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Search for "X-ray diffraction" in Full Text gives 543 result(s) in Beilstein Journal of Organic Chemistry. Showing first 200.

Tri(n-butyl)phosphine-promoted domino reaction for the efficient construction of spiro[cyclohexane-1,3'-indolines] and spiro[indoline-3,2'-furan-3',3''-indolines]

  • Hui Zheng,
  • Ying Han,
  • Jing Sun and
  • Chao-Guo Yan

Beilstein J. Org. Chem. 2022, 18, 669–679, doi:10.3762/bjoc.18.68

Graphical Abstract
  • major isomers 3l (Figure 1), 3s (Figure 2), and 3f’ (Figure 3) were determined by X-ray diffraction analysis. As can be seen from Figure 1 and Figure 2, the aryl group exists in the trans-position of the carbonyl group of the oxindole scaffold in the newly formed cyclohexyl ring. On the other hand, the
  • compound 8a (Figure 5) was determined by X-ray diffraction analysis. From Figure 5, it can be seen that the two oxindole moieties exist on the trans-configuration. Therefore, this reaction showed very high diastereoselectivity. To explain the formation of the dispiro compounds 8, a plausible reaction
  • are summarized in Table 3. Because there are three chiral carbon atoms in the molecule, several diastereoisomers can be formed in the reaction. The spiro[cyclohexane-1,3'-indolines] 5a–e were obtained in moderate to good yields. The single crystal structure of compound 5a was determined by X-ray
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Published 14 Jun 2022

A study of the photochemical behavior of terarylenes containing allomaltol and pyrazole fragments

  • Constantine V. Milyutin,
  • Andrey N. Komogortsev,
  • Boris V. Lichitsky and
  • Valeriya G. Melekhina

Beilstein J. Org. Chem. 2022, 18, 588–596, doi:10.3762/bjoc.18.61

Graphical Abstract
  • established by X-ray diffraction. Keywords: allomaltol; ESIPT process; photochemistry; pyrazoles; terarylenes; Introduction The investigation of the photochemical behavior of organic products is a significant part of modern materials science and technology. The UV-induced processes are extensively employed
  • corresponding quinoxalines 15a–l in good yields (Scheme 5). The structure of 15a was confirmed by single-crystal X-ray diffraction (Figure 2) as a representative example. It should be noted that X-ray analysis of the final quinoxaline unambiguously proves the conversion of the allomaltol fragment into the
  • good yields (Scheme 6). The structure of 15m was confirmed by single-crystal X-ray diffraction (Figure 3). It should be mentioned that other options for trapping of photogenerated unstable α-hydroxy-1,2-diketones are also possible. For example, reduction via NaBH3CN can be used as an alternative
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Published 27 May 2022

Unusual highly diastereoselective Rh(II)-catalyzed dimerization of 3-diazo-2-arylidenesuccinimides provides access to a new dibenzazulene scaffold

  • Anastasia Vepreva,
  • Alexander S. Bunev,
  • Andrey Yu. Kudinov,
  • Grigory Kantin,
  • Mikhail Krasavin and
  • Dmitry Dar’in

Beilstein J. Org. Chem. 2022, 18, 533–538, doi:10.3762/bjoc.18.55

Graphical Abstract
  • Resonance, the Center for Chemical Analysis and Materials Research and the Center for X-ray Diffraction Methods of Saint Petersburg State University Research Park for obtaining the analytical data. Funding This research was supported by the Russian Science Foundation (project grant 20-13-00024).
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Published 11 May 2022

Tosylhydrazine-promoted self-conjugate reduction–Michael/aldol reaction of 3-phenacylideneoxindoles towards dispirocyclopentanebisoxindole derivatives

  • Sayan Pramanik and
  • Chhanda Mukhopadhyay

Beilstein J. Org. Chem. 2022, 18, 469–478, doi:10.3762/bjoc.18.49

Graphical Abstract
  • each product, but the single crystal X-ray diffraction analysis confirmed the diastereoselectivity of 3. A single crystal of 3g was successfully obtained by slow evaporation of the solvent with the structure unequivocally confirmed by X-ray diffraction analysis (Figure 2). The single crystal X-ray
  • diffraction analysis also revealed the presence of four chiral stereocenters with two oxindole moieties at 1,3-possition that are in trans orientation to the 2-benzoyl group and the 5-aryl group is in cis orientation (Figure 2). This observation proved that the most thermodynamically stable diastereomer was
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Published 27 Apr 2022

