Linker, loading, and reaction scale influence automated glycan assembly

• Marlene C. S. Dal Colle,
• Manuel G. Ricardo,
• Nives Hribernik,
• José Danglad-Flores,
• Peter H. Seeberger and
• Martina Delbianco

Beilstein J. Org. Chem. 2023, 19, 1015–1020, doi:10.3762/bjoc.19.77

• observed in the chromatograms of the crudes (Figure 3B). MS analysis showed the presence of capped linker (*), capped dimer (†), and Lev-containing dimer (‡) (see Figures S5 and S7 in Supporting Information File 1). No significant variations were noticed within each series of experiments, with slightly

• showed the presence of capped linker (*), capped dimer (†), and Lev-containing dimer (‡). The monosaccharides are represented following the symbol nomenclature for glycans (SNFG). Supporting Information Supporting Information File 120: Experimental procedures and characterization data. Funding We thank

Construction of hexabenzocoronene-based chiral nanographenes

• Ranran Li,
• Di Wang,
• Shengtao Li and
• Peng An

Beilstein J. Org. Chem. 2023, 19, 736–751, doi:10.3762/bjoc.19.54

• pursuit of HBC-tetramer-based supertwistacene (compound 115 in Scheme 12), Wang and co-workers synthesized a chiral HBC-dimer 46 [46], in which two HBC units structurally shared one benzene ring (Scheme 6). 1,4-Bis((4-(tert-butyl)phenyl)ethynyl)benzene reacted with tetracyclone 2 through a two-fold Diels

• the P,P, and M,M enantiomers. The isomerization barrier was determined as 44.7 kcal/mol at 260 °C by HPLC analysis. Meanwhile, Campaña and co-workers reported a similar chiral, tropone-containing HBC-dimer 53 [47]. Ketone 47 was transformed to compound 48 by reacting with 1-iodo-4-(phenylethynyl

• trimethylsilylacetylene and monobromo 78 afforded HBD-dimer 79. Then the Diels–Alder reaction of compound 79 and tetracyclone 80 gave compound 81 in a medium yield. Due to the crowdedness of adjacent HBC units, a chiral [7]helicene 82 was formed during the Scholl reaction of precursor 81. Campaña and co-workers

Cassane diterpenoids with α-glucosidase inhibitory activity from the fruits of Pterolobium macropterum

• Sarot Cheenpracha,
• Ratchanaporn Chokchaisiri,
• Lucksagoon Ganranoo,
• Sareeya Bureekaew,
• Thunwadee Limtharakul and
• Surat Laphookhieo

Beilstein J. Org. Chem. 2023, 19, 658–665, doi:10.3762/bjoc.19.47

• resulted in the isolation of one new cassane diterpenoid, 14β-hydroxycassa-11(12),13(15)-dien-12,16-olide (1), one new caged cassane diterpenoid dimer featuring a 6/6/6/6/6/5/6/6/6 nonacyclic ring system, 6′-acetoxypterolobirin B (3), and one known compound (Figure 1). Results and Discussion The fruits of

• diterpenoid dimer with unique 6/6/6/6/6/5/6/6/6 nonacyclic ring system. The minor difference was the additional acetoxy group (δH 2.10) at C-6′. This conclusion was suggested by the HMBC correlations (Figure 2) from H-6′ to 6′-OCOCH3 (δC 170.4) and C-10′ (δC 36.8), and from H3-20′ to C-5′ (δC 55.1) and C-10

Phenanthridine–pyrene conjugates as fluorescent probes for DNA/RNA and an inactive mutant of dipeptidyl peptidase enzyme

• Josipa Matić,
• Tana Tandarić,
• Marijana Radić Stojković,
• Filip Šupljika,
• Zrinka Karačić,
• Ana Tomašić Paić,
• Lucija Horvat,
• Robert Vianello and
• Lidija-Marija Tumir

Beilstein J. Org. Chem. 2023, 19, 550–565, doi:10.3762/bjoc.19.40

• Information File 1). Compound Phen-Py-1 showed high, micromolar/submicromolar affinities for all examined polynucleotides. The binding of Phen-Py-1 to polynucleotides possibly led to the unstacking of intramolecular pyrene–phenanthridine dimer and consequent excimer fluorescence quenching independently of the

Transition-metal-catalyzed domino reactions of strained bicyclic alkenes

• Austin Pounder,
• Eric Neufeld,
• Peter Myler and
• William Tam

Beilstein J. Org. Chem. 2023, 19, 487–540, doi:10.3762/bjoc.19.38

Transition-metal-catalyzed C–H bond activation as a sustainable strategy for the synthesis of fluorinated molecules: an overview

