Encrypting messages with artificial bacterial receptors

• Pragati Kishore Prasad,
• Naama Lahav-Mankovski,
• Leila Motiei and
• David Margulies

Beilstein J. Org. Chem. 2020, 16, 2749–2756, doi:10.3762/bjoc.16.225

• simpler way to modify the bacterial membrane is by adding to X-ODN-1 a complementary strand (Y-ODN-2) that is modified with the desired functionality (Y) (Figure 1A). In this way, the structure of the artificial receptors can be ‘programmed’ by a simple self-assembly process, which provides the means to

Selective recognition of ATP by multivalent nano-assemblies of bisimidazolium amphiphiles through “turn-on” fluorescence response

• Rakesh Biswas,
• Surya Ghosh,
• Shubhra Kanti Bhaumik and
• Supratim Banerjee

Beilstein J. Org. Chem. 2020, 16, 2728–2738, doi:10.3762/bjoc.16.223

• to an n-alkyl chain at the other, underwent self-assembly in aqueous media depending on the length of the alkyl segment. The amphiphilic derivatives having n-decyl or longer chains, formed nano-assemblies with cyanic–green emission resulting from the stacked pyrene chromophores in the aggregates. The

• buffer and also in buffer containing 150 mM NaCl at physiological pH value. Furthermore, the multivalent aggregates demonstrated a significant selectivity in ATP detection over ADP, AMP and pyrophosphate. Keywords: amphiphile; ATP; excimer; multivalency; self-assembly; Introduction Supramolecular anion

• ]. In this methodology, multivalent arrays are built from comparatively smaller binding sites through self-assembly. The smaller molecular units are easier to synthesize and moreover, the morphology and the surface functionalities of the resultant multivalent structures can be tuned in a modular fashion

Enzyme-instructed morphological transition of the supramolecular assemblies of branched peptides

• Dongsik Yang,
• Hongjian He and
• Bing Xu

Beilstein J. Org. Chem. 2020, 16, 2709–2718, doi:10.3762/bjoc.16.221

• cellular environment. Keywords: acetylation; branched peptides; enzyme; nanostructures; N-terminal; responsive; self-assembly; Introduction Peptides, being able to self-assemble to exhibit emergent properties and functions [1][2][3][4][5], have received considerable attentions recently. For example

• utilizes nonlinear peptides. For example, nonribosomal peptides exist in other geometries, such as branched (e.g., bleomycin) or cyclic peptides (e.g., vancomycin) [31]. While the understanding of the synthesis of branched peptides is well-developed, the self-assembly and enzymatic conversion of branched

• peptides has received limited attention [2][32][33][34][35][36][37]. For example, Stupp et al. reported that a cell adhesion epitope, RGDS, acts as a branch to peptide amphiphiles for making hydrogels via self-assembly [34][36]. Ulijn et al. connected Fmoc-DAARRGG to a lysine side chain for incorporation

A heterobimetallic tetrahedron from a linear platinum(II)-bis(acetylide) metalloligand

• Matthias Hardy,
• Marianne Engeser and
• Arne Lützen

Beilstein J. Org. Chem. 2020, 16, 2701–2708, doi:10.3762/bjoc.16.220

• (acetylide)platinum(II) complex [Pt(L1)2(PBu3)2] as a linear metalloligand. The reaction of this metalloligand with iron(II) cations and pyridine-2-carbaldehyde according to the subcomponent self-assembly approach yielded decanuclear heterobimetallic tetrahedron [Fe4Pt6(L2)12](OTf)8. Thus, combination of

• these two design concepts – the subcomponent self-assembly strategy and the complex-as-a-ligand approach – ensured a fast and easy synthesis of large heterobimetallic coordination cages of tetrahedral shape with a diameter of more than 3 nm as a mixture of all three possible T-, S4- and C3-symmetric

• complexes; pyridylimine ligands; self-assembly; supramolecular chemistry; Introduction The understanding of the general design principles for the self-assembly of metallosupramolecular aggregates [1][2][3][4][5] allowed to access more and more complex and large assemblies over the past decades like

The B & B approach: Ball-milling conjugation of dextran with phenylboronic acid (PBA)-functionalized BODIPY

• Patrizia Andreozzi,
• Lorenza Tamberi,
• Elisamaria Tasca,
• Gina Elena Giacomazzo,
• Marta Martinez,
• Mirko Severi,
• Marco Marradi,
• Stefano Cicchi,
• Sergio Moya,
• Giacomo Biagiotti and
• Barbara Richichi