Four bioactive new steroids from the soft coral Lobophytum pauciflorum collected in South China Sea

  • Di Zhang,
  • Zhe Wang,
  • Xiao Han,
  • Xiao-Lei Li,
  • Zhong-Yu Lu,
  • Bei-Bei Dou,
  • Wen-Ze Zhang,
  • Xu-Li Tang,
  • Ping-Lin Li and
  • Guo-Qiang Li

Beilstein J. Org. Chem. 2022, 18, 374–380, doi:10.3762/bjoc.18.42

Graphical Abstract
  • structurally related compounds reported in the literature. The absolute configuration of 1–3 was determined by X-ray diffraction. All the compounds have assessed the cytotoxicity against HL-60, K562, and Hela cells. Compound 1 showed weak cytotoxicity against K562 cells with an IC50 value of 19.03 μM. In
  • addition, compound 1 also showed a moderate anti-inflammatory effect in zebrafish. Keywords: anti-inflammatory; cytotoxicity; Lobophytum pauciflorum; soft coral; steroids; X-ray diffraction; Introduction The unique and complicated marine environment makes soft corals a treasure-house of secondary
  • NOESY correlations of H3-18 with H3-21 suggested the E geometry of Δ17(20). Finally, the absolute configuration of compound 1 was established by single-crystal X-ray diffraction analysis (Figure 4) carried out using Cu Kα radiation with a Flack parameter of 0.0(2). Compound 2, was isolated as a white
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Published 08 Apr 2022

Unexpected chiral vicinal tetrasubstituted diamines via borylcopper-mediated homocoupling of isatin imines

  • Marco Manenti,
  • Leonardo Lo Presti,
  • Giorgio Molteni and
  • Alessandra Silvani

Beilstein J. Org. Chem. 2022, 18, 303–308, doi:10.3762/bjoc.18.34

Graphical Abstract
  • diastereoselectivity of the reaction (see Supporting Information File 1). All stereochemical implications were fully confirmed by single-crystal X-ray diffraction analysis, which was performed on well-formed prismatic crystals of compound 2a (Figure 1) [28]. Compound 2a is chiral and crystallizes in the orthorhombic
  • determined by single-crystal X-ray diffraction analysis. Conclusion In summary, we have disclosed a reaction protocol that allows efficient homocoupling of oxindole-based N-tert-butanesulfinyl imines and generation of chiral, quaternary 1,2-diamines in a mild and completely stereoselective way. The one-pot
  • products we disclosed the efficient homocoupling of oxindole-based N-tert-butanesulfinyl imines, with the generation of chiral, quaternary 1,2-diamines in a mild and completely stereoselective way. The obtained 3,3′-bisoxindole derivatives were fully characterized by NMR and single-crystal X-ray
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Published 10 Mar 2022

Multi-faceted reactivity of N-fluorobenzenesulfonimide (NFSI) under mechanochemical conditions: fluorination, fluorodemethylation, sulfonylation, and amidation reactions

  • José G. Hernández,
  • Karen J. Ardila-Fierro,
  • Dajana Barišić and
  • Hervé Geneste

Beilstein J. Org. Chem. 2022, 18, 182–189, doi:10.3762/bjoc.18.20

Graphical Abstract
  • '' “remain[ed] obscure” [28]. In our case, we anticipated that formation of 2c'' could be accompanied by concomitant formation of (PhSO2)2NH and (PhSO2)2NCH3 derived from NFSI and 1c. For the analysis of the reaction mixture we selected powder X-ray diffraction (PXRD), a rapid analytical technique that has
  • %; (SO2Ph)2NCH3 yield = 82%. (b) Powder X-ray diffraction (PXRD) patterns measured for the reactants and simulated PXRD patterns for the published (SO2Ph)2NCH3 (CCDC ZAJBIZ) and (SO2Ph)2NH (CCDC BSULFA). (c) 1H NMR analysis of the reaction mixture of the milling of 1c and NFSI (2.0 equiv) at 30 Hz for 3 h
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Published 07 Feb 2022

