6’-Fluoro[4.3.0]bicyclo nucleic acid: synthesis, biophysical properties and molecular dynamics simulations

• Sibylle Frei,
• Andrei Istrate and
• Christian J. Leumann

Beilstein J. Org. Chem. 2018, 14, 3088–3097, doi:10.3762/bjoc.14.288

• orientation and the six-membered ring in a twist-boat conformation (Figure 3b). Approximately 1 kJ/mol higher in energy was the second conformer where the furanose unit adopted a C3’-exo arrangement and the cyclohexene unit a half-chair conformation (Figure 3c). The C(5’) hydroxy group adopted in both

Copper(I)-catalyzed tandem reaction: synthesis of 1,4-disubstituted 1,2,3-triazoles from alkyl diacyl peroxides, azidotrimethylsilane, and alkynes

• Muhammad Israr,
• Changqing Ye,
• Munira Taj Muhammad,
• Yajun Li and
• Hongli Bao

Beilstein J. Org. Chem. 2018, 14, 2916–2922, doi:10.3762/bjoc.14.270

• excellent yields. Phenylacetylene with an electron-withdrawing bromo-, chloro-, or fluoro substituent afforded the corresponding products 3h–n in up to 92% yield, while phenylacetylenes with electron-donating groups gave the corresponding products 3b–g and 3o–q in up to 86% yield. Instead of a six-membered

• ring, five-membered heteroaromatics (ethynylthiophenes) have also been used, and afforded the desired products 3s and 3t in up to 76% yield. Terminal aliphatic alkynes were then examined and it was found that they could smoothly deliver the corresponding 1,2,3-triazoles 3u–z with high yields

Ring-opening metathesis of some strained bicyclic systems; stereocontrolled access to diolefinated saturated heterocycles with multiple stereogenic centers

• Zsanett Benke,
• Melinda Nonn,
• Márton Kardos,
• Santos Fustero and
• Loránd Kiss

Beilstein J. Org. Chem. 2018, 14, 2698–2707, doi:10.3762/bjoc.14.247

• that unsaturated bicyclic β-lactams (±)-2 and (±)-8, bearing the fused four-membered and six-membered ring system, have a lower ring strain than bicyclic, unsaturated γ-lactones (±)-3, (±)-4 and (±)-9. Because of their higher constraint, the latter compounds underwent ring opening providing the

• carbene-based catalysts (G-2 and HG-2) were effective in case of bridged lactones with a six-membered ring part in their framework, with O-functionalities (±)-3, (±)-4, (±)-9 and (±)-14. In case of isoxazoline-fused derivative (±)-16 G-1 gave the best result, while in case of lactam (±)-18 HG-1 was the

• -membered ring system thus possessing ring strain, did not afford any ROM products. Interestingly, lactone (±)-3 in the presence of second generation catalysts (G-2 and HG-2) provided the corresponding ring-opened compound (±)-5 albeit with modest yields (Scheme 3, Table 1). In the presence of G-2 and HG-2

Synthesis of eunicellane-type bicycles embedding a 1,3-cyclohexadiene moiety

• Alex Frichert,
• Peter G. Jones and
• Thomas Lindel

Beilstein J. Org. Chem. 2018, 14, 2461–2467, doi:10.3762/bjoc.14.222

• of bicyclic diterpenoids sharing the eunicellane skeleton. Closure of the ten-membered ring by pinacol cyclization proved to be possible, if the six-membered ring is either aromatic or a 1,3-cyclohexadiene, but failed for systems with two sp3 centers as bridgeheads. The ten-membered ring of benzene

Recent applications of chiral calixarenes in asymmetric catalysis

• Mustafa Durmaz,
• Erkan Halay and
• Selahattin Bozkurt

Beilstein J. Org. Chem. 2018, 14, 1389–1412, doi:10.3762/bjoc.14.117

• six-membered-ring transition state similar to that described earlier by Feng et al. [69]. Epoxidation In 2014 Sciotto et al. reported the synthesis of two novel calix[4]arene–salen ligands 105a,b in 1,3-alternate conformation. Reaction of the salen ligands with appropriate metal acetate salt according