Beilstein J. Org. Chem. 2020, 16, 2272–2281, doi:10.3762/bjoc.16.188

• their derivatives have been widely used in biomedical applications, especially as drug and gene carriers, both in hydrogels and in nanoparticulate formulations [29][30][31][32]. In this regard, the incorporation of hydrophobic moieties in the branched structure of dextrans induces self-assembly into

• short reaction time, reactant economy, higher degree of functionalization, and solvent-free conditions, compared to solution-based routes are discussed. The dextran mechanochemically conjugated to PBA-BODIPY (Dex-1b, Figure 1) formed nanoparticles through self-assembly retaining the fluorescent

Synthetic approaches to bowl-shaped π-conjugated sumanene and its congeners

• Shakeel Alvi and
• Rashid Ali

Beilstein J. Org. Chem. 2020, 16, 2212–2259, doi:10.3762/bjoc.16.186

• the self-assembly. This was confirmed by single crystal structure and it was noticed that all 15 carbon atoms of the three Cp-types of the ring were interacted with the metal atoms and the six K atoms were sandwiched between the convex faces of two sumanenyl trianions. On the other hand, two years

• potential applications ranging from the chemistry perspective to materials science and technology [1][2][3][4]. As we know that bowled (curved) surfaces are universal in nature for example our planets as well as atomic orbitals possess the curvature which generally affects the charge-transport, redox, self

• -assembly, and optical properties of bowl-shaped π-conjugated systems [5][6][7][8][9]. The synthesis of π-bowls is an extremely challenging job due to the presence of unusual strain in these types of molecules, therefore, the first synthetic breakthrough in this arena came into the picture in the late

pH- and concentration-dependent supramolecular self-assembly of a naturally occurring octapeptide

• Goutam Ghosh and
• Gustavo Fernández

Beilstein J. Org. Chem. 2020, 16, 2017–2025, doi:10.3762/bjoc.16.168

• drug delivery, tissue engineering and regeneration, and as stimuli-responsive materials. Herein, we report the pH- and concentration-dependent self-assembly and conformational transformation of the newly synthesized octapeptide PEP-1. At pH 7.4, PEP-1 forms β-sheet-rich secondary structures into

• and resulting morphologies due to electrostatic repulsion between charged amino acids. PEP-1 can also form helical or random-coil secondary structures at a relatively low concentration. The obtained pH-sensitive self-assembly behavior of the target octapeptide is expected to contribute to the

• development of novel drug nanocarrier assemblies. Keywords: aqueous self-assembly; pH-responsive systems; secondary structure; self-assembled nanostructures; solid-phase peptide synthesis; Introduction The self-assembly of small molecules is a ubiquitous phenomenon in nature [1] and also has key

A dynamic combinatorial library for biomimetic recognition of dipeptides in water

• Florian Klepel and
• Bart Jan Ravoo

Beilstein J. Org. Chem. 2020, 16, 1588–1595, doi:10.3762/bjoc.16.131

• interaction of the dipeptides with themselves. For example, FF is a popular self-assembly motif, which also explains its poor solubility (≈5 mM) [23]. Hence the thermodynamic data depicts not only the association of a(CFC)2/p(CFC)2 towards FF, but also the dissociation of FF assemblies. The aromatic side

Activated carbon as catalyst support: precursors, preparation, modification and characterization

• Melanie Iwanow,
• Tobias Gärtner,
• Volker Sieber and
• Burkhard König

Beilstein J. Org. Chem. 2020, 16, 1188–1202, doi:10.3762/bjoc.16.104

• aerosol-assisted self-assembly using amphiphilic triblock copolymers as template and low-molecular weight soluble phenol resin as carbon source. The amphiphilic surfactant influences the pore size and mesostructure of the resulting spherical carbons. Finally, the template is removed by calcination [97

Synthesis of new asparagine-based glycopeptides for future scanning tunneling microscopy investigations

• Laura Sršan and
• Thomas Ziegler

Beilstein J. Org. Chem. 2020, 16, 888–894, doi:10.3762/bjoc.16.80

• self-assembly on metal surfaces [16][17]. For such novel MS applications, a new technology, i.e., ES-IBD, has been developed. ES-IBD furthermore allows for the integrity of the material [18]. The application of these new techniques to synthetic glycopeptides is expected to provide new insight into the

