Chemo-enzymatic total synthesis: current approaches toward the integration of chemical and enzymatic transformations

• Ryo Tanifuji and
• Hiroki Oguri

Beilstein J. Org. Chem. 2024, 20, 1693–1712, doi:10.3762/bjoc.20.151

• skeletal rearrangement, providing the distinct skeleton of 11 via carbocation C. This rearrangement involves the preferential migration of an alkenyl group in C to the carbocation, followed by deprotonation at C18 to form an exo-olefin. β-face-selective hydroxylation at C12 in 11 by the P450 enzyme BscG

Benzylic C(sp³)–H fluorination

• Alexander P. Atkins,
• Alice C. Dean and
• Alastair J. J. Lennox

Beilstein J. Org. Chem. 2024, 20, 1527–1547, doi:10.3762/bjoc.20.137

• proposed to proceed via the classical ET/PT/ET pathway (pathway [A]). Nitro, cyano and sulphonyl fluoride substituents on the ring afforded ring fluorination–migration byproducts (via pathway [B]). In total, 14 substrates were fluorinated with yields ranging from 12–58%. Difluorination was observed under

• toluene derivatives. Ring fluorination–migration product yields in parentheses. Electrochemical primary benzylic C(sp3)–H fluorination utilizing pulsed current electrolysis. Acknowledgements We would like to acknowledge Dr Joseph Tate (Syngenta) for discussions. Funding We would like to thank the Royal

Rhodium-catalyzed homo-coupling reaction of aryl Grignard reagents and its application for the synthesis of an integrin inhibitor

• Kazuyuki Sato,
• Satoki Teranishi,
• Atsushi Sakaue,
• Yukiko Karuo,
• Atsushi Tarui,
• Kentaro Kawai,
• Hiroyuki Takeda,
• Tatsuo Kinashi and
• Masaaki Omote

Beilstein J. Org. Chem. 2024, 20, 1341–1347, doi:10.3762/bjoc.20.118

• highly important for performing various cellular functions, such as cell proliferation, migration, and morphological changes [24][25]. Consequently, integrin inhibitors have received great attention as novel candidates for the treatment of several intractable diseases [26][27][28]. In the process of

Synthesis of 1,2,3-triazoles containing an allomaltol moiety from substituted pyrano[2,3-d]isoxazolones via base-promoted Boulton–Katritzky rearrangement

• Constantine V. Milyutin,
• Andrey N. Komogortsev and
• Boris V. Lichitsky

Beilstein J. Org. Chem. 2024, 20, 1334–1340, doi:10.3762/bjoc.20.117

• recyclization is depicted at Scheme 8. Initially, hydrazine molecule is added to double bond of the pyranone ring leading to zwitter-ion A. Further, cleavage of dihydropyranone fragment results in intermediate B. Next, enehydrazine C is formed from compound B through migration of a proton. Then, intramolecular

Domino reactions of chromones with activated carbonyl compounds

• Peter Langer

Beilstein J. Org. Chem. 2024, 20, 1256–1269, doi:10.3762/bjoc.20.108

• minor products as well (7–20% yields). The formation of biphenyls 44 can be explained by 1,4-addition and ring-cleavage to give intermediate AH, aldol reaction (intermediate AI), migration of the ester group from the quaternary carbon to the phenolic oxygen atom (intermediate AJ) and aromatization. The

Confirmation of the stereochemistry of spiroviolene

• Yao Kong,
• Yuanning Liu,
• Kaibiao Wang,
• Tao Wang,
• Chen Wang,
• Ben Ai,
• Hongli Jia,
• Guohui Pan,
• Min Yin and
• Zhengren Xu

Beilstein J. Org. Chem. 2024, 20, 852–858, doi:10.3762/bjoc.20.77

• boron migration occurred during the hydroboration process of spiroviolene that resulted in the production of a mixture of 1α-hydroxyspiroviolane, 9α- and 9β-hydroxyspiroviolane after oxidation. The assertion of the cis-orientation of the 19- and 20-methyl groups provided further support for the revised

• cyclization mechanism of spiroviolene. Keywords: boron migration; diterpene; spiroviolene; stereochemistry; Introduction Terpenes represent one of the most fascinating families of natural products due to their structural complexity and diversity, as well as their indispensable biological functions that