Stepwise radical cation Diels–Alder reaction via multiple pathways

• Ryo Shimizu,
• Yohei Okada and
• Kazuhiro Chiba

Beilstein J. Org. Chem. 2018, 14, 704–708, doi:10.3762/bjoc.14.59

• one of the most powerful methods to construct six-membered ring systems. A “normal” Diels–Alder reaction must consider an electronic matching of the substrates, with an electron-rich diene and electron-deficient dienophile as the general combination. Although having both an electron-rich diene and

• cation 1·+ is then trapped by 2,3-dimethyl-1,3-butadiene (2) to construct the acyclic radical cation intermediate A·+, which is potentially converted into the aromatic radical cation with a six-membered ring (3·+) or a four-membered ring (4·+) via rapid intramolecular SET processes. It can be

• rationalized that the six-membered ring closure of the acyclic radical cation intermediate (A·+) would be a stepwise process, leading to the Diels–Alder adduct 3 as an approximately cis/trans = 1:1 mixture. However, since the oxidative SET-triggered rearrangement of the vinylcyclobutane 4 gives the Diels–Alder

Liquid-assisted grinding and ion pairing regulates percentage conversion and diastereoselectivity of the Wittig reaction under mechanochemical conditions

• Kendra Leahy Denlinger,
• Lianna Ortiz-Trankina,
• Preston Carr,
• Kingsley Benson,
• Daniel C. Waddell and
• James Mack

Beilstein J. Org. Chem. 2018, 14, 688–696, doi:10.3762/bjoc.14.57

• mechanism of the E selectivity is similar. The intermediate (Scheme 1) allows for a reaction pathway involving the formation of a six-membered ring instead of the traditional four-membered oxaphosphetane ring of the Wittig reaction. This six-membered ring may account for the higher E selectivity due to the

• present, its dielectric constant will be the determining factor in diastereoselectivity, consistent with our previous observations. Counter-ion pairing We further hypothesized that, if the benzyl benzoate is formed through a six-membered ring intermediate to give (E)-stilbene as the major product, then

• cation into the mechanism, a six-membered ring, similar to that proposed in Scheme 2, would result (Figure 3). Based on this hypothesis, in addition to the oxygen and phosphorous forming a stable bond, the alkali metal and halide must form a stable contact ion pair as well. These interactions and the

5-Aminopyrazole as precursor in design and synthesis of fused pyrazoloazines

• Ranjana Aggarwal and
• Suresh Kumar

Beilstein J. Org. Chem. 2018, 14, 203–242, doi:10.3762/bjoc.14.15

• , reactions of 5-aminopyrazoles with various reagents to construct a six membered ring with pyrazole are discussed. The synthetic methods have been arranged in order of the ascending number of heteroatoms in the azine ring. The systematic arrangement in this review explores the possibility of providing

CF₃SO₂X (X = Na, Cl) as reagents for trifluoromethylation, trifluoromethylsulfenyl-, -sulfinyl- and -sulfonylation and chlorination. Part 2: Use of CF₃SO₂Cl

• Hélène Chachignon,
• Hélène Guyon and
• Dominique Cahard

Beilstein J. Org. Chem. 2017, 13, 2800–2818, doi:10.3762/bjoc.13.273

• trifluoromethylation of (hetero)arenes under photoredox catalysis. Direct C–H trifluoromethylation of five- and six-membered ring (hetero)arenes using heterogeneous catalysis. Trifluoromethylation of terminal olefins. Trifluoromethylation of enamides. (E)-Selective trifluoromethylation of β-nitroalkenes under

Ring-size-selective construction of fluorine-containing carbocycles via intramolecular iodoarylation of 1,1-difluoro-1-alkenes