• investigation of the self assembly of such glycopeptides on metal surfaces will be performed via pMS and STM in further studies. Description of the starting materials 1a–f and 2a–f. Peptide coupling reactions, including the previous Fmoc cleavage. Cleavage of the fully protected peptides 6 and 7. Yields of the

The use of isoxazoline and isoxazole scaffolding in the design of novel thiourea and amide liquid-crystalline compounds

• Itamar L. Gonçalves,
• Rafaela R. da Rosa,
• Vera L. Eifler-Lima and
• Aloir A. Merlo

Beilstein J. Org. Chem. 2020, 16, 175–184, doi:10.3762/bjoc.16.20

• thioureas is the reaction of carbon disulfide with either one or two different amines [9]. Due to their self-assembly and self-organization through intermolecular hydrogen bonding, thioureas display interesting technological applications to this group of molecules, one of which explores its application in

Influence of the cis/trans configuration on the supramolecular aggregation of aryltriazoles

• Sara Tejera,
• Giada Caniglia,
• Rosa L. Dorta,
• Andrea Favero,
• Javier González-Platas and
• Jesús T. Vázquez

Beilstein J. Org. Chem. 2019, 15, 2881–2888, doi:10.3762/bjoc.15.282

• - and cis-1,2-glucopyranosyl and cyclohexyl ditriazoles, synthesized by CuAAC "click" chemistry, to form gels was studied, their physical properties determined, and the self-aggregation behavior investigated by SEM, X-ray, and EDC studies. The results revealed that self-assembly was driven mainly by π–π

• , with short and planar films or scales. This could be due to the high proportion of water in the gel and/or the presence of the three free hydroxy groups in its structure, changing its intermolecular self-assembly behavior. Various efforts were made to crystallize the obtained compounds; however, only

Self-assembled coordination thioether silver(I) macrocyclic complexes for homogeneous catalysis

• Zhen Cao,
• Aline Lacoudre,
• Cybille Rossy and
• Brigitte Bibal

Beilstein J. Org. Chem. 2019, 15, 2465–2472, doi:10.3762/bjoc.15.239

• the stoichiometry of coordination complexes. Atropisomer 1 directed the self-assembly towards the same half-space (regarding the anthracene core). The triflate anion lead to a [2 + 2] macrocycle meanwhile the more coordinating nitrate anion induced the formation of a large globular macrocycle M6L4. A

Reversible switching of arylazopyrazole within a metal–organic cage

• Anton I. Hanopolskyi,
• Soumen De,
• Michał J. Białek,
• Yael Diskin-Posner,
• Liat Avram,
• Moran Feller and
• Rafal Klajn

Beilstein J. Org. Chem. 2019, 15, 2398–2407, doi:10.3762/bjoc.15.232

• selectivity [35][36][37][38][39][40]. Consequently, arylazopyrazoles have been employed as photoresponsive gelators [41] and adhesives [42] and for controlling antimicrobial response [43][44], cell adhesion to surfaces [45], as well as DNA [46] and microtubule [47] self-assembly using light. Here, we focused

1,2,3-Triazolium macrocycles in supramolecular chemistry

• Mastaneh Safarnejad Shad,
• Pulikkal Veettil Santhini and
• Wim Dehaen

Beilstein J. Org. Chem. 2019, 15, 2142–2155, doi:10.3762/bjoc.15.211

• template-directed self-assembly procedure via an intramolecular “CuAAC click” reaction in the presence of electron-rich bisnaphtho- or bisbenzo-24-crown-8 ethers. Afterwards, the triazole groups in the catenanes were methylated. The resulting triazolium macrocycle containing catenanes 17a (DN24C8) and 17b

Multiple threading of a triple-calix[6]arene host

• Veronica Iuliano,
• Roberta Ciao,
• Emanuele Vignola,
• Carmen Talotta,
• Patrizia Iannece,
• Margherita De Rosa,
• Annunziata Soriente,
• Carmine Gaeta and
• Placido Neri

Beilstein J. Org. Chem. 2019, 15, 2092–2104, doi:10.3762/bjoc.15.207

• stereoselective formation of endo-alkyl pseudo[n]rotaxane stereoisomers. Keywords: calixarene; multiple-threading; pseudo[n]rotaxane; stereoisomers; Introduction The self-assembly [1] of smaller components to larger aggregates represents one of the most spectacular phenomena in supramolecular chemistry [2][3][4

