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Search for "solid phase" in Full Text gives 245 result(s) in Beilstein Journal of Organic Chemistry. Showing first 200.

Solid-phase total synthesis and structural confirmation of antimicrobial longicatenamide A

  • Takumi Matsumoto,
  • Takefumi Kuranaga,
  • Yuto Taniguchi,
  • Weicheng Wang and
  • Hideaki Kakeya

Beilstein J. Org. Chem. 2022, 18, 1560–1566, doi:10.3762/bjoc.18.166

Graphical Abstract
  • communication in the microbial world. Herein, we report the solid-phase total synthesis and structural confirmation of longicatenamide A. First, commercially unavailable building blocks were chemically synthesized with stereocontrol. Second, the peptide chain was elongated via Fmoc-based solid-phase peptide
  • longicatenamide A was confirmed. The developed solid-phase synthesis is expected to facilitate the rapid synthesis of diverse synthetic analogues. Keywords: antimicrobial; longicatenamides; peptidic natural product; solid-phase synthesis; total synthesis; Introduction Naturally occurring bioactive compounds can
  • microbial world. To elucidate the role of compounds 1–4 in the microbial world, developing a strategy to synthesize compounds 1–4, including future derivatization to produce probe molecules, is required. Herein, we report the total synthesis of peptide 1 by Fmoc-based solid-phase peptide synthesis [9] and
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Published 18 Nov 2022

Using UHPLC–MS profiling for the discovery of new sponge-derived metabolites and anthelmintic screening of the NatureBank bromotyrosine library

  • Sasha Hayes,
  • Aya C. Taki,
  • Kah Yean Lum,
  • Joseph J. Byrne,
  • Merrick G. Ekins,
  • Robin B. Gasser and
  • Rohan A. Davis

Beilstein J. Org. Chem. 2022, 18, 1544–1552, doi:10.3762/bjoc.18.164

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  • II ETD ESI-qTOF. Phenomenex Strata solid phase extraction (SPE) cartridges (3 cc, polypropylene, single fritted) were used for the small-scale marine sponge extractions. GRACE Davisil (35–70 µm, 60 Å) C18-bonded silica was used for pre-absorption work before reversed-phase (RP) HPLC. The preabsorbed
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Published 15 Nov 2022

Thermally activated delayed fluorescence (TADF) emitters: sensing and boosting spin-flipping by aggregation

  • Ashish Kumar Mazumdar,
  • Gyana Prakash Nanda,
  • Nisha Yadav,
  • Upasana Deori,
  • Upasha Acharyya,
  • Bahadur Sk and
  • Pachaiyappan Rajamalli

Beilstein J. Org. Chem. 2022, 18, 1177–1187, doi:10.3762/bjoc.18.122

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  • thermally activated delayed fluorescence (TADF) characteristics are emerging due to the potential applications in optoelectronic devices, time-resolved luminescence imaging, and solid-phase sensing. Herein, we synthesized two (4-bromobenzoyl)pyridine (BPy)-based donor–acceptor (D–A) compounds with varying
  • donor size and strength: the emitter BPy-pTC with tert-butylcarbazole (TC) as the donor and BPy-p3C with bulky tricarbazole (3C) as the donor unit. Both BPy-pTC and BPy-p3C exhibited prominent emission with TADF properties in solution and in the solid phase. The stronger excited-state charge transfer
  • sensitive to acidic protons. Hence, the exposure to acid and base vapors using trifluoroacetic acid (TFA) and triethylamine (TEA) led to solid-phase fluorescence switching with fatigue resistance. The current study demonstrates the role of the donor strength and size in tuning ΔEST in the aggregated state
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Published 08 Sep 2022