• the 9-organoborane intermediate IM-16 probably through borane–olefin complexes. The suprafacial nature of the boron migration allowed the boron to be α-oriented in intermediate IM-16, which would give 10 with retention of the configuration after NaOH/H2O2 oxidation. The formation of a significant

Skeletal rearrangement of 6,8-dioxabicyclo[3.2.1]octan-4-ols promoted by thionyl chloride or Appel conditions

• Martyn Jevric,
• Julian Klepp,
• Johannes Puschnig,
• Oscar Lamb,
• Christopher J. Sumby and
• Ben W. Greatrex

Beilstein J. Org. Chem. 2024, 20, 823–829, doi:10.3762/bjoc.20.74

• 10.3762/bjoc.20.74 Abstract A skeletal rearrangement of a series of 6,8-dioxabicyclo[3.2.1]octan-4-ols has been developed using SOCl2 in the presence of pyridine. An oxygen migration from C5 to C4 was observed when the C4 alcohols were treated with SOCl2/pyridine, giving a 2-chloro-3,8-dioxabicyclo[3.2.1

• -cleavage reactions and rearrangements when modified at the 4-position [15][16][17]. Baillargeon and Reddy first reported rearrangements of 6,8-dioxabicyclo[3.2.1]octane derivatives promoted by diethylaminosulfur trifluoride (DAST) [18], and later Karban and co-workers reported a migration of oxygen from

• Diels–Alder adducts of 1, and similar results on the effect of configuration were observed [21]. During some recent attempts at the chlorination of the π-stacking chiral auxiliary 10a using SOCl2 [9], we observed the migration of O8 resulting in the formation of anomeric chlorides analogous to the

Methodology for awakening the potential secondary metabolic capacity in actinomycetes

• Shun Saito and
• Midori A. Arai

Beilstein J. Org. Chem. 2024, 20, 753–766, doi:10.3762/bjoc.20.69

• . At a concentration of 182 μM, murecholamide exhibits biological activity in inhibiting the migration of HT29 cancer cells. The second HSM is noaoxazole (39), which was discovered in Streptomyces sp. HR41 [79]. This substance has a chemical structure with a methylated oxazole ring at the end of a

Regioselective quinazoline C2 modifications through the azide–tetrazole tautomeric equilibrium

• Dāgs Dāvis Līpiņš,
• Andris Jeminejs,
• Una Ušacka,
• Anatoly Mishnev,
• Māris Turks and
• Irina Novosjolova

Beilstein J. Org. Chem. 2024, 20, 675–683, doi:10.3762/bjoc.20.61

• quinazolines [17][18], and sulfonyl group rearrangement has been applied to functionalize purines [19], the literature lacks information on sulfonyl group migration in quinazolines. Notably, this transformation has not been previously reported, despite its potential utility in the synthesis of drugs such as

Entry to new spiroheterocycles via tandem Rh(II)-catalyzed O–H insertion/base-promoted cyclization involving diazoarylidene succinimides

• Alexander Yanovich,
• Anastasia Vepreva,
• Ksenia Malkova,
• Grigory Kantin and
• Dmitry Dar’in

Beilstein J. Org. Chem. 2024, 20, 561–569, doi:10.3762/bjoc.20.48

• of DIPEA (60 mol %), which can be explained by the presence of EDG in the corresponding DAS. In general, the second step of the process appears to occur as endo-cyclization onto an activated multiple bond followed by migration of the remaining endocyclic double bond into the furanone ring. The

• 1H NMR spectroscopy data, one of its components was the product of the migration of the double bond of the benzylidene fragment into the succinimide cycle – compound 22. Finally, a compound with a longer side chain 24, obtained from 2-(2-bromoethoxy)ethanol (23), underwent exclusively isomerization

• from each of the bromo-substituted alcohols used by us have two main pathways of transformation under the action of base: 1) exo-tet cyclization with substitution of the bromine atom and formation of the spirocycle, and 2) migration of the exocyclic double C=C bond into the imide cycle (the process is

Synthesis of photo- and ionochromic N-acylated 2-(aminomethylene)benzo[b]thiophene-3(2Н)-ones with a terminal phenanthroline group

• Vladimir P. Rybalkin,
• Sofiya Yu. Zmeeva,
• Lidiya L. Popova,
• Irina V. Dubonosova,
• Olga Yu. Karlutova,
• Oleg P. Demidov,
• Alexander D. Dubonosov and
• Vladimir A. Bren