• ]. Among the self-assembly processes, those that lead to the formation of interlocked and/or interpenetrated supramolecular structures have inspired many scientists [5][6][7][8]. The synthesis of interlocked molecules such as rotaxanes, catenanes, and high-order architectures (e.g., polyrotaxanes, suitanes

Naphthalene diimides with improved solubility for visible light photoredox catalysis

• Barbara Reiß and
• Hans-Achim Wagenknecht

Beilstein J. Org. Chem. 2019, 15, 2043–2051, doi:10.3762/bjoc.15.201

• self-assembly [43][44], as molecular sensors [45][46][47] and for organic electronics [48][49], but yet nearly completely unexplored for photoredox catalysis. Core-unsubstituted NDIs are colorless compounds with high extinction coefficients at the border between UV-A and visible light. Their

Morphology-tunable and pH-responsive supramolecular self-assemblies based on AB₂-type host–guest-conjugated amphiphilic molecules for controlled drug delivery

• Yang Bai,
• Cai-ping Liu,
• Di Chen,
• Long-hai Zhuo,
• Huai-tian Bu and
• Wei Tian

Beilstein J. Org. Chem. 2019, 15, 1925–1932, doi:10.3762/bjoc.15.188

• -responsive supramolecular self-assemblies have been constructed, the controlled drug delivery induced by morphology transitions of these supramolecular self-assemblies on the basis of host–guest-conjugated monomers (HGCMs) are few reported. In this paper, the self-assembly behaviors of AB2-type HGCMs, e.g

• stimuli-responsive supramolecular self-assemblies with regulated self-assembly morphologies due to their response to various external stimuli, such as temperature [12], light [13][14][15], redox [16][17][18], and pH [19][20]. In addition, β-cyclodextrin (β-CD), pillararene and cucurbituril have been

• -assemblies were fairly complicated, and their self-assembly behaviors could hardly effectively be regulated. Alternatively, host–guest-conjugated monomers (HGCMs) which gather host and guest units into one molecule have been studied and attracted many attentions in the field of self-assembly [35]. AB-type

Complexation of chiral amines by resorcin[4]arene sulfonic acids in polar media – circular dichroism and diffusion studies of chirality transfer and solvent dependence

• Bartosz Setner and
• Agnieszka Szumna

Beilstein J. Org. Chem. 2019, 15, 1913–1924, doi:10.3762/bjoc.15.187

• Bartosz Setner Agnieszka Szumna Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland 10.3762/bjoc.15.187 Abstract Directional self‐assembly of conformationally well-defined complexes in polar environment is still a major challenge in supramolecular

• disintegrative for these complexes. This result is quite non-intuitive and worth attention in the context of formation of supramolecular complexes in polar environment, for which DMSO is most often a first-choice solvent. Keywords: cavitands; chirality; macrocycle; resorcin[4]arene; self-assembly

• ; supramolecular chemistry; Introduction Despite of the great progress that has been made in supramolecular chemistry in polar and aqueous media, formation of discrete ordered supramolecular associates with precise patterns of noncovalent interactions still presents a challenge [1][2]. Especially self-assembly

Norbornadiene-functionalized triazatriangulenium and trioxatriangulenium platforms

• Roland Löw,
• Talina Rusch,
• Tobias Moje,
• Fynn Röhricht,
• Olaf M. Magnussen and
• Rainer Herges

Beilstein J. Org. Chem. 2019, 15, 1815–1821, doi:10.3762/bjoc.15.175

• would have to be in the switched state 1b. The second explanation, i.e., that the mixed monolayer consists of octyl-TATA 6 and the NBD-TATA 1a, seems to be more likely, since molecule 1 decays slowly under irradiation in contact with oxygen. Previous measurements have shown that self-assembly from

• solutions containing pure and vertically functionalized TATA molecules leads to the formation of stochastically mixed monolayers with a highly ordered (√19 × √19) R23.4° superstructure [22]. This would be also expected for self-assembly from solution containing 1a and 6. The composition of the adlayer on

Complexation of 2,6-helic[6]arene and its derivatives with 1,1′-dimethyl-4,4′-bipyridinium salts and protonated 4,4'-bipyridinium salts: an acid–base controllable complexation