On Reuben G. Jones synthesis of 2-hydroxypyrazines

  • Pierre Legrand and
  • Yves L. Janin

Beilstein J. Org. Chem. 2022, 18, 935–943, doi:10.3762/bjoc.18.93

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  • system driven by a UV detector set to 254 nm unless required otherwise. Sample deposition was carried out by absorption of the mixture to be purified on a small amount of the solid phase followed by its deposition on the top of the column. For chromatography run at 60 °C a complete and illustrated
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Published 29 Jul 2022

First series of N-alkylamino peptoid homooligomers: solution phase synthesis and conformational investigation

  • Maxime Pypec,
  • Laurent Jouffret,
  • Claude Taillefumier and
  • Olivier Roy

Beilstein J. Org. Chem. 2022, 18, 845–854, doi:10.3762/bjoc.18.85

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  • evaluated few segment-based coupling methods. The optimizations made with respect to the standard submonomer synthetic conditions will be useful for developing solid-phase synthesis and access longer and more diverse N-(alkylamino)peptoid oligomers in the future. NMR analysis of the synthesized oligomers 1
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Published 14 Jul 2022

A trustworthy mechanochemical route to isocyanides

  • Francesco Basoccu,
  • Federico Cuccu,
  • Federico Casti,
  • Rita Mocci,
  • Claudia Fattuoni and
  • Andrea Porcheddu

Beilstein J. Org. Chem. 2022, 18, 732–737, doi:10.3762/bjoc.18.73

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  • entirely exerted in the solid phase through mechanochemical activation. In conclusion, we hope that our synthetic strategy could be considered a significant step toward a less impacting and more extensive research on isocyanide chemistry. Resonance forms of isocyanides. The purification process of a
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Published 22 Jun 2022

Synthesis and bioactivity of pyrrole-conjugated phosphopeptides

  • Qiuxin Zhang,
  • Weiyi Tan and
  • Bing Xu

Beilstein J. Org. Chem. 2022, 18, 159–166, doi:10.3762/bjoc.18.17

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  • shown nucleobases, as the heteroaromatic groups, are able to act as the N-capping group for EISA of phosphopeptides [67]. In this study, we chose to examine a different type of heteroaromatic group, pyrroles, because pyrrole is adaptable for solid-phase synthesis [68] so that it is feasible to conjugate
  • the designed peptides combines solution synthesis of the enzyme trigger or the fluorophore with the solid-phase synthesis of the pyrrole-peptide conjugates. We used phosphorus pentoxide and phosphoric acid to react with ᴅ-tyrosine, ʟ-tyrosine, ʟ-serine, or ᴅ-serine to produce ᴅ-phosphotyrosine, ʟ
  • -phosphotyrosine, ʟ-phosphoserine, or ᴅ-phosphoserine, respectively. After being protected by an Fmoc group, these phosphorylated amino acids are suitable for solid-phase synthesis. We also used solution-phase synthesis to synthesize NBD-β-alanine according to the reported procedures [66]. We used standard Fmoc
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Published 31 Jan 2022

Peptide stapling by late-stage Suzuki–Miyaura cross-coupling

  • Hendrik Gruß,
  • Rebecca C. Feiner,
  • Ridhiwan Mseya,
  • David C. Schröder,
  • Michał Jewgiński,
  • Kristian M. Müller,
  • Rafał Latajka,
  • Antoine Marion and
  • Norbert Sewald

Beilstein J. Org. Chem. 2022, 18, 1–12, doi:10.3762/bjoc.18.1

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  • organoboron containing side chain in the i + 4-position. The peptides were synthesised on Rink amide resin by solid-phase peptide synthesis (SPPS) with Fmoc/t-Bu strategy followed by on-resin SMC. For the cross-coupling, a modified protocol by Planas and co-workers was used [78]. Pd2(dba)3 was employed as the
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Published 03 Jan 2022

First total synthesis of hoshinoamide A

  • Haipin Zhou,
  • Zihan Rui,
  • Yiming Yang,
  • Shengtao Xu,
  • Yutian Shao and
  • Long Liu