• Takeshi Fujita,
• Ryo Kinoshita,
• Tsuyoshi Takanohashi,
• Naoto Suzuki and
• Junji Ichikawa

Beilstein J. Org. Chem. 2017, 13, 2682–2689, doi:10.3762/bjoc.13.266

• -difluoroallylic moiety, which might perturb cationic charge distribution in the corresponding cyclic iodonium intermediates. The aryl group in the 2-position (at the carbon atom in β-position to the fluorine substituents) promoted a six-membered-ring closure, most likely because of the localization of cationic

A Brønsted base-promoted diastereoselective dimerization of azlactones

• Danielle L. J. Pinheiro,
• Gabriel M. F. Batista,
• Pedro P. de Castro,
• Leonã S. Flores,
• Gustavo F. S. Andrade and
• Giovanni W. Amarante

Beilstein J. Org. Chem. 2017, 13, 2663–2670, doi:10.3762/bjoc.13.264

• shown in Figure 3. Furthermore, a six-membered ring involving the salt cation, the azlactone ring and the enolate might be involved in the addition step. Irreversible intramolecular cyclization of 4 gave 5 (for a reaction reversibility study of product 2h, see Supporting Information File 1), eventually

What contributes to an effective mannose recognition domain?

• Christoph P. Sager,
• Deniz Eriş,
• Martin Smieško,
• Rachel Hevey and
• Beat Ernst

Beilstein J. Org. Chem. 2017, 13, 2584–2595, doi:10.3762/bjoc.13.255

• the six-membered ring counterpart, effectively increasing the entropic cost of binding to FimHLD (I), while the enthalpic fingerprint observed for both ligands was identical. However, depending on its needs, UPEC can vary the conformational state of FimH. In the unbound state, FimH exhibits the low

Asymmetric synthesis of propargylamines as amino acid surrogates in peptidomimetics

• Matthias Wünsch,
• David Schröder,
• Tanja Fröhr,
• Lisa Teichmann,
• Sebastian Hedwig,
• Nils Janson,
• Clara Belu,
• Jasmin Simon,
• Shari Heidemeyer,
• Philipp Holtkamp,
• Jens Rudlof,
• Lennard Klemme,
• Alessa Hinzmann,
• Beate Neumann,
• Hans-Georg Stammler and
• Norbert Sewald

Beilstein J. Org. Chem. 2017, 13, 2428–2441, doi:10.3762/bjoc.13.240

• azide, respectively [105][106]. As none of these requirements are met in the case of 6wx and 7wx, it is assumed, that the preorientation of the azide and the alkyne together with the formation of an energetically favored six-membered ring are the driving forces. As hexose scaffolds similar to 13w and

One-pot syntheses of blue-luminescent 4-aryl-1H-benzo[f]isoindole-1,3(2H)-diones by T3P^® activation of 3-arylpropiolic acids

• Melanie Denißen,
• Alexander Kraus,
• Guido J. Reiss and
• Thomas J. J. Müller

Beilstein J. Org. Chem. 2017, 13, 2340–2351, doi:10.3762/bjoc.13.231

• structure determination of compound 4b (Figure 1). The twist angle of the phenyl substituent (ring A) and the 1H-pyrrole-2,5-dionyl moiety is 51.37(7)°, whereas the p-anisyl substituent (ring B) is considerably twisted against the adjacent six-membered ring by 70.95(7)° (Figure 1) [50]. Upon slightly

Accessing simply-substituted 4-hydroxytetrahydroisoquinolines via Pomeranz–Fritsch–Bobbitt reaction with non-activated and moderately-activated systems

• Marco Mottinelli,
• Mathew P. Leese and
• Barry V. L. Potter

Beilstein J. Org. Chem. 2017, 13, 1871–1878, doi:10.3762/bjoc.13.182

• occurred only in the para-position. However, when 70% HClO4 was used, compound 22 afforded exclusively the double ring-closed product 25 (Scheme 8), analogous to 21. Presumably, in this case the six-membered ring para-cyclization may occur first followed by that directed by the six ring meta-position