• Louis Monsigny,
• Floriane Doche and
• Tatiana Besset

Beilstein J. Org. Chem. 2023, 19, 448–473, doi:10.3762/bjoc.19.35

• 30% yield. A careful monitoring of the reaction unveiled the rapid formation of the CF3SeSeCF3 dimer, which could be the active trifluoromethylselenolating reagent in this transformation. In 2022, Magnier, Billard and co-workers applied the previous methodology to the trifluoromethylselenolation of

Mechanochemical solid state synthesis of copper(I)/NHC complexes with K₃PO₄

• Ina Remy-Speckmann,
• Birte M. Zimmermann,
• Mahadeb Gorai,
• Martin Lerch and
• Johannes F. Teichert

Beilstein J. Org. Chem. 2023, 19, 440–447, doi:10.3762/bjoc.19.34

• procedure: steel vessel (12 mL), 6 steel balls (1 cm diameter), 450 rpm, 4 h). (dimer = [(NHC)2Cu+]Cl−). Supporting Information Supporting Information File 36: General procedures, experimental details, analytical data and copies of NMR spectra. Acknowledgements Prof. Dr. Martin Oestreich (TU Berlin) is

Combretastatins D series and analogues: from isolation, synthetic challenges and biological activities

• Jorge de Lima Neto and
• Paulo Henrique Menezes

Beilstein J. Org. Chem. 2023, 19, 399–427, doi:10.3762/bjoc.19.31

• ether moiety. The best result was obtained when phenol 101 was subjected to anodic oxidation, leading to the formation of spiro-dimer 102 in 61% yield. Protection of the alcohol using TBSOTf followed by cyclic ether cleavage and re-aromatization gave compound 104. Subsequent dehalogenation followed by

CuAAC-inspired synthesis of 1,2,3-triazole-bridged porphyrin conjugates: an overview

• Dileep Kumar Singh

Beilstein J. Org. Chem. 2023, 19, 349–379, doi:10.3762/bjoc.19.29

• ascorbate in DMSO (Scheme 9). According to UV–vis and circular dichroism (CD) spectrum measurements, the authors state that the formation of the dimer of porphyrin 50 can be attributed to DNA hybridization and through-space electronic interactions. In this investigation, it was found that the DNA serves as

• -porphyrin and copper-corrole moieties upon photoexcitation. Moreover, the theoretical calculations suggested that the porphyrin moiety acted as a donor while the corrole unit acted as an acceptor in dimer 60. Recently S. Y. Yap and co-workers [38] used “click chemistry” to link a water-soluble porphyrin

Group 13 exchange and transborylation in catalysis

• Dominic R. Willcox and
• Stephen P. Thomas

Beilstein J. Org. Chem. 2023, 19, 325–348, doi:10.3762/bjoc.19.28

• frustrated Lewis pair (FLP)-mediated C‒H functionalisation (Scheme 4a). Using computational analysis, the mechanism of the reaction was proposed to occur by borane dimer [9]2 dissociation, followed by a concerted deprotonation of the heterocycle 10 to give a zwitterionic intermediate 11. The zwitterion then

Synthesis and reactivity of azole-based iodazinium salts

• Thomas J. Kuczmera,
• Annalena Dietz,
• Andreas Boelke and
• Boris J. Nachtsheim

Beilstein J. Org. Chem. 2023, 19, 317–324, doi:10.3762/bjoc.19.27

• mixture was stirred for 14 d at 65 °C. a6.00 mmol scale, T = 50 °C, bT = 40 °C, cT = 80 °C, t = 6 d, dt = 7 d, e0.3 equiv of DCM were included in the product. Single crystal structures (ORTEP drawing with 50% probability) of the pyrazole-coordinated salt 5bb (dimer, a second structure was omitted for

An accelerated Rauhut–Currier dimerization enabled the synthesis of (±)-incarvilleatone and anticancer studies

• Tharun K. Kotammagari,
• Sweta Misra,
• Sayantan Paul,
• Sunita Kunte,
• Rajesh G. Gonnade,
• Manas K. Santra and
• Asish K. Bhattacharya

Beilstein J. Org. Chem. 2023, 19, 204–211, doi:10.3762/bjoc.19.19

• structure of rac-incarvilleatone (1) was determined by spectroscopic methods and single crystal X-ray analysis. However, they were unable to obtain single crystals of either of the enantiomers (−)-incarvilleatone [(−)-1] and (+)-incarvilleatone [(+)-1]. (±)-Incarviditone (2), a novel benzofuranone dimer was