Beilstein J. Org. Chem. 2021, 17, 2924–2931, doi:10.3762/bjoc.17.201

Graphical Abstract
  • -sensitive Plasmodium falciparum. Herein, we describe the first total synthesis of hoshinoamide A by the combination of liquid-phase and solid-phase peptide synthesis. Liquid-phase synthesis is to improve the coupling yield of ʟ-Val3 and N-Me-ᴅ-Phe2. Connecting other amino acids efficiency and convergence is
  • in Scheme 1, we initially tested Fmoc solid-phase peptide synthesis (SPPS) [13] to get 2-chlorotrityl resin-bound Pro1-(N-Me)-Phe2 dipeptide 2 under the conditions of HCTU and DIPEA. Unfortunately, the N-Me coupling proceeded in low yield (<10%). In order to improve the coupling yield of the hindered
  • spectroscopic data of synthetic hoshinoamide A were in excellent agreement with the data previously reported for the natural product. Conclusion In summary, we have completed the first total synthesis of hoshinoamide A. By combining the liquid and solid-phase peptide synthetic strategy, hoshinoamide A was
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Published 15 Dec 2021

Progress and challenges in the synthesis of sequence controlled polysaccharides

  • Giulio Fittolani,
  • Theodore Tyrikos-Ergas,
  • Denisa Vargová,
  • Manishkumar A. Chaube and
  • Martina Delbianco

Beilstein J. Org. Chem. 2021, 17, 1981–2025, doi:10.3762/bjoc.17.129

Graphical Abstract
  • approach was efficient in solid phase as well as in solution phase synthesis. The participating (S)-(phenylthiomethyl) benzyl chiral auxiliary at the C-2 position of the glucosyl donor permitted the solid phase synthesis of a branched pentaglucan having a α(1–3) branch on an α(1–6) backbone [174]. Boron
  • ][260]. The automated solid-phase approach required only two BBs with the amino group protected either with the N-TCA 79 or with the N-Cbz group 80 (Scheme 12). Compounds 81–85 served as standards to explore the conformational space of COS with different PA. NMR analysis and MD simulations revealed the
  • , ranging from tri- to hexasaccharide, was obtained via iterative electrochemical assembly [266]. A solid-phase automated approach delivered β(1–6)-glucosamine hexasaccharide 87a and dodecasaccharide 87b (Scheme 13A) [267]. β(1–3)-Oligomer 90 was prepared as chitin mimetics (Scheme 13B). Despite the subtle
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Published 05 Aug 2021

Cationic oligonucleotide derivatives and conjugates: A favorable approach for enhanced DNA and RNA targeting oligonucleotides

  • Mathias B. Danielsen and
  • Jesper Wengel

Beilstein J. Org. Chem. 2021, 17, 1828–1848, doi:10.3762/bjoc.17.125

Graphical Abstract
  • solid-phase DNA synthesis, circumventing some of the laborious work involved in the synthesis of some internucleotide linkages. The authors demonstrated that this new modification could enhance the stability of the ON/RNA duplex, although no significant change was observed for the ON /DNA duplex (100 mM
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Published 29 Jul 2021

Chemical synthesis of C6-tetrazole ᴅ-mannose building blocks and access to a bioisostere of mannuronic acid 1-phosphate

  • Eleni Dimitriou and
  • Gavin J. Miller

Beilstein J. Org. Chem. 2021, 17, 1527–1532, doi:10.3762/bjoc.17.110

Graphical Abstract
  • this end, synthetic chemistry strategies (both solution and solid phase) have demonstrated exciting capabilities for access to native alginate oligosaccharides in recent years [6][7][8][9][10]. As part of a program to access non-native alginate oligosaccharide sequences, we targeted a synthetic
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Published 05 Jul 2021

Double-headed nucleosides: Synthesis and applications

  • Vineet Verma,
  • Jyotirmoy Maity,
  • Vipin K. Maikhuri,
  • Ritika Sharma,
  • Himal K. Ganguly and
  • Ashok K. Prasad

