Eschenmoser coupling reactions starting from primary thioamides. When do they work and when not?

• Lukáš Marek,
• Jiří Váňa,
• Jan Svoboda and
• Jiří Hanusek

Beilstein J. Org. Chem. 2023, 19, 808–819, doi:10.3762/bjoc.19.61

• reactions involve the imidothioate IV formed via deprotonation from nitrogen (pKaN in Scheme 2). The imidothioate IV can undergo cyclization to give an energetically favorable five-membered thiazoline ring VII which then either eliminates a leaving group Y− (when Y: alkoxy, amino) or a water molecule (when

Strategies in the synthesis of dibenzo[b,f]heteropines

• David I. H. Maier,
• Barend C. B. Bezuidenhoudt and
• Charlene Marais

Beilstein J. Org. Chem. 2023, 19, 700–718, doi:10.3762/bjoc.19.51

• -dihydrodibenzo[b,f]heteropines via intramolecular Wurtz reaction. Phenol deprotonation and intramolecular etherification in the synthesis of bauhinoxepine J. Palladium-catalysed N-arylation of dibenzo[b,f]azepine. Cu- and Ni-catalysed N-arylation. N-Alkylation of dibenzo[b,f]azepine (1a) and dihydrodibenzo[b,f

Enolates ambushed – asymmetric tandem conjugate addition and subsequent enolate trapping with conventional and less traditional electrophiles

• Péter Kisszékelyi and
• Radovan Šebesta

Beilstein J. Org. Chem. 2023, 19, 593–634, doi:10.3762/bjoc.19.44

• array of organic synthetic transformations. Enolates are usually formed by deprotonation of the corresponding organic compound. However, other synthetic approaches for their generation exist, such as cleavage of enol ethers and esters, halogen–metal exchange, transmetalations, and conjugate additions to

A new oxidatively stable ligand for the chiral functionalization of amino acids in Ni(II)–Schiff base complexes

• Alena V. Dmitrieva,
• Oleg A. Levitskiy,
• Yuri K. Grishin and
• Tatiana V. Magdesieva

Beilstein J. Org. Chem. 2023, 19, 566–574, doi:10.3762/bjoc.19.41

• (established via the α-protonation/deprotonation in the intermediate α-carbanion in the amino acid moiety) and concomitant epimerization of the final product [41]. The results of the thiolation of complex (ΔAlaNi)L7 are given in Table 1. The corresponding ʟ-cysteine derivatives (RCysNi)L7 were isolated in high

• complexes derived from various chiral ligands. The oxidation potential can be determined from the voltammetry curve measured for the quantitatively deprotonated complex. The electrochemical deprotonation using an electro-generated base is the most convenient approach [37][44]. Comparison with the Eox values

Transition-metal-catalyzed domino reactions of strained bicyclic alkenes

• Austin Pounder,
• Eric Neufeld,
• Peter Myler and
• William Tam

Beilstein J. Org. Chem. 2023, 19, 487–540, doi:10.3762/bjoc.19.38

• photoexcitation of the photosensitizer 43 to form 44 which can oxidize aniline 36a to give radical cation 46 (Scheme 7). Deprotonation by DBU produces the radical 40. The radical anion photosensitizer 45 can reduce Ni(I) to Ni(0), closing the first catalytic cycle. The Ni(0) complex can undergo oxidative addition

Computational studies of Brønsted acid-catalyzed transannular cycloadditions of cycloalkenone hydrazones

• Manuel Pedrón,
• Jana Sendra,
• Irene Ginés,
• Tomás Tejero,
• Jose L. Vicario and
• Pedro Merino

Beilstein J. Org. Chem. 2023, 19, 477–486, doi:10.3762/bjoc.19.37

• events in which all bonds involved in the cycloaddition are formed and broken and (ii) a second one consisting of the deprotonation of the nitrogen yielding a neutral compound and liberating the catalyst. The comparative quantitative analysis of the noncovalent interactions (NCI) [35][36] of fused