Iodoarene-catalyzed cyclizations of N-propargylamides and β-amidoketones: synthesis of 2-oxazolines

• Somaia Kamouka and
• Wesley J. Moran

Beilstein J. Org. Chem. 2017, 13, 1823–1827, doi:10.3762/bjoc.13.177

• the acid to TFA or changing the solvent to CH2Cl2 led to significantly lower yields of 6a (Table 1, entries 5 and 6). Reducing the number of equivalents of oxidant and/or acid also led to lower yields (Table 1, entries 7–9). Importantly, formation of the six-membered ring was not observed under any

Synthesis of alkynyl-substituted camphor derivatives and their use in the preparation of paclitaxel-related compounds

• M. Fernanda N. N. Carvalho,
• Rudolf Herrmann and
• Gabriele Wagner

Beilstein J. Org. Chem. 2017, 13, 1230–1238, doi:10.3762/bjoc.13.122

• 10 members in taxol) and lacks the oxygen substituent bearing the amino acid side group. In both compounds, we find a keto group in the largest ring. Instead of the six-membered ring annulation in taxol, there are the substituents of the original triple bonds in our compounds, precisely in the same

Nucleophilic and electrophilic cyclization of N-alkyne-substituted pyrrole derivatives: Synthesis of pyrrolopyrazinone, pyrrolotriazinone, and pyrrolooxazinone moieties

• Işıl Yenice,
• Sinan Basceken and
• Metin Balci

Beilstein J. Org. Chem. 2017, 13, 825–834, doi:10.3762/bjoc.13.83

• takes place with the terminal nitrogen atom forming a six-membered ring. Moreover, the n-butyl-substituted alkyne carbon atom undergoes a reaction to form 6-endo-dig cyclization product 12d. We assume that an allenic intermediate 17 (Figure 6) formed during the reaction is responsible for exclusive

• formation of 12d. Since the central carbon atom of an allene unit is more electropositive, the carbon atom can undergo an attack by the amide nitrogen atom to form a six-membered ring. In the case of 7a–c, the formation of allenic intermediates is out of question [15]. Based on our experimental results, we

Dimerization reactions of aryl selenophen-2-yl-substituted thiocarbonyl S-methanides as diradical processes: a computational study

• Michael L. McKee,
• Grzegorz Mlostoń,
• Katarzyna Urbaniak and
• Heinz Heimgartner

Beilstein J. Org. Chem. 2017, 13, 410–416, doi:10.3762/bjoc.13.44

• electronegative nature of Se in the five-membered ring increases the spin density on the adjacent C(2) atom. Therefore, from the perspective of spin density, the formation of the six-membered ring 13 should be preferred. With respect to the most stable conformer 12E, the free energy barrier of the reaction

• reaction leading to the intermediate delocalized diradical occurs via a transition state with very low activation energy. On the other hand, the calculated spin densities suggest the preference of the formation of the six-membered ring of the 1,4-dithiane, and this reaction course is observed in the case

A new paradigm for designing ring construction strategies for green organic synthesis: implications for the discovery of multicomponent reactions to build molecules containing a single ring

• John Andraos

Beilstein J. Org. Chem. 2016, 12, 2420–2442, doi:10.3762/bjoc.12.236

• observation about 3-partitions of a ring is that the order of the partition numbers is invariant. For example, a (3,2,1) partition of a six-membered ring framework results in an identical dissection map as a (2,3,1), (2,1,3), (1,2,3), (1,3,2), or (3,1,2) partition. Hence, for any 3-partition arranged in a

• -membered ring but contains a pivoting nucleophilic centre instead of an electrophilic one. These results may be contrasted with the analogous five-membered ring compounds cyclopentanone and pyrrolidine in Figures S4 to S7 in Supporting Information File 1. The nucleophilic–electrophilic connectivity