Beilstein J. Org. Chem. 2024, 20, 552–560, doi:10.3762/bjoc.20.47

• a terminal phenanthroline receptor substituent was synthesized. Upon irradiation in acetonitrile or DMSO with light of 436 nm, they underwent Z–E isomerization of the C=C bond, followed by very fast N→O migration of the acyl group and the formation of nonemissive O-acylated isomers. These isomers

• “overall quantum yield” is used in Table 1 [29]. The formation of the short-lived E-isomer was earlier observed only in vitrified solvents at 77 K or under flash photolysis conditions [14]. As such, the parameters of the thermal acyl migration under steady-state irradiation conditions were not determined

• photoisomerization of the C=C bond, followed by very fast thermal N→O migration of the acyl group and the formation of O-acylated isomers. This rearrangement was accompanied by a decrease of the initial fluorescence intensity at 465–468 nm up to zero, since the resulting OAc− form was nonemissive. The reverse

Comparison of glycosyl donors: a supramer approach

• Anna V. Orlova,
• Nelly N. Malysheva,
• Maria V. Panova,
• Nikita M. Podvalnyy,
• Michael G. Medvedev and
• Leonid O. Kononov

Beilstein J. Org. Chem. 2024, 20, 181–192, doi:10.3762/bjoc.20.18

• treated with 90% aq trifluoroacetic acid in CH2Cl2 to give diol 7 (70% yield) that was formed due to migration of a chloroacetyl group from O-7 to O-9. The structure of diol 7 was established by NMR spectroscopy, high-resolution mass spectrometry and X-ray diffraction analysis (see the Experimental

Long oligodeoxynucleotides: chemical synthesis, isolation via catching-by-polymerization, verification via sequencing, and gene expression demonstration

• Yipeng Yin,
• Reed Arneson,
• Alexander Apostle,
• Adikari M. D. N. Eriyagama,
• Komal Chillar,
• Emma Burke,
• Martina Jahfetson,
• Yinan Yuan and
• Shiyue Fang

Beilstein J. Org. Chem. 2023, 19, 1957–1965, doi:10.3762/bjoc.19.146

• compared with the authentic dsODNs using agarose gel electrophoresis (steps 3 and 3', Figure 1). As shown in Figure 2A,B, the synthesized and authentic samples have similar migration distances. The identity of the ODNs was then determined by Sanger sequencing. The PCR products were cloned into the pCR

• and reverse primers (step 6). The PCR products were analyzed with agarose gel electrophoresis (step 5', Figure 1, and Figure 3). Based on migration distances, in the case of 399 bp sequence, 20 out of 32 colonies likely contained the expected 399 bp fragment. Three colonies were submitted for Sanger

Studying specificity in protein–glycosaminoglycan recognition with umbrella sampling

• Mateusz Marcisz,
• Sebastian Anila,
• Margrethe Gaardløs,
• Martin Zacharias and
• Sergey A. Samsonov

Beilstein J. Org. Chem. 2023, 19, 1933–1946, doi:10.3762/bjoc.19.144

• essential in the cell biology [15][16]. In addition, GAGs also facilitate cell migration, act as shock-absorbers in joints and as a sieve in extracellular matrices and are important in maintaining the compressibility of the cartilage. The participation of GAGs in physiological, pathological, and therapeutic

Charge carrier transport in perylene-based and pyrene-based columnar liquid crystals

• Alessandro L. Alves,
• Simone V. Bernardino,
• Carlos H. Stadtlober,
• Edivandro Girotto,
• Giliandro Farias,
• Rodney M. do Nascimento,
• Sergio F. Curcio,
• Thiago Cazati,
• Marta E. R. Dotto,
• Juliana Eccher,
• Leonardo N. Furini,
• Hugo Gallardo,
• Harald Bock and
• Ivan H. Bechtold

Beilstein J. Org. Chem. 2023, 19, 1755–1765, doi:10.3762/bjoc.19.128

• ), organic light-emitting diodes (OLEDs) and sensors [1][2]. Columnar liquid crystals are attractive due to their solution processability and their self-organization in highly anisotropic supramolecular architectures, which favors the mainly one-dimensional migration of charge carriers with an anisotropy of