Transition-metal-catalyzed C–H bond activation as a sustainable strategy for the synthesis of fluorinated molecules: an overview

• Louis Monsigny,
• Floriane Doche and
• Tatiana Besset

Beilstein J. Org. Chem. 2023, 19, 448–473, doi:10.3762/bjoc.19.35

• C(sp2)–H bond activation involving a concerted metalation–deprotonation pathway affords the metallacycle K. After an oxidative addition in the N-SCF3 bond of the Munavalli reagent V, the palladium(IV) species L is obtained. Finally, the reductive elimination affords the product and regenerates the

• isolated in 70% yield. Mechanistic studies indicated that the C–H bond activation event was the rate-limiting step and the authors suggested a similar mechanism to the one depicted in Scheme 20: formation of a palladacycle thanks to a concerted metalation deprotonation (CMD) process followed by oxidation

Mechanochemical solid state synthesis of copper(I)/NHC complexes with K₃PO₄

• Ina Remy-Speckmann,
• Birte M. Zimmermann,
• Mahadeb Gorai,
• Martin Lerch and
• Johannes F. Teichert

Beilstein J. Org. Chem. 2023, 19, 440–447, doi:10.3762/bjoc.19.34

• , entry 10). Instead of small amounts of liquid, here, deprotonation leads to the formation of dihydrogen. Hence, another gastight mill was utilized for this approach. Unfortunately, a successful synthesis of 5 directly from 3 was not possible under these conditions: NMR analysis of the resulting mixture

Asymmetric synthesis of a stereopentade fragment toward latrunculins

• Benjamin Joyeux,
• Antoine Gamet,
• Nicolas Casaretto and
• Bastien Nay

Beilstein J. Org. Chem. 2023, 19, 428–433, doi:10.3762/bjoc.19.32

• PMB group in 72% yield (18), after deprotonation with NaH and reaction with PMBBr. The ester moiety of 18 was then chemoselectively reduced into alcohol 19 in 90% yield, in presence of LiBH4 to avoid the reduction of the thiazolidinone part. Finally, the aldehyde (8) was generated in 78% yield by

Group 13 exchange and transborylation in catalysis

• Dominic R. Willcox and
• Stephen P. Thomas

Beilstein J. Org. Chem. 2023, 19, 325–348, doi:10.3762/bjoc.19.28

• frustrated Lewis pair (FLP)-mediated C‒H functionalisation (Scheme 4a). Using computational analysis, the mechanism of the reaction was proposed to occur by borane dimer [9]2 dissociation, followed by a concerted deprotonation of the heterocycle 10 to give a zwitterionic intermediate 11. The zwitterion then

• fastest during catalyst activation, rather than during catalysis, leading to an in-depth investigation of catalyst activation using variable time normalisation analysis (VTNA) and kinetic isotope effects. A catalytic cycle was proposed in which (Me2N)C6H4AlH2 83 underwent deprotonation of the alkyne 1 to

• benzyl fluorides and the proposed mechanism. Borane-catalysed S‒H borylation of thiols and the proposed mechanism. Borane-catalysed hydroalumination of alkenes and allenes. a) Aluminium-catalysed hydroboration of alkynes and example catalysts. b) Deprotonation mechanistic proposal. c) Hydroalumination

Strategies to access the [5-8] bicyclic core encountered in the sesquiterpene, diterpene and sesterterpene series

• Cécile Alleman,
• Charlène Gadais,
• Laurent Legentil and
• François-Hugues Porée

Beilstein J. Org. Chem. 2023, 19, 245–281, doi:10.3762/bjoc.19.23

• (177), albolic acid (178), and ceroplastol II (179) (Scheme 37). For the synthesis of hypoestin A (177), the side chain was introduced by selective deprotonation of 184, addition of acetaldehyde, dehydration and conjugated addition of Me2CuLi. These three last steps provided the desired product 177 in

• 50% overall yield. For the synthesis of albolic acid (178) and ceroplastol II (179), the side chain was introduced by deprotonation and addition of the corresponding aldehyde. After dehydration of the subsequent alcohol and conjugated addition of Me2CuLi, the regioselective reductive opening of