Beilstein J. Org. Chem. 2021, 17, 1392–1439, doi:10.3762/bjoc.17.98

Graphical Abstract
  • phosphoramidites 160 and 164 which were then incorporated into oligodeoxynucleotides using automated solid phase synthesis. The synthesized oligonucleotides were removed from the solid support by treatment with concentrated aqueous ammonia which resulted in the formation of incorporated monomers 161 and 165 by
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Published 08 Jun 2021

A comprehensive review of flow chemistry techniques tailored to the flavours and fragrances industries

  • Guido Gambacorta,
  • James S. Sharley and
  • Ian R. Baxendale

Beilstein J. Org. Chem. 2021, 17, 1181–1312, doi:10.3762/bjoc.17.90

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Published 18 May 2021

Beyond ribose and phosphate: Selected nucleic acid modifications for structure–function investigations and therapeutic applications

  • Christopher Liczner,
  • Kieran Duke,
  • Gabrielle Juneau,
  • Martin Egli and
  • Christopher J. Wilds

Beilstein J. Org. Chem. 2021, 17, 908–931, doi:10.3762/bjoc.17.76

Graphical Abstract
  • diseases. Oligonucleotides with alterations to their scaffold, prepared with modified nucleosides and solid-phase synthesis, have yielded molecules with interesting biophysical properties that bind to their targets and are tolerated by the cellular machinery to elicit a therapeutic outcome. Structural
  • modifications N3' → P5' phosphoramidate The N3' → P5' phosphoramidate DNA (3'-NP DNA) contains a negatively charged internucleotide linkage, but one of the bridging oxygens is replaced by a nitrogen (Figure 1A). The 3'-NP linkage is generated during solid-phase synthesis where the incoming protected 5'-DMT-3
  • synthesize the nucleoside dimer phosphoramidite with the appropriate amide linkage, which can then be introduced into the strand by solid-phase synthesis. These dimers are synthesized by using an amide coupling reagent to condense a 3'-carboxylic acid nucleoside with a 5'-amine nucleoside, where the
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Published 28 Apr 2021

Enhanced target cell specificity and uptake of lipid nanoparticles using RNA aptamers and peptides

  • Roslyn M. Ray,
  • Anders Højgaard Hansen,
  • Maria Taskova,
  • Bernhard Jandl,
  • Jonas Hansen,
  • Citra Soemardy,
  • Kevin V. Morris and
  • Kira Astakhova

Beilstein J. Org. Chem. 2021, 17, 891–907, doi:10.3762/bjoc.17.75

Graphical Abstract
  • ’-flouronated base; italics and underlined = 2’-O-methyl base Complementary DNA A-1: (Cy5/AGG CTA TCT AGA ATG TAC) G-3: (Cy5/TCT ATC AAT CTA TCA) Peptide synthesis, purification, and characterization Peptide assembly was carried out by solid-phase peptide synthesis in standard solid-phase extraction filtration
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Published 26 Apr 2021

DNA with zwitterionic and negatively charged phosphate modifications: Formation of DNA triplexes, duplexes and cell uptake studies

  • Yongdong Su,
  • Maitsetseg Bayarjargal,
  • Tracy K. Hale and
  • Vyacheslav V. Filichev

Beilstein J. Org. Chem. 2021, 17, 749–761, doi:10.3762/bjoc.17.65

Graphical Abstract
  • section are shown: nuclear DNA (blue), 4Ts-FAM/ON (magenta), cell membrane (yellow). Scale bar: 20 μm. The synthesis of ONs with Ts and N+ modification using the Staudinger reaction during the solid-phase DNA synthesis. Conditions: (i) 0.5 M TsN3, MeCN, 37 °C, 30 min for Ts modification; 0.7 M 4
  • sequences [56], regardless of the number of BCNSs incorporated. This is in line with our results where increasing the number of N+ or Ts modifications showed no benefit in Tm values of the antiparallel duplexes formed with complementary RNA or DNA. In order to be compatible with standard automated solid
  • -phase DNA or RNA synthesis, the introduction of SaRNA monomers into an RNA backbone involved a 14-step preparation of the phosphoramidite for the SaRNA-TT dinucleotide. Similarly, the incorporation of BCNS groups on a DNA backbone requires the synthesis of thymidine and 2’-OMe-uridine phosphoramidites
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Published 29 Mar 2021