Ready access to 7,8-dihydroindolo[2,3-d][1]benzazepine-6(5H)-one scaffold and analogues via early-stage Fischer ring-closure reaction

  • Irina Kuznetcova,
  • Felix Bacher,
  • Daniel Vegh,
  • Hsiang-Yu Chuang and
  • Vladimir B. Arion

Beilstein J. Org. Chem. 2022, 18, 143–151, doi:10.3762/bjoc.18.15

Graphical Abstract
  • , characterization data and 1H and 13C NMR spectra of compounds, NMR numbering schemes and X-ray crystallography data. Acknowledgements We also thank Mr. Alexander Roller and Ms. Natalie Gajic for collection of X-ray diffraction data. Funding Support from the Austrian Science Fund (FWF) (P31293-N37) and Slovak
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Published 26 Jan 2022

Green synthesis of C5–C6-unsubstituted 1,4-DHP scaffolds using an efficient Ni–chitosan nanocatalyst under ultrasonic conditions

  • Soumyadip Basu,
  • Sauvik Chatterjee,
  • Suman Ray,
  • Suvendu Maity,
  • Prasanta Ghosh,
  • Asim Bhaumik and
  • Chhanda Mukhopadhyay

Beilstein J. Org. Chem. 2022, 18, 133–142, doi:10.3762/bjoc.18.14

Graphical Abstract
  • characterized by powder Fourier-transform infrared (FTIR) spectroscopy, X-ray diffraction (XRD) analysis, scanning electron microscopy (SEM), high-resolution transmission electron microscopy (HRTEM), energy-dispersive X-ray (EDX) spectroscopy, etc. It was effectively utilized in the eco-friendly synthesis of
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Published 25 Jan 2022

Regioselective synthesis of methyl 5-(N-Boc-cycloaminyl)-1,2-oxazole-4-carboxylates as new amino acid-like building blocks

  • Jolita Bruzgulienė,
  • Greta Račkauskienė,
  • Aurimas Bieliauskas,
  • Vaida Milišiūnaitė,
  • Miglė Dagilienė,
  • Gita Matulevičiūtė,
  • Vytas Martynaitis,
  • Sonata Krikštolaitytė,
  • Frank A. Sløk and
  • Algirdas Šačkus

Beilstein J. Org. Chem. 2022, 18, 102–109, doi:10.3762/bjoc.18.11

Graphical Abstract
  • analysis, 1H, 13C, and 15N NMR spectroscopy, HRMS, and single-crystal X-ray diffraction data. Keywords: β-enamino ketoesters; heterocyclic amino acids; 15N-labeled 1,2-oxazole; NMR (1H; 13C; 15N); 1,2-oxazole (isoxazole); X-ray structure analysis; Introduction 1,2-Oxazoles (isoxazoles) constitute an
  • and 4g with trifluoroacetic acid. Removal of the Boc protection in the presence of CF3COOH in dichloromethane yielded trifluoroacetates 6a and 6b as white solids (Scheme 4). A single crystal of 6b was prepared via recrystallization from dichloromethane for X-ray diffraction analysis [48]. The
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Published 12 Jan 2022

Efficient and regioselective synthesis of dihydroxy-substituted 2-aminocyclooctane-1-carboxylic acid and its bicyclic derivatives

  • İlknur Polat,
  • Selçuk Eşsiz,
  • Uğur Bozkaya and
  • Emine Salamci

Beilstein J. Org. Chem. 2022, 18, 77–85, doi:10.3762/bjoc.18.7

Graphical Abstract
  • -oxabicyclo[5.2.1]decan-10-yl)carbamate was confirmed by X-ray diffraction. Keywords: aminocyclitol; azidolysis; bicyclic β-lactam; bicyclic lactone; cyclic β-amino acids; DFT; Introduction Cyclic β-amino acids have for the past few decades aroused widespread synthetic interest owing to their diverse
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Published 06 Jan 2022

Bifunctional thiourea-catalyzed asymmetric [3 + 2] annulation reactions of 2-isothiocyanato-1-indanones with barbiturate-based olefins