• charge transport behavior. DFT calculations assisted the interpretation of electron and hole migration mechanism using the frontier orbital energies and the conjugation within the π-system. Results and Discussion The syntheses of 1 and 2 were previously published in [25] and [26], respectively. 1 is a

N-Sulfenylsuccinimide/phthalimide: an alternative sulfenylating reagent in organic transformations

• Fatemeh Doraghi,
• Seyedeh Pegah Aledavoud,
• Mehdi Ghanbarlou,
• Bagher Larijani and
• Mohammad Mahdavi

Beilstein J. Org. Chem. 2023, 19, 1471–1502, doi:10.3762/bjoc.19.106

• efficient Lewis acid catalyst (Scheme 10) [50]. In the procedure, oxidative cleavage of one S–N bond and 1,2-sulfur migration afforded π-conjugated 6-substituted 2,3-diarylbenzo[b]thiophenes 16. A plausible mechanism is shown in Scheme 11. The coordination of AlCl3 with the phthalimide/succinimide unit of 1

• , which underwent a ring expansion and 1,2-sulfur migration and subsequent deprotonation/aromatization to deliver product 16. Another work in the use of AlCl3 for cyclization of N‑arylpropynamides 17 with N‑sulfanylsuccinimides 1 was described by Gao and Zhou et al. (Scheme 12) [51]. Annulation in the

• , CF3CO2SR, which was produced in the previous step, as a sulfenylating reagent, reacted with I to form the 3,3-bis-sulfide indolenium III. The migration of a sulfide group to the C2-site of indole, generated 2,3-disubstituted indole V. Protonation of V resulted in indolenium intermediate VI. Finally

Application of N-heterocyclic carbene–Cu(I) complexes as catalysts in organic synthesis: a review

• Nosheen Beig,
• Varsha Goyal and
• Raj K. Bansal

Beilstein J. Org. Chem. 2023, 19, 1408–1442, doi:10.3762/bjoc.19.102

• isomerization-induced alkenylation of electron-rich heteroarenes 187 and 188 utilizing allyl halides as reactants. The same catalyst system was found to effectively promote double-bond migration of the initially formed allylarenes resulting in vinylarene products. This method has been successfully used to

Synthesis of ether lipids: natural compounds and analogues

• Marco Antônio G. B. Gomes,
• Alicia Bauduin,
• Chloé Le Roux,
• Romain Fouinneteau,
• Wilfried Berthe,
• Mathieu Berchel,
• Hélène Couthon and
• Paul-Alain Jaffrès

Beilstein J. Org. Chem. 2023, 19, 1299–1369, doi:10.3762/bjoc.19.96

• ) The second scheme is shorter (Figure 4D) and starts with the acylation of 4.16 to produce 4.17. Then, the debenzylation of the primary alcohol produced 4.18. Interestingly, the migration of the acetyl group from sn-2 to sn-3 position was not observed. Finally, the installation of the phosphocholine

• whereas heating it in 75% acetic acid solution produced the deprotected compound but migration of the acyl group from the sn-2 to the sn-3 position lead to an inseparable mixture of regioisomers. A selective desilylation of 12.5 was finally achieved with BF3·Et2O producing 12.6 without migration of the

• constitutive Ca2+ entry thus influencing breast cancer cell migration [106]. 1.4 Analogues of PAF with modification at the sn-3 position Finally, a series of PAF’s analogues were reported by changing the structure of the phosphocholine polar head group. Ohno et al. replaced the trimethylammonium moiety by

The unique reactivity of 5,6-unsubstituted 1,4-dihydropyridine in the Huisgen 1,4-diploar cycloaddition and formal [2 + 2] cycloaddition

• Xiu-Yu Chen,
• Hui Zheng,
• Ying Han,
• Jing Sun and
• Chao-Guo Yan

Beilstein J. Org. Chem. 2023, 19, 982–990, doi:10.3762/bjoc.19.73

• acetylenedicarboxylate to give the adduct C. Then, the direct coupling of the positive charge and the negative charge affords the 2-azabicyclo[4.2.0]octa-3,7-diene 5. On the other hand, a carbenium ion D can be formed by migration of a hydrogen atom in intermediate C, which in turn converts into a fused bicyclic

A new oxidatively stable ligand for the chiral functionalization of amino acids in Ni(II)–Schiff base complexes