Amino- and polyaminophthalazin-1(2H)-ones: synthesis, coordination properties, and biological activity

  • Zbigniew Malinowski,
  • Emilia Fornal,
  • Agata Sumara,
  • Renata Kontek,
  • Karol Bukowski,
  • Beata Pasternak,
  • Dariusz Sroczyński,
  • Joachim Kusz,
  • Magdalena Małecka and
  • Monika Nowak

Beilstein J. Org. Chem. 2021, 17, 558–568, doi:10.3762/bjoc.17.50

Graphical Abstract
  • A and B, the geometry optimization was performed for the isolated molecules A and B. In a solid phase the Cu(II) central ion is five-coordinated by three nitrogen atoms of 7 and two chloride anions. The CuN3Cl2 coordination center adopts the strongly distorted square pyramidal geometry with the five
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Published 25 Feb 2021

Synthesis and physicochemical evaluation of fluorinated lipopeptide precursors of ligands for microbubble targeting

  • Masayori Hagimori,
  • Estefanía E. Mendoza-Ortega and
  • Marie Pierre Krafft

Beilstein J. Org. Chem. 2021, 17, 511–518, doi:10.3762/bjoc.17.45

Graphical Abstract
  • . By contrast, the hydrocarbon lipopeptide led to microbubbles with a larger mean diameter and a significantly lower stability. Keywords: adsorption at fluid interfaces; drug delivery; microbubble targeting; molecular imaging; monolayer; perfluoroalkylated lipopeptide; solid-phase peptide synthesis
  • safety [15][16][17]. Various effective receptor-binding peptides have been identified by the phage display technology [18]. The peptides can be readily prepared through solid-phase peptide synthesis (SPPS), a highly reproducible method with minimal side reactions. Many peptide–lipid conjugates
  • (SG)5KSS peptide chain is assembled stepwise using a Fmoc solid-phase peptide synthesis procedure. In a second step, the two perfluoroalkylated chains are grafted to the peptide chain through a lysine moiety. Next, the surface activity of the synthesized lipopeptides is investigated by assessing their
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Published 19 Feb 2021

Synthetic strategies of phosphonodepsipeptides

  • Jiaxi Xu

Beilstein J. Org. Chem. 2021, 17, 461–484, doi:10.3762/bjoc.17.41

Graphical Abstract
  • hydrogenolysis (Scheme 23) [37]. Following a similar strategy, phosphonodepsidipeptides 141 and phosphonodepsitripeptides 144 were synthesized as norleucine-derived phosphonopeptides (Scheme 24) [38]. The protected phosphonodepsipeptide 145 was applied in a solid-phase phosphonodepsipeptide synthesis. After
  • phosphonodepsitripeptide with BOP as coupling reagent. Synthesis of norleucine-derived phosphonodepsipeptides 135 and 138. Synthesis of norleucine-derived phosphonodepsipeptides 141 and 144. Solid-phase synthesis of phosphonodepsipeptides. Synthesis of phosphonodepsidipeptides via the Mitsunobu reaction. Synthesis of γ
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Published 16 Feb 2021