• Jing Li,
• Qiang Shi,
• Ying Han and
• Chuan-Feng Chen

Beilstein J. Org. Chem. 2019, 15, 1795–1804, doi:10.3762/bjoc.15.173

• methenyl groups. They have been a kind of important macrocyclic host molecules during the last decades due to their unique structures and a wide range of applications in host–guest chemistry [13][14][15][16][17][18], self-assembly [19], biomedicine [20] and materials science [21][22]. The derivatives of

Reversible end-to-end assembly of selectively functionalized gold nanorods by light-responsive arylazopyrazole–cyclodextrin interaction

• Maximilian Niehues,
• Patricia Tegeder and
• Bart Jan Ravoo

Beilstein J. Org. Chem. 2019, 15, 1407–1415, doi:10.3762/bjoc.15.140

• cycles. By the introduction of AAP, previous disassembly limitations based on the photostationary states of azobenzenes could be solved. The combination photoresponsive interaction and selectively end-functionalized nanoparticles shows significant potential in the reversible self-assembly of inorganic

• –organic hybrid nanomaterials. Keywords: cyclodextrins; gold nanorods; host–guest chemistry; light-responsive materials; molecular switches; self-assembly; Introduction Metallic nanomaterials have received intense and interdisciplinary interest due to their unique optical [1], electronic [2][3] and

• the complete surface because of its cell toxicity [17], hence strategies for replacing this coating are desirable. Host–guest chemistry is a supramolecular interaction that is tailor-made for self-assembly due to its lock–key mechanism and has been applied in our and other groups to various

Complexation of a guanidinium-modified calixarene with diverse dyes and investigation of the corresponding photophysical response

• Yu-Ying Wang,
• Yong Kong,
• Zhe Zheng,
• Wen-Chao Geng,
• Zi-Yi Zhao,
• Hongwei Sun and
• Dong-Sheng Guo

Beilstein J. Org. Chem. 2019, 15, 1394–1406, doi:10.3762/bjoc.15.139

• supramolecular cavities [25]. Calixarenes are the third generation of macrocyclic compounds composed of phenolic units bridged with methylene groups at the o-positions of phenolic hydroxy groups [9]. We have focused on molecular recognition and self-assembly of water-soluble calixarene derivatives for a long

Selective detection of DABCO using a supramolecular interconversion as fluorescence reporter

• Indrajit Paul,
• Debabrata Samanta,
• Sudhakar Gaikwad and
• Michael Schmittel

Beilstein J. Org. Chem. 2019, 15, 1371–1378, doi:10.3762/bjoc.15.137

• compounds. Keywords: copper; detection; fluorescence; interconversion; macrocycles; self-assembly; self-sorting; zinc porphyrin; Introduction Since dynamic multicomponent supramolecular structures are nowadays abundant [1][2], the weak intercomponent binding [3][4][5][6][7][8][9] is often instrumentalized

• through the expected 1H NMR pattern in particular as the signal of proton h-H in ligand 1 is shifted diagnostically from 6.28 to 6.08 ppm due to the shielding of the lutidine unit by the π-system of ligand 2 (Figure 2). Self-assembly in a similar manner using [Cu(CH3CN)4]PF6 and ligands 1, 2 and 4 (2:1:1

Self-assembly behaviors of perylene- and naphthalene-crown macrocycle conjugates in aqueous medium

• Xin Shen,
• Bo Li,
• Tiezheng Pan,
• Jianfeng Wu,
• Yangxin Wang,
• Jie Shang,
• Yan Ge,
• Lin Jin and
• Zhenhui Qi

Beilstein J. Org. Chem. 2019, 15, 1203–1209, doi:10.3762/bjoc.15.117

• absorption and fluorescence spectra of these PDI/NDI derivatives in different solvents as well as their morphologies were investigated. Keywords: aqueous medium; crown ether; macrocycle; perylene diimide derivative; self-assembly; Introduction Owing to their unique physicochemical properties, self

• -assemblies have been recognized as a type of exciting nanomaterials with tremendous potential for research and commercial applications [1][2][3][4][5][6]. Thanks to the development of supramolecular chemistry, the ordered structures could be obtained through programmed self-assembly coupled with covalent

• , little was known to the self-assembly behaviors of B21C7 crown macrocycle functionalized PDIs/NDIs in aqueous solution, even though there have been several reports about crown ether-functionalized PDIs or NDIs, which mostly focused on their interactions with metal ions [82][83][84][85]. Herein, we