Biosynthesis of oxygen and nitrogen-containing heterocycles in polyketides

• Franziska Hemmerling and
• Frank Hahn

Beilstein J. Org. Chem. 2016, 12, 1512–1550, doi:10.3762/bjoc.12.148

Development of chiral metal amides as highly reactive catalysts for asymmetric [3 + 2] cycloadditions

• Yasuhiro Yamashita,
• Susumu Yoshimoto,
• Mark J. Dutton and
• Shū Kobayashi

Beilstein J. Org. Chem. 2016, 12, 1447–1452, doi:10.3762/bjoc.12.140

• Schiff bases of glycine ester that proceed with low catalyst loadings (ca. 0.01 mol %). Catalytic asymmetric [3 + 2] cycloadditions of Schiff bases of α-amino esters to olefins are useful for synthesizing optically active pyrrolidine derivatives [10][11][12], and many highly stereoselective reactions

• , relatively high catalyst loadings (0.5–25 mol %) are required to achieve high yield and selectivities [15][45]. First, we investigated the catalytic asymmetric [3 + 2] cycloaddition of Schiff base 1a, prepared from glycine methyl ester and benzaldehyde, with N-phenylmaleimide (2a) in the presence of CuN

Cyclisation mechanisms in the biosynthesis of ribosomally synthesised and post-translationally modified peptides

• Andrew W. Truman

Beilstein J. Org. Chem. 2016, 12, 1250–1268, doi:10.3762/bjoc.12.120

• domain that catalyses the hydrolysis of glutamine to glutamic acid and ammonia [95]. The McjB peptidase first removes the leader peptide to expose an N-terminal amino group, which is usually a glycine residue, although other residues have been identified at this position [97][98]. McjC then catalyses

Marine-derived myxobacteria of the suborder Nannocystineae: An underexplored source of structurally intriguing and biologically active metabolites

• Antonio Dávila-Céspedes,
• Peter Hufendiek,
• Max Crüsemann,
• Till F. Schäberle and
• Gabriele M. König

Beilstein J. Org. Chem. 2016, 12, 969–984, doi:10.3762/bjoc.12.96

• expected. This hypothesis is supported by the fact that all strains investigated so far can grow within a relatively wide range of salinity. Also, the terrestrial strain M. xanthus, which is slightly halotolerant, uses organic osmolytes, i.e., glycine betaine to combat osmotic stress [16]. Analyses on the

Muraymycin nucleoside-peptide antibiotics: uridine-derived natural products as lead structures for the development of novel antibacterial agents

• Daniel Wiegmann,
• Stefan Koppermann,
• Marius Wirth,
• Giuliana Niro,
• Kristin Leyerer and
• Christian Ducho

Beilstein J. Org. Chem. 2016, 12, 769–795, doi:10.3762/bjoc.12.77

• μg/mL and 4 μg/mL. Derivatives with unnatural D-stereochemistry in the pentadecyl glycine motif possessed a similar antibacterial activity (potency within factor 2). Truncated analogues lacking the L-valine urea terminus (Cbz-protected 92d and N-terminally unprotected 92e) showed only a minor loss of

• give uridine-5'-aldehyde 99. Aldehyde 99 then supposedly undergoes an aldol addition with glycine 100 as the enol(ate) component, thus furnishing the amino acid–nucleoside hybrid 5'-C-glycyluridine (GlyU, 101). Alkylation of the 6'-amino group is then achieved by reaction with S-adenosyl methionine

• glycine (100). Hence, LipK was revealed to be a transaldolase mediating a retro-aldol reaction of L-threonine (119) towards the enol(ate