Germacrene B – a central intermediate in sesquiterpene biosynthesis

• Houchao Xu and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2023, 19, 186–203, doi:10.3762/bjoc.19.18

• is terminated by deprotonation to yield a terpene hydrocarbon or by nucleophilic attack of water to generate a terpene alcohol. For the precursor of sesquiterpenes FPP six initial cyclisation modes are possible (Scheme 1). After ionisation to A either a 1,10-cyclisation to the (E,E)-germacradienyl

• combined computational and experimental approach that in this enzyme the main chain carbonyl oxygen of Gly182 near the helix G kink and an active site water are involved in the deprotonation–reprotonation sequence in the biosynthesis of 10 (Scheme 8B) [69]. γ-Selinene (10) has been synthesised from ketone

• that 11 can bind to the main protease Mpro of the SARS-CoV-2 virus that is involved in viral reproduction, but experimental tests supporting this finding are lacking [89]. Selina-5,7(11)-diene (20) can arise from I1 through 1,2-hydride shift to I1a and deprotonation (Scheme 7). This compound was first

Sequential hydrozirconation/Pd-catalyzed cross coupling of acyl chlorides towards conjugated (2E,4E)-dienones

• Benedikt Kolb,
• Daniela Silva dos Santos,
• Sanja Krause,
• Anna Zens and
• Sabine Laschat

Beilstein J. Org. Chem. 2023, 19, 176–185, doi:10.3762/bjoc.19.17

• -butyllithium and 5 equiv of alkyl iodide led to isolation of the alkyl-substituted compounds 25g–j with up to 54% yield. The reaction of 29a and 29f with TBAF·H2O gave bromoenynes 25m in 13% and 25n in 52% yield. Deprotonation of 25a and 25f with n-butyllithium and reaction with ethyl chloroformate yielded 25k

Revisiting the bromination of 3β-hydroxycholest-5-ene with CBr₄/PPh₃ and the subsequent azidolysis of the resulting bromide, disparity in stereochemical behavior

• Christian Schumacher,
• Jas S. Ward,
• Kari Rissanen,
• Carsten Bolm and
• Mohamed Ramadan El Sayed Aly

Beilstein J. Org. Chem. 2023, 19, 91–99, doi:10.3762/bjoc.19.9

• C3 hydroxy of 1 is activated. Deprotonation of 10 at C2 with bromide as base provides diene 9 as the minor product. Bromide 4 is formed via cyclopropyl cation 11, which is generated from 10 by loss of triphenylphosphine oxide being supported by involvement of the Δ5 π-bond electrons from the α-face

Catalytic aza-Nazarov cyclization reactions to access α-methylene-γ-lactam heterocycles

• Bilge Banu Yagci,
• Selin Ezgi Donmez,
• Onur Şahin and
• Yunus Emre Türkmen

Beilstein J. Org. Chem. 2023, 19, 66–77, doi:10.3762/bjoc.19.6

• starting from the commercially available triethyl phosphonoacetate (14, Scheme 2a). The deprotonation of 14 with NaH followed by alkylation using (iodomethyl)trimethylsilane afforded phosphonate 15 in 60% yield (7.0 g). Its subsequent Horner–Wadsworth–Emmons reaction with isovaleraldehyde resulted in the

Synthetic study toward tridachiapyrone B

• Morgan Cormier,
• Florian Hernvann and
• Michaël De Paolis

Beilstein J. Org. Chem. 2022, 18, 1741–1748, doi:10.3762/bjoc.18.183

• deprotonation of 2-(α’-methoxy-γ-pyrone)-1,3-dithiane. The resulting vinylogous enolate intermediate was trapped with the electrophile 3, amounting to the one-pot preparation of compound 4, having a masked carbonyl function connecting both key fragments [27][28]. Isolated and characterized by Schmitz [17], the