19F NMR as a tool in chemical biology

  • Diana Gimenez,
  • Aoife Phelan,
  • Cormac D. Murphy and
  • Steven L. Cobb

Beilstein J. Org. Chem. 2021, 17, 293–318, doi:10.3762/bjoc.17.28

Graphical Abstract
  • aliphatic amino acid, (E)-2-amino-5-(pentafluorosulfanyl)pent-4-enoic acid (14, Figure 1), SF5NVa [21]. Most recently, Cobb et al. [22] reported the synthesis of several pentafluorosulfanyl phenylalanine derivatives with suitable protecting groups to allow incorporation into peptides through common solid
  • -phase peptide synthesis (SPPS) methods (15 and 16, Figure 1). A second well-established methodology for the 19F isotopic labelling of protein and peptides involves the post-translational chemical conjugation of an 19F probe to specific amino acids present within the protein, typically cysteine and
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Published 28 Jan 2021

Supramolecular polymerization of sulfated dendritic peptide amphiphiles into multivalent L-selectin binders

  • David Straßburger,
  • Svenja Herziger,
  • Katharina Huth,
  • Moritz Urschbach,
  • Rainer Haag and
  • Pol Besenius

Beilstein J. Org. Chem. 2021, 17, 97–104, doi:10.3762/bjoc.17.10

Graphical Abstract
  • intact. Commonly this heterofunctionalization is achieved using esterification of trimesic acid and subsequent partial hydrolysis, however, this route suffers from difficult purification steps [37][38]. Here, it was conveniently achieved in one step via a solid-phase supported approach, using trimesic
  • yielding novel solid phase approach and will be further used for dendritic peptide amphiphile heterofunctionalization. By taking advantage of copper-catalyzed azide–alkyne cycloaddition chemistry, a highly soluble sulfated nonaphenylalanine peptide amphiphile was prepared via this route. The spectroscopic
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Published 12 Jan 2021

Incorporation of a metal-mediated base pair into an ATP aptamer – using silver(I) ions to modulate aptamer function

  • Marius H. Heddinga and
  • Jens Müller

Beilstein J. Org. Chem. 2020, 16, 2870–2879, doi:10.3762/bjoc.16.236

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  • quadruplex, so that metal-mediated base pairs can be introduced. 3) It is a short oligonucleotide, so the modified aptamers can easily be synthesized using automated solid-phase synthesis. 4) The target molecule of this aptamer is a small molecule, facilitating the binding assays. 5) The aptamer also binds
  • phosphoramidite-protected imidazole nucleoside as required for automated DNA solid-phase synthesis was synthesized as previously reported [30]. The oligonucleotides were synthesized on a DNA/RNA synthesizer H-8 (K&A Laborgeräte) using standard protocols for automated solid-phase synthesis (coupling time: 1000 s
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Published 25 Nov 2020

Changed reactivity of secondary hydroxy groups in C8-modified adenosine – lessons learned from silylation

  • Jennifer Frommer and
  • Sabine Müller

Beilstein J. Org. Chem. 2020, 16, 2854–2861, doi:10.3762/bjoc.16.234

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  • synthesis strategy was re-designed, allowing the preparation of building block 9 (Scheme 2) ready for use in solid-phase RNA synthesis with excellent yield. Here, we report on the selectivity problem in 2’-O-silylation of adenosine derivative 7 (Scheme 1) and the optimized synthesis strategy for the
  • building block 9 ready for use in solid-phase RNA synthesis. When starting the synthesis via this way, we were not sure, if the protected adenosine derivative 10 is a suitable substrate for iodination. The cyclic nature of the 3′,5′-O-di-tert-butylsilyl group is associated with a slight ring strain energy
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Published 23 Nov 2020

On the mass spectrometric fragmentations of the bacterial sesterterpenes sestermobaraenes A–C

  • Anwei Hou and
  • Jeroen S. Dickschat

Beilstein J. Org. Chem. 2020, 16, 2807–2819, doi:10.3762/bjoc.16.231

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  • water, simple alcohols. These volatile compounds can efficiently be trapped by specialised methods including the closed-loop stripping apparatus (CLSA) [4] technique or solid-phase microextraction (SPME) [5][6], and then analysed by gas chromatography–mass spectrometry (GC–MS) [7]. Through these and
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Published 19 Nov 2020
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