• , there are no documented literature examples of constructing cyclohexanone by assembly of three fragments. For comparison we also show a similar nucleophilic–electrophilic centre analysis for the synthesis of piperidine by 2- and 3-partitions in Figures S2 and S3, whose structure is also made up of a six

Elongated and substituted triazine-based tricarboxylic acid linkers for MOFs

• Arne Klinkebiel,
• Ole Beyer,
• Barbara Malawko and
• Ulrich Lüning

Beilstein J. Org. Chem. 2016, 12, 2267–2273, doi:10.3762/bjoc.12.219

• carboxylate plane relative to the central six-membered ring is in the same plane in the TATB based MOF PCN-6, the BTB analogue MOF-14 shows a tilt angle of ca. 35°. B3LYP//6-31G* calculations of the isolated linkers in the gas phase result in dihedral angles of 38.5° for BTB and 0.006° for TATB, respectively

• ” methylation [25] could find a remedy. Steric repulsion between ortho-hydrogen atoms in benzene-1,3,5-tribenzoic acid (BTB) leads to a non-planar structure (left). The exchange of CH units by nitrogen atoms in the central six-membered ring allows a planar structure: 1,3,5-triazine-2,4,6-tribenzoic acid (TATB

Synthesis of the C8’-epimeric thymine pyranosyl amino acid core of amipurimycin

• Pramod R. Markad,
• Navanath Kumbhar and
• Dilip D. Dhavale

Beilstein J. Org. Chem. 2016, 12, 1765–1771, doi:10.3762/bjoc.12.165

• spectrum of anhydrosugar 13, both the C4’ protons appeared as two doublets of doublets at δ 2.47 (J = 14.1 and 8.3 Hz) and δ 2.34 (J = 14.2 and 7.4 Hz). The vicinal coupling constants of 8.3 and 7.4 Hz between the C4’ and C5’ proton suggested distortion in the conformation of the six-membered ring of the

Rearrangements of organic peroxides and related processes

• Ivan A. Yaremenko,
• Vera A. Vil’,
• Dmitry V. Demchuk and
• Alexander O. Terent’ev

Beilstein J. Org. Chem. 2016, 12, 1647–1748, doi:10.3762/bjoc.12.162

• . The latter was isolated as the major product in the case of the six-membered ring (n = 1). In the case of the seven-membered ring (n = 2), geminal dihydroperoxide 190 and bridged bis(hydroxy)dialkyl peroxide 191 were obtained instead of 188. In case of the eight-membered ring (n = 3) an exclusive

Chiral cyclopentadienylruthenium sulfoxide catalysts for asymmetric redox bicycloisomerization

• Barry M. Trost,
• Michael C. Ryan and
• Meera Rao

Beilstein J. Org. Chem. 2016, 12, 1136–1152, doi:10.3762/bjoc.12.110

• reaction for the synthesis of Tris-protected [3.1.0] pyrrolidines, it occurred to us that protecting groups other than Tris may be equally effective for the [3.1.0] system. The Tris group was chosen during our optimization of the six-membered ring system (Table 5), which may have significantly different

Cationic Pd(II)-catalyzed C–H activation/cross-coupling reactions at room temperature: synthetic and mechanistic studies

• Takashi Nishikata,
• Alexander R. Abela,
• Shenlin Huang and
• Bruce H. Lipshutz

Beilstein J. Org. Chem. 2016, 12, 1040–1064, doi:10.3762/bjoc.12.99

• (Ph2PCH2CH2CH2PPh2)(dppp)) (angle of P–Pd–P: 90.58°) having a six-membered ring conformation [217], and palladacycles reported previously [73][206][215]. The length of the Pd–N4 bond, (2.126 Å), is slightly longer than those of Pd–N(3), Pd–C(5), Pd–O(2) bonds, likely due to a trans effect of the strong σ-donor aryl