Total synthesis of grayanane natural products

• Nicolas Fay,
• Rémi Blieck,
• Cyrille Kouklovsky and
• Aurélien de la Torre

Beilstein J. Org. Chem. 2022, 18, 1707–1719, doi:10.3762/bjoc.18.181

• substituted cyclohexanone 9, corresponding to the future C ring [24]. After deprotonation, the C3 position was stereoselectively alkylated using propargyl bromide, and the benzyl protecting group was cleaved with FeCl3, leading to spontaneous lactone closure. A Luche reduction stereoselectively converted

• secondary alcohol was oxidized by DMP, the tertiary alcohol was triflated, 4-phenylpyridine was added and the mixture was heated at 80 °C for 14 h. The intermediate carbocation was trapped by the terminal olefin, generating a dienone 51 after deprotonation at the relatively acidic position C2. A singlet

• oxygen ene reaction involving the electron-rich olefin allowed the formation of an aldehyde, which was directly cleaved by an iridium-catalyzed deformylation, affording 52 in one-pot [36]. Deprotonation with KHMDS allowed the formation of an electron-rich diene which could again react with singlet oxygen

Redox-active molecules as organocatalysts for selective oxidative transformations – an unperceived organocatalysis field

• Elena R. Lopat’eva,
• Igor B. Krylov,
• Dmitry A. Lapshin and
• Alexander O. Terent’ev

Beilstein J. Org. Chem. 2022, 18, 1672–1695, doi:10.3762/bjoc.18.179

• coupling, or deprotonation followed by the functionalization of α- and β-positions of the starting aldehyde. NHC-catalyzed photochemical processes [64] and oxidative cyclizations with heterocycle formation [65] were reviewed previously. Acidic molecules or hydrogen-bond donors are used as organocatalysts

• via a SET mechanism. The first electron transfer occurs from the aromatic system to the organocatalyst cation radical. After the deprotonation of the benzylic position a benzylic radical is formed. Then, a benzylic cation is produced by a second oxidative electron transfer followed by nucleophile

• high hydrogen binding energy and low deprotonation free energy. N-Ammonium ylides were used for the electrochemical oxidation of unactivated C–H bonds (Scheme 37). Ylides showed good selectivity and an unusual reactivity pattern in comparison with known mediators for CH-oxidation. For example, a

Synthesis of (−)-halichonic acid and (−)-halichonic acid B

• Keith P. Reber and
• Emma L. Niner

Beilstein J. Org. Chem. 2022, 18, 1629–1635, doi:10.3762/bjoc.18.174

• envisioned for this carbocation (e.g., a nucleophilic attack of formic acid to give a formate ester), only alkene formation was observed in this system. Interestingly, the deprotonation step is completely regioselective, giving the more highly substituted endocyclic trisubstituted alkene found in 8 as

• opposed to the isomeric exocyclic 1,1-disubstituted alkene [7][8]. Alternative mechanistic pathways involving (1) deprotonation to form a bridgehead alkene, or (2) intramolecular nucleophilic attack of the ethyl ester to form a lactone are not possible in this system due to the rigid geometric constraints

Functionalization of imidazole N-oxide: a recent discovery in organic transformations

• Koustav Singha,
• Imran Habib and
• Mossaraf Hossain

Beilstein J. Org. Chem. 2022, 18, 1575–1588, doi:10.3762/bjoc.18.168

• salts 41. The latter underwent deprotonation in the presence of triethylamine in pyridine to generate the carbene intermediates 42 (Scheme 9). After that, the optically active imidazole-2-thiones 43 were obtained through the reaction with elemental sulfur. In CHCl3 solutions, the study of the optical

Simple synthesis of multi-halogenated alkenes from 2-bromo-2-chloro-1,1,1-trifluoroethane (halothane)

• Yukiko Karuo,
• Atsushi Tarui,
• Kazuyuki Sato,
• Kentaro Kawai and
• Masaaki Omote