  • Jiang-Song Zhai and
  • Da-Ming Du

Beilstein J. Org. Chem. 2022, 18, 25–36, doi:10.3762/bjoc.18.3

Graphical Abstract
  • solubility of this substrate. The absolute configuration of the chiral product 3ae was unambiguously identified on the basis of single-crystal X-ray diffraction analysis as (2S,3'S) (Figure 4) [33]. The configurations of the other products were assigned by analogy to 3ae. In order to further prove the
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Published 04 Jan 2022

Synthesis of a novel aminobenzene-containing hemicucurbituril and its fluorescence spectral properties with ions

  • Qingkai Zeng,
  • Qiumeng Long,
  • Jihong Lu,
  • Li Wang,
  • Yuting You,
  • Xiaoting Yuan,
  • Qianjun Zhang,
  • Qingmei Ge,
  • Hang Cong and
  • Mao Liu

Beilstein J. Org. Chem. 2021, 17, 2840–2847, doi:10.3762/bjoc.17.195

Graphical Abstract
  • X-ray diffraction analysis. As shown in Figure 1, the nitrobenzene-containing hemicucurbituril 9 adopted a square-cavity conformation. Notably, three nitrobenzene units shared nearly a plane. It should be highlighted that macrocycle 9 gave concise proton and carbon signals in the 1H and 13C NMR
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Published 06 Dec 2021

Host–guest interaction and properties of cucurbit[8]uril with chloramphenicol

  • Lin Zhang,
  • Jun Zheng,
  • Guangyan Luo,
  • Xiaoyue Li,
  • Yunqian Zhang,
  • Zhu Tao and
  • Qianjun Zhang

Beilstein J. Org. Chem. 2021, 17, 2832–2839, doi:10.3762/bjoc.17.194

Graphical Abstract
  • (CPE) was investigated using single-crystal X-ray diffraction spectroscopy, isothermal titration calorimetry (ITC) and UV–vis, NMR and IR spectroscopy. The effects of Q[8] on the stability, in vitro release performance and antibacterial activity of CPE were also studied. The results showed that CPE and
  • ] and CPE was studied using single-crystal X-ray diffraction, UV–vis and 1H NMR spectroscopy, and the effects of Q[8] on the stability, in vitro release rate and antibacterial activity of CPE were investigated. Results and Discussion The host–guest interaction between Q[8] and CPE Single-crystal
  • . Conclusion Herein, the 1:1 host–guest complex of CPE and Q[8] was confirmed using single-crystal X-ray diffraction and 1H NMR, UV–vis and IR spectroscopy. The CPE molecule completely enters the cavity of Q[8] with an inclusion constant of 5.474 × 105 L/mol. The intervention of Q[8] has no effect on the
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Published 03 Dec 2021

Selective sulfonylation and isonitrilation of para-quinone methides employing TosMIC as a source of sulfonyl group or isonitrile group

  • Chuanhua Qu,
  • Run Huang,
  • Yong Li,
  • Tong Liu,
  • Yuan Chen and
  • Guiting Song

Beilstein J. Org. Chem. 2021, 17, 2822–2831, doi:10.3762/bjoc.17.193

Graphical Abstract
  • 3e was chosen as a representative compound and its structure was clearly verified by single crystal X-ray diffraction analysis, as shown in Figure 2 (CCDC No. 2104242). Next, the substrate scope of the 1,6-conjugate reaction of TosMIC to p-QMs was examined under optimized conditions (Table 1, entry
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Published 02 Dec 2021

Biological properties and conformational studies of amphiphilic Pd(II) and Ni(II) complexes bearing functionalized aroylaminocarbo-N-thioylpyrrolinate units

  • Samet Poyraz,
  • Samet Belveren,
  • Sabriye Aydınoğlu,
  • Mahmut Ulger,
  • Abel de Cózar,
  • Maria de Gracia Retamosa,
  • Jose M. Sansano and
  • H. Ali Döndaş

Beilstein J. Org. Chem. 2021, 17, 2812–2821, doi:10.3762/bjoc.17.192

Graphical Abstract
  • the cis-configuration determined according to X-ray diffraction patterns observed in precedent works [15][16]. Although a structural motif of the metallosurfactants is having a long alkyl chain (hydrophobic part), in these cases, L1–L3 possessed four hydrophobic domains, which are responsible of the
  • causing of the selective formation of the cis- versus the trans-aggregate observed after X-ray diffraction analysis, but calculations did not give any clear interaction to confirm it. The polar solvent methanol used for the reaction and separation could favor this chemical arrangement. Ligands L1 and L3
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Published 02 Dec 2021