• Alena V. Dmitrieva,
• Oleg A. Levitskiy,
• Yuri K. Grishin and
• Tatiana V. Magdesieva

Beilstein J. Org. Chem. 2023, 19, 566–574, doi:10.3762/bjoc.19.41

• to rt in [40]) allowed obtaining the targeted compound; however, acylation was accompanied with the migration of the t-Bu group yielding 2-benzoyl-4-tert-butylaniline and the corresponding 5-butylated isomer in a 10:1 ratio. Our attempts to separate the isomers were unsuccessful. However, as it will

Transition-metal-catalyzed domino reactions of strained bicyclic alkenes

• Austin Pounder,
• Eric Neufeld,
• Peter Myler and
• William Tam

Beilstein J. Org. Chem. 2023, 19, 487–540, doi:10.3762/bjoc.19.38

• ) [49]. In contrast to the 1,2-difunctionalization of bicyclic alkenes via arylzinc reagents reported by Nakamura under Fe catalysis (Scheme 13) [48], this reaction is considered to undergo a 1,4-Co migration ultimately generating 1,4-difunctionalization species. Mechanistically, the reaction likely

• would afford the [2 + 2] adduct. Hydroruthenation of the allene produces 103 which can either undergo reductive elimination to afford the cyclopropanated bicyclic alkene or undergo a [2 + 2] cycloreversion to generate the Ru–carbene 104. The Ru–carbene 104 can rearrange to 100 through a 1,3-migration of

• previously been a challenging transformation due to the propensity of these systems to produce non-cyclized hydroarylation products due to an unproductive rhodium 1,4-migration on heteroaromatic moieties. The use of benzothiophene, benzofurans, and benzopyrrole boronate esters in this investigation prevented

Strategies to access the [5-8] bicyclic core encountered in the sesquiterpene, diterpene and sesterterpene series

• Cécile Alleman,
• Charlène Gadais,
• Laurent Legentil and
• François-Hugues Porée

Beilstein J. Org. Chem. 2023, 19, 245–281, doi:10.3762/bjoc.19.23

Germacrene B – a central intermediate in sesquiterpene biosynthesis

• Houchao Xu and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2023, 19, 186–203, doi:10.3762/bjoc.19.18

• assignments and even error propagation, and shows the importance of structure elucidation by classical methods, i.e., isolation and compound characterisation by NMR spectroscopy and determination of optical rotation. Compound 51 can be generated biosynthetically from I3a through 1,2-methyl migration to I3b

1,4-Dithianes: attractive C2-building blocks for the synthesis of complex molecular architectures

• Bram Ryckaert,
• Ellen Demeyere,
• Frederick Degroote,
• Hilde Janssens and
• Johan M. Winne

Beilstein J. Org. Chem. 2023, 19, 115–132, doi:10.3762/bjoc.19.12

• pioneered by Parham and co-workers to be the most suited (Scheme 4, 12 → 2) [28][29][30]. Parham described a ring expansion of 1,3-dithiolanes derived from α-halocarbonyls into the 1,4-dithianes which then dehydrohalogenate to afford dihydrodithiins. The ring expansion involves a 1,2-sulfur migration of a β

• the relative stereochemistry (Scheme 17) [108][109]. 6 Synthetic equivalents of vinyl carbenes in (2 + 1) cycloadditions: Au(I)-catalyzed generation of 1,4-dithiane-fused vinylcarbene species In 2007, Wang and co-workers reported a gold-catalyzed Parham-type 1,2-sulfur migration to generate in situ a

• during our (formal) total synthesis of (±)-cephalotaxine (130, Scheme 20b) [112]. Here, the desired desulfurization of a 1,4-dithiane could not be achieved without concomitant migration of an alkene double bond (viz 127 → 128), making the final steps to complete the synthesis quite cumbersome, as at best

Combining the best of both worlds: radical-based divergent total synthesis

• Kyriaki Gennaiou,
• Antonios Kelesidis,
• Maria Kourgiantaki and
• Alexandros L. Zografos

Beilstein J. Org. Chem. 2023, 19, 1–26, doi:10.3762/bjoc.19.1

• a semipinacol rearrangement leading to 95, followed by subsequent cyclization to natural products guignardone A (96) and C (97). This process involved 1,2-allyl migration and C–O bond formation through a semipinacol rearrangement and a cyclodehydration cascade reaction (Scheme 8). Following the same