Beilstein J. Org. Chem. 2022, 18, 1567–1574, doi:10.3762/bjoc.18.167

• highly halogenated carbon centers, which enable halothane to participate in various reactions such as homolysis of carbon–halogen bonds and deprotonation. Multi-fluorinated compounds such as HCFC-133a (CF3CH2Cl) and HFC-134a (CF3CH2F) have been widely used in reactions with a variety of nucleophiles to

• for obtaining 1. The desired highly halogenated aryl alkenyl ether 2a was obtained, but the yield was unacceptably low (Table 1, entry 1). The low conversion is attributed to use of an insufficient amount of KOH, which was used as a base for deprotonation of the phenolic hydroxy group and acidic C–H

• bond between the bromine and chlorine atoms in 1. Extra KOH was added to improve deprotonation, but the yield of 2a was still low (Table 1, entries 2 and 3). Changing the solvent from THF to DME and increasing the temperature to 80 °C slightly improved the yield of 2a to 19% (Table 1, entry 4

A facile approach to spiro[dihydrofuran-2,3'-oxindoles] via formal [4 + 1] annulation reaction of fused 1H-pyrrole-2,3-diones with diazooxindoles

• Pavel A. Topanov,
• Anna A. Maslivets,
• Maksim V. Dmitriev,
• Irina V. Mashevskaya,
• Yurii V. Shklyaev and
• Andrey N. Maslivets

Beilstein J. Org. Chem. 2022, 18, 1532–1538, doi:10.3762/bjoc.18.162

• the presence of 1.1 equiv of TEA. In this case, the base-promoted deprotonation of 3-bromooxindole (4) affords a highly nucleophilic intermediate, which undergoes Michael addition to FPD 1i, followed by intramolecular SN2 attack [39][40][41][42][43] by the oxygen of the aroyl group (Scheme 5) to give

Characterization of a new fusicoccane-type diterpene synthase and an associated P450 enzyme

• Jia-Hua Huang,
• Jian-Ming Lv,
• Liang-Yan Xiao,
• Qian Xu,
• Fu-Long Lin,
• Gao-Qian Wang,
• Guo-Dong Chen,
• Sheng-Ying Qin,
• Dan Hu and
• Hao Gao

Beilstein J. Org. Chem. 2022, 18, 1396–1402, doi:10.3762/bjoc.18.144

• employs an intramolecular proton transfer. We recently showed that a water-mediated concerted deprotonation–protonation is required for the MgMS-mediated cyclization [20]. In order to probe the mechanism underlying the cyclization of 1, we used His6-tagged TadA to carry out in vitro enzymatic reactions

• and TadA use protonation-induced C2,6 cyclization, TadA likely adopts a more asynchronous process to give a neutral intermediate 3 first followed by protonation to form 1, which is different from the highly concerted deprotonation–protonation process employed by MgMS (Scheme 1B). Further isotope

Preparation of an advanced intermediate for the synthesis of leustroducsins and phoslactomycins by heterocycloaddition

• Anaïs Rousseau,
• Guillaume Vincent and
• Cyrille Kouklovsky

Beilstein J. Org. Chem. 2022, 18, 1385–1395, doi:10.3762/bjoc.18.143

• (Scheme 6); iodination with NIS, as previously described [29], gave lower yields. We first attempted the coupling with the terminal alkyne 19, anticipating the possibility of reducing the triple bond after coupling reaction. In agreement with literature precedents, we chose LiHMDS for deprotonation of 19

Synthesis of C6-modified mannose 1-phosphates and evaluation of derived sugar nucleotides against GDP-mannose dehydrogenase

• Sanaz Ahmadipour,
• Alice J. C. Wahart,
• Jonathan P. Dolan,
• Laura Beswick,
• Chris S. Hawes,
• Robert A. Field and
• Gavin J. Miller

Beilstein J. Org. Chem. 2022, 18, 1379–1384, doi:10.3762/bjoc.18.142

• completed a selective anomeric deacetylation on a gram-scale using ammonium acetate in DMF, to afford hemi-acetal 15 in good yield (80%) [11]. This was followed by phosphorylation of the anomeric position using diphenylphosphoryl chloride as the phosphorous electrophile, following deprotonation of 15 using