Photophysical, photostability, and ROS generation properties of new trifluoromethylated quinoline-phenol Schiff bases

  • Inaiá O. Rocha,
  • Yuri G. Kappenberg,
  • Wilian C. Rosa,
  • Clarissa P. Frizzo,
  • Nilo Zanatta,
  • Marcos A. P. Martins,
  • Isadora Tisoco,
  • Bernardo A. Iglesias and
  • Helio G. Bonacorso

Beilstein J. Org. Chem. 2021, 17, 2799–2811, doi:10.3762/bjoc.17.191

Graphical Abstract
  • solution and no signal belonging to the Z isomer was observed in all cases, which can be confirmed by the chemical shift values in the 1H NMR regarding the –CH=N bond. Finally, in order to determine the real molecular structure of the Schiff bases 3, single-crystal X-ray diffraction (SC-XRD) was performed
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Published 01 Dec 2021

The PIFA-initiated oxidative cyclization of 2-(3-butenyl)quinazolin-4(3H)-ones – an efficient approach to 1-(hydroxymethyl)-2,3-dihydropyrrolo[1,2-a]quinazolin-5(1H)-ones

  • Alla I. Vaskevych,
  • Nataliia O. Savinchuk,
  • Ruslan I. Vaskevych,
  • Eduard B. Rusanov,
  • Oleksandr O. Grygorenko and
  • Mykhailo V. Vovk

Beilstein J. Org. Chem. 2021, 17, 2787–2794, doi:10.3762/bjoc.17.189

Graphical Abstract
  • product 6. The structure of products 6 was confirmed by NMR spectroscopy; in addition to that, X-ray diffraction studies were performed with single crystals of compound 6f (see Figure 2). Since the application of the obtained compounds in early drug discovery is anticipated, it is important to assess
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Published 25 Nov 2021

Solvent-free synthesis of enantioenriched β-silyl nitroalkanes under organocatalytic conditions

  • Akhil K. Dubey and
  • Raghunath Chowdhury

Beilstein J. Org. Chem. 2021, 17, 2642–2649, doi:10.3762/bjoc.17.177

Graphical Abstract
  • was found to adopt “(S)” configuration which was unambiguously established by single crystal X-ray diffraction analysis (Figure 1) [45]. To prove the scalability of this synthetic method, we examined the synthesis of 3c and ent-3d in a 1 mmol scale (Scheme 5). The products 3c and ent-3d were isolated
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Published 27 Oct 2021

Synthesis of new bile acid-fused tetrazoles using the Schmidt reaction

  • Dušan Đ. Škorić,
  • Olivera R. Klisurić,
  • Dimitar S. Jakimov,
  • Marija N. Sakač and
  • János J. Csanádi

Beilstein J. Org. Chem. 2021, 17, 2611–2620, doi:10.3762/bjoc.17.174

Graphical Abstract
  • different ketone and enone precursors from cholic acid, deoxycholic acid, and chenodeoxycholic acid was established. Newly obtained tetrazole derivatives were characterized by NMR and X-ray diffraction spectroscopy. In a number of cases, preliminary antiproliferative tests of new compounds showed strong and
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Published 20 Oct 2021

Efficient synthesis of polyfunctionalized carbazoles and pyrrolo[3,4-c]carbazoles via domino Diels–Alder reaction

  • Ren-Jie Fang,
  • Chen Yan,
  • Jing Sun,
  • Ying Han and
  • Chao-Guo Yan

Beilstein J. Org. Chem. 2021, 17, 2425–2432, doi:10.3762/bjoc.17.159

Graphical Abstract
  • crystal structure of compound 4g was determined by X-ray diffraction (Figure 4). It can be seen that the ring of pyrrolo[3,4-c]carbazole exists in a slightly twisted plane. The dihedral angles of the phenyl and the benzoyl group to the central benzene ring are 72.018° and 88.402°. To further expand the
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Published 16 Sep 2021

