich Schwaneberg,
• Takashi Hayashi and
• Jun Okuda

Beilstein J. Org. Chem. 2016, 12, 1314–1321, doi:10.3762/bjoc.12.124

• (polyethylene-polyethylene glycol), SDS (sodium dodecyl sulfate), TEV (Tobacco Etch Virus), MALDI–TOF–MS (matrix-assisted laser desorption/ionisation and time-of-flight mass spectrometry), FhuAΔCVFtev (FhuA Δ1-159_C545_V548_F501_tev), CD (circular dichroism), ESI-MS (electrospray ionization-mass spectrometry

Supramolecular polymer assembly in aqueous solution arising from cyclodextrin host–guest complexation

• Jie Wang,
• Zhiqiang Qiu,
• Yiming Wang,
• Li Li,
• Xuhong Guo,
• Duc-Truc Pham,
• Stephen F. Lincoln and
• Robert K. Prud’homme

Beilstein J. Org. Chem. 2016, 12, 50–72, doi:10.3762/bjoc.12.7

• may be decreased by the addition of surfactants as shown by Prud’homme et al. for hydrophobically substituted hydroxyethyl cellulose [51].) Guo et al. showed that the addition of sodium dodecyl sulfate (SDS) to 2 wt % aqueous PAAodn in which the α-CD:n-C18H37 mole ratio is 2:1 to make the mole ratios

Physical properties and biological activities of hesperetin and naringenin in complex with methylated β-cyclodextrin

• Waratchada Sangpheak,
• Jintawee Kicuntod,
• Roswitha Schuster,
• Thanyada Rungrotmongkol,
• Peter Wolschann,
• Nawee Kungwan,
• Helmut Viernstein,
• Monika Mueller and
• Piamsook Pongsawasdi

Beilstein J. Org. Chem. 2015, 11, 2763–2773, doi:10.3762/bjoc.11.297

• ), sodium dodecyl sulfate (SDS), thiazolyl blue (MTT), compounds for phosphate buffer saline (PBS) and lipopolysaccharides (LPS) from Escherichia coli O111:B4 were obtained from Sigma-Aldrich (Darmstadt, Germany). Dulbecco’s Modified Eagle’s Medium (DMEM) was obtained from Life Technologies (Carlsbad, CA

Orthogonal dual-modification of proteins for the engineering of multivalent protein scaffolds

• Michaela Mühlberg,
• Michael G. Hoesl,
• Christian Kuehne,
• Jens Dernedde,
• Nediljko Budisa and
• Christian P. R. Hackenberger

Beilstein J. Org. Chem. 2015, 11, 784–791, doi:10.3762/bjoc.11.88

• an ammonium acetate buffer (100 mM, pH 3.0) with 20 equiv hydroxylamine 1. The successful biotinylation could also be shown by SDS PAGE (sodium dodecyl sulfate polyacrylamide gel electrophoresis) and Western Blot analysis (see Figure 1B–C, lane 3). To probe CuAAC, we first reacted the unmodified

Design, synthesis and photochemical properties of the first examples of iminosugar clusters based on fluorescent cores

• Mathieu L. Lepage,
• Antoine Mirloup,
• Manon Ripoll,
• Fabien Stauffert,
• Anne Bodlenner,
• Raymond Ziessel and
• Philippe Compain

Beilstein J. Org. Chem. 2015, 11, 659–667, doi:10.3762/bjoc.11.74

• ]. Addition of 2.5% of a surfactant such as sodium dodecyl sulfate (SDS) improves the spectral overlap with the absorption spectra (Figure 3a), and likely diminishes formation of potent aggregates. For the pyrene-based cluster 15a two main absorptions maxima at 391 and 292 nm were observed and safely assigned

A small azide-modified thiazole-based reporter molecule for fluorescence and mass spectrometric detection

• Stefanie Wolfram,
• Hendryk Würfel,
• Stefanie H. Habenicht,
• Christine Lembke,
• Phillipp Richter,
• Eckhard Birckner,
• Rainer Beckert and
• Georg Pohnert

Beilstein J. Org. Chem. 2014, 10, 2470–2479, doi:10.3762/bjoc.10.258

• fluorophores. The products were then separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and visualized by in-gel fluorescence detection (Figure 8). BPT/DDY gives the brightest signal whereas intensities of DNS/DDY and BNS/DDY-labeled catalase are clearly lower. The lowest signal

Synthesis and immunological evaluation of protein conjugates of Neisseria meningitidis X capsular polysaccharide fragments

• Laura Morelli,
• Damiano Cancogni,
• Marta Tontini,
• Alberto Nilo,
• Sara Filippini,
• Paolo Costantino,
• Maria Rosaria Romano,
• Francesco Berti,
• Roberto Adamo and
• Luigi Lay

Beilstein J. Org. Chem. 2014, 10, 2367–2376, doi:10.3762/bjoc.10.247

• excess of unconjugated carbohydrate by precipitation with ammonium sulfate and reconstitution in 10 mM NaPi pH 7.2. The occurrence of conjugation was assessed by SDS-PAGE (sodium dodecyl sulfate polyacrylamide gel electrophoresis) and MALDI–TOF mass spectrometry (see Supporting Information File 1). The

Bis(β-lactosyl)-[60]fullerene as novel class of glycolipids useful for the detection and the decontamination of biological toxins of the Ricinus communis family

• Hirofumi Dohi,
• Takeru Kanazawa,
• Akihiro Saito,
• Keita Sato,
• Hirotaka Uzawa,
• Yasuo Seto and
• Yoshihiro Nishida

Beilstein J. Org. Chem. 2014, 10, 1504–1512, doi:10.3762/bjoc.10.155

• quantified by means of sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), and the results were discussed in terms of detection and decontamination of the deadly biological toxin in the Ricinus communis family. Keywords: fullerene; multivalent glycosystems; oligosaccharides; proteotoxins

Recent advances in transition metal-catalyzed Csp²-monofluoro-, difluoro-, perfluoromethylation and trifluoromethylthiolation

• Grégory Landelle,
• Armen Panossian,
• Sergiy Pazenok,
• Jean-Pierre Vors and
• Frédéric R. Leroux

Beilstein J. Org. Chem. 2013, 9, 2476–2536, doi:10.3762/bjoc.9.287

• . Kabalka developed improved conditions for the trifluoromethylation of aryl halides by carrying out the reaction in sodium dodecyl sulfate (SDS) and toluene, and by using TMSCF3 as a cheaper trifluoromethylating agent [65]. The reverse micelles appear to prevent the decomposition of TMSCF3 and provide an