• isolated from I. delavayi along with known (±)-rengyolone (3) [2]. (±)-Incarviditone (2) presents a new carbon-skeleton by being the first benzofuranone dimer connected by a C–C bond. The cytotoxicity of (±)-incarviditone (2) has been assayed against cell lines A549, LOVO, HL-60, 6TCEM, and HepG2 and

1,4-Dithianes: attractive C2-building blocks for the synthesis of complex molecular architectures

• Bram Ryckaert,
• Ellen Demeyere,
• Frederick Degroote,
• Hilde Janssens and
• Johan M. Winne

Beilstein J. Org. Chem. 2023, 19, 115–132, doi:10.3762/bjoc.19.12

• cyclic hemithioacetal dimer). The chemistry and synthetic applications of reagent 4 and related α-thiocarbonyl substances have been reviewed in detail elsewhere [27], and they are rarely used as building blocks for 1,4-dithiane-type targets. For the synthesis of 5,6-dihydro-1,4-dithiin (2), several

• dependence [95]. On the other hand, simple benzyl cations can undergo more controlled (3 + 2) annulations, as is illustrated by the long-known Friedel–Crafts-type acid-catalyzed cascade reaction of styrene leading to the cyclic styrene dimer 86 (Scheme 13c) [96][97]. This (3 + 2) cycloaddition reactivity of

A novel spirocyclic scaffold accessed via tandem Claisen rearrangement/intramolecular oxa-Michael addition

• Anastasia Vepreva,
• Alexander Yanovich,
• Dmitry Dar’in,
• Grigory Kantin,
• Alexander Bunev and
• Mikhail Krasavin

Beilstein J. Org. Chem. 2022, 18, 1649–1655, doi:10.3762/bjoc.18.177

• synthesized as detailed in Scheme 3. The O–H insertion reaction worked well for electron-neutral or electron-rich phenols. The presence of chlorine substituents (such as 4-Cl or 2,4-diCl) in the phenol component drastically diminished the yield and led to the formation of the earlier reported DAS dimer [16

Preparation of β-cyclodextrin-based dimers with selectively methylated rims and their use for solubilization of tetracene

• Konstantin Lebedinskiy,
• Volodymyr Lobaz and
• Jindřich Jindřich

Beilstein J. Org. Chem. 2022, 18, 1596–1606, doi:10.3762/bjoc.18.170

• better effectiveness than other tested supramolecular hosts. Keywords: cyclodextrin; dimer; methylation; solubilization; tetracene; Introduction Cyclodextrins (CDs) are cyclic oligomers of glucose that play an important role in supramolecular chemistry [1]. The structure of any CD contains a

• propargyl-containing compounds, including other CDs, to form a dimer [12]. Usually, such reactions proceed with a Cu(I) catalyst [27]; however, Cu(I) can be generated in situ by the reduction of Cu(II) [12][28] or by the dissolution of metal copper [29]. Moreover, the load of the catalyst varies from

• catalytical amounts (0.02 equiv) [27] to semi-equivalent [12]. Optimal conditions for a click reaction are a subject to discovery in every case, because temperature, microwave or ultrasonic irradiation, and type of catalyst strongly influence the reaction time and yields. In the preparation of dimer 4, the

Microelectrode arrays, electrosynthesis, and the optimization of signaling on an inert, stable surface

• Kendra Drayton-White,
• Siyue Liu,
• Yu-Chia Chang,
• Sakashi Uppal and
• Kevin D. Moeller

Beilstein J. Org. Chem. 2022, 18, 1488–1498, doi:10.3762/bjoc.18.156

• pyrene to form the exciplex dimer that fluoresces in the red region of the spectrum and does not self-quench. A fluorescence microscope was then used to take an image of the array, and the image used to quantify the fluorescence, and thereby the amount of material present, at each region of the array

Computational model predicts protein binding sites of a luminescent ligand equipped with guanidiniocarbonyl-pyrrole groups

• Neda Rafieiolhosseini,
• Matthias Killa,
• Thorben Neumann,
• Niklas Tötsch,
• Jean-Noël Grad,
• Alexander Höing,
• Thies Dirksmeyer,
• Jochen Niemeyer,
• Christian Ottmann,
• Shirley K. Knauer,
• Michael Giese,
• Jens Voskuhl and
• Daniel Hoffmann

Beilstein J. Org. Chem. 2022, 18, 1322–1331, doi:10.3762/bjoc.18.137

• -3-3ζ homodimer [14]. Very recently the survivin–histone H3 interaction was disrupted using a GCP dimer, which led to decreased cancer cell proliferation [8]. A major problem in this context is the readout of binding events, which is currently mainly achieved by indirect measurements. One approach to