(Phenylamino)pyrimidine-1,2,3-triazole derivatives as analogs of imatinib: searching for novel compounds against chronic myeloid leukemia

  • Luiz Claudio Ferreira Pimentel,
  • Lucas Villas Boas Hoelz,
  • Henayle Fernandes Canzian,
  • Frederico Silva Castelo Branco,
  • Andressa Paula de Oliveira,
  • Vinicius Rangel Campos,
  • Floriano Paes Silva Júnior,
  • Rafael Ferreira Dantas,
  • Jackson Antônio Lamounier Camargos Resende,
  • Anna Claudia Cunha,
  • Nubia Boechat and
  • Mônica Macedo Bastos

Beilstein J. Org. Chem. 2021, 17, 2260–2269, doi:10.3762/bjoc.17.144

Graphical Abstract
  • NMR spectra. For structural confirmation of these new derivatives, we also carried out an X-ray diffraction study of compound 2b. Yellow single crystals suitable for X-ray diffraction analysis were obtained by slow evaporation of a solution of 2b in dichloromethane. Based on the X-ray crystallographic
  • crystallization and X-ray diffraction experiments for compound 2b were performed. All samples evaluated had low scattering patterns and germinated crystals. This resulted in poor quality data, which limited the quality of the refinement. Structure illustrations were generated using ORTEP-3 for Mercury [45], and
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Published 01 Sep 2021

Progress and challenges in the synthesis of sequence controlled polysaccharides

  • Giulio Fittolani,
  • Theodore Tyrikos-Ergas,
  • Denisa Vargová,
  • Manishkumar A. Chaube and
  • Martina Delbianco

Beilstein J. Org. Chem. 2021, 17, 1981–2025, doi:10.3762/bjoc.17.129

Graphical Abstract
  • structures, albeit with no control over the DP, could be prepared via chemoenzymatic polymerization of α-laminaribiosyl fluoride donors catalyzed by the mutated barley β(1–3)-glucanase [144][145]. Linear β(1–3)-glucans with DP of 30–40 appeared as lamellar, hexagonal crystals. Electron and X-ray diffraction
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Review
Published 05 Aug 2021

Development of N-F fluorinating agents and their fluorinations: Historical perspective

  • Teruo Umemoto,
  • Yuhao Yang and
  • Gerald B. Hammond

Beilstein J. Org. Chem. 2021, 17, 1752–1813, doi:10.3762/bjoc.17.123

Graphical Abstract
  • (C5H5NH)BF4(BF3OH), which was a 1:1 mixture of the N-fluoropyridinium salt and N-hydropyridinium salt (anion parts; BF4 and BF3OH), based on an X-ray diffraction study of a commercial sample [42]. 1-6. N-Fluoroquinuclidinium fluoride In 1986 as the N-F pyridinium reagents were emerging, Banks et al
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Published 27 Jul 2021

Free-radical cyclization approach to polyheterocycles containing pyrrole and pyridine rings

  • Ivan P. Mosiagin,
  • Olesya A. Tomashenko,
  • Dar’ya V. Spiridonova,
  • Mikhail S. Novikov,
  • Sergey P. Tunik and
  • Alexander F. Khlebnikov

Beilstein J. Org. Chem. 2021, 17, 1490–1498, doi:10.3762/bjoc.17.105

Graphical Abstract
  • reagents (Scheme 2). Luckily, 4-(2-iodophenyl)pyrrole 2 gave under these conditions target heterocyclic skeleton 3a in 50% yield (Scheme 2). Salt 3a was characterized by 1H, 13C NMR and HRMS, its structure was also confirmed by single-crystal X-ray diffraction analysis (Figure 1). Since iodo-substituted
  • . Synthesis of compounds 1, 3 and 6. Synthesis of compounds 16–18. Supporting Information Supporting Information File 210: Experimental procedures, compound characterization data, X-ray diffraction experiment, and copies of NMR spectra of new compounds. Funding We gratefully acknowledge the financial
  • support of the Russian Science Foundation project 16-13-10036. This research was carried out using resources of the Centre for Magnetic Resonance, the Research Centre for X-ray Diffraction Studies, the Centre for Chemical Analysis and Materials, and the Computer Centre of the Science Park of Saint
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Published 23 Jun 2021
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