• potential supramolecular ligand for 14-3-3ζ. We synthesized a GCP-Lys dimer coupled via Cu(I)-catalyzed click reaction to the chosen emitter equipped with two azide functions (Figure 1 and Supporting Information File 1) and investigated the photophysical properties in detail (Supporting Information File 1

• of the omega in the case without C-Raf; thirdly, above the pore between the two binding grooves of the omega in the presence of C-Raf. Overall, the clustering and the pattern of energies reflect the C2 symmetry of the 14-3-3ζ dimer. Minimum energy conformations Closer inspection of energies reveals

Polymer and small molecule mechanochemistry: closer than ever

• José G. Hernández

Beilstein J. Org. Chem. 2022, 18, 1225–1235, doi:10.3762/bjoc.18.128

• is observed [46]. This difference is believed to be related to the exertion of tensile forces along the glycosidic linkage of the polymer chain during ball milling, which may lower the activation energy for the depolymerization of chitin. Indeed, DFT calculations using the N-acetylglucosamine dimer

• as the model compound showed that the application of pulling forces to selected atoms in the dimer perturb the reaction, making the depolymerization easier to occur [45]. In contrast, no change in the activation energy of the deacetylation step was observed with the introduction of the pulling forces

Derivatives of benzo-1,4-thiazine-3-carboxylic acid and the corresponding amino acid conjugates

• Péter Kisszékelyi,
• Tibor Peňaška,
• Klára Stankovianska,
• Mária Mečiarová and
• Radovan Šebesta

Beilstein J. Org. Chem. 2022, 18, 1195–1202, doi:10.3762/bjoc.18.124

• different temperatures under classical conditions and even under MWI (Table 1, entries 12 and 13). Also, reactions with 6,6'-disulfanediylbis(3-methoxyaniline) were unsuccessful. Having observed dimer formation during the syntheses of benzothiazines, we have attempted to synthesize the corresponding dimer

• directly. To that end, we attempted reactions from aminothiol 8a as well as from the corresponding disulfide, both at room temperature and under MWI. In these experiments, the yield of dimer 11a was in the range of 10–34%. We also tried to enhance the oxidative dimerization using a mild oxidizing agent

• . The use of 2,3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ) in 1,4-dioxane afforded the dimer 11a in a slightly better yield of 46% (Scheme 2). For all the prepared benzothiazine derivatives 10 we observed some degree of instability. The derivatives were reasonably stable in the solid state but usually

Synthesis of tryptophan-dehydrobutyrine diketopiperazine and biological activity of hangtaimycin and its co-metabolites

• Houchao Xu,
• Anne Wochele,
• Minghe Luo,
• Gregor Schnakenburg,
• Yuhui Sun,
• Heike Brötz-Oesterhelt and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2022, 18, 1159–1165, doi:10.3762/bjoc.18.120

• material that was obtained as a viscous oil, failed. The X-ray crystallographic analysis of (rac)-4 showed an interesting dimer interaction of its enantiomers through hydrogen bridges between the amide (NH-CO) groups (Figure 2, for crystallographic parameters cf. Supporting Information File 1, Table S1

• ), that may support its easy crystallisation in comparison to enantiomerically enriched 4. Note that the dimer between the two enantiomers of 4 is achiral which allows for a regular packing of (rac)-4 in the crystal. In contrast, a hypothetical similar interaction between two molecules of the same

• enantiomer can only lead to a chiral dimer that, if formed at all, may crystallise less efficiently. Bioactivity testing Previous reports have mentioned that TDD (4) exhibits no antibacterial activity, without providing information about the test organisms used [9]. For this reason, and because of the above

A Streptomyces P450 enzyme dimerizes isoflavones from plants

• Run-Zhou Liu,
• Shanchong Chen and
• Lihan Zhang

Beilstein J. Org. Chem. 2022, 18, 1107–1115, doi:10.3762/bjoc.18.113

• challenging and often requires prefunctionalization of the substrate monomers, costly metal ligands, or tedious protection–deprotection steps [6][7][8][9]. With the advance of biosynthetic studies on natural products, a number of enzyme classes that are responsible for the dimer formation have been identified

• contain isoflavones. These cultures did not produce 1–3, but daidzein (4) supplementation in ISP-2 liquid medium restored the production of 1–3, suggesting that S. cattleya utilizes exogenous isoflavone to form the dimer products 1–3 (Figure 2a). A comparison of the 1H NMR spectra of 1 and 4 (Tables S3

• dimer with a rare 5,8’’ biaryl coupling skeleton. Likewise, C-8’’ was assigned as one of the coupling sites of 2. Three B-ring protons, H-2’ (δH 7.38, d), H-5’ (δH 7.02, d), and H-6’ (δH 7.48, dd), suggested that C-3’ was another coupling site. Thus, the structure of 2 was established as a 3’,8

First series of N-alkylamino peptoid homooligomers: solution phase synthesis and conformational investigation

• Maxime Pypec,
• Laurent Jouffret,
• Claude Taillefumier and
• Olivier Roy

Beilstein J. Org. Chem. 2022, 18, 845–854, doi:10.3762/bjoc.18.85

• solid state by X-ray crystallography (dimer 2), and implicit solvent QM geometry optimizations. N-(Methylamino)peptoids were found to preferentially adopt trans amide bonds with the side chain N–H bonds oriented approximately perpendicular to the amide plane. This orientation is conducive to local

• antiparallel arrangement of mirror image molecules held together via two hydrogen bonds in the crystal lattice of dimer 2. Keywords: cis/trans isomerism; peptoid; structure; trans-inducing side chain; Introduction The term “peptoids” refers to the family of artificial oligo(poly)mers consisting of N

• to the mixed anhydride activating method using isobutyl chloroformate (IBCF) in the presence of N-methylmorpholine (NMM) at 0 °C in DMF for 10 min, followed by the addition of hydrazine 1a [43][44]. The best results were obtained with two equivalents of preformed mixed anhydride, pure dimer 2d being

Unusual highly diastereoselective Rh(II)-catalyzed dimerization of 3-diazo-2-arylidenesuccinimides provides access to a new dibenzazulene scaffold

• Anastasia Vepreva,
• Alexander S. Bunev,
• Andrey Yu. Kudinov,
• Grigory Kantin,
• Mikhail Krasavin and
• Dmitry Dar’in

Beilstein J. Org. Chem. 2022, 18, 533–538, doi:10.3762/bjoc.18.55

• of DAS 1a in dichloromethane in the presence of Rh2(esp)2 (0.1 mol %) led to the formation of a mixture of the major product ‒ dimer 2a, and minor indene 3a (Table 1, entry 1). The target dimer was isolated in 74% yield as a single diastereomer. Its structure was reliably confirmed by X-ray analysis

• of DAS 1i containing a trifluoromethyl group in the arylidene ring (Table 1, entry 9). In the latter case, the negative effect of the presence of the electron-withdrawing group also manifested itself in a significant decrease in the yield of the target dimer 2 due to the formation of unidentified

• byproducts. For the 3-methoxy-substituted DAS 1n, the main reaction outcome was the unimolecular cyclization, leading to a mixture of regioisomeric indenes (Table 1, entry 14) while the target dimer 2n was obtained in low (12%) yield. A similar result was obtained earlier in the study of DAS in the reaction

Mechanistic studies of the solvolysis of alkanesulfonyl and arenesulfonyl halides

• Malcolm J. D’Souza and
• Dennis N. Kevill

Beilstein J. Org. Chem. 2022, 18, 120–132, doi:10.3762/bjoc.18.13

• by a dimer can be described as an SN3 process and, presumably, attack by a trimer would be SN4 and so forth. There is nothing wrong with either of these formulations provided the processes are suitably defined. Such a definition and explanation are given in Scheme 1 of the 2009 paper [69] by Bentley

Effect of a twin-emitter design strategy on a previously reported thermally activated delayed fluorescence organic light-emitting diode

• Ettore Crovini,
• Zhen Zhang,
• Yu Kusakabe,
• Yongxia Ren,
• Yoshimasa Wada,
• Bilal A. Naqvi,
• Prakhar Sahay,
• Tomas Matulaitis,
• Stefan Diesing,
• Ifor D. W. Samuel,
• Wolfgang Brütting,
• Katsuaki Suzuki,
• Hironori Kaji,
• Stefan Bräse and
• Eli Zysman-Colman

Beilstein J. Org. Chem. 2021, 17, 2894–2905, doi:10.3762/bjoc.17.197

• %, with Commission Internationale de l’Éclairage coordinate of (0.22, 0.47), at 1 mA cm−2. Keywords: blue emitters; dimer; indolocarbazole; orientation; outcoupling effect; solution-processed OLEDs; TADF emitters; triazine; Introduction Organic thermally activated delayed fluorescence (TADF) materials

• light outcoupling in the device. Results and Discussion Synthesis The oxidative coupling conditions for the synthesis of carbazole dimers were initially applied to access the dimer of ICzTRZ [25][26]. Treating ICzTRZ with FeCl3 in dichloromethane (DCM) at room temperature for 12 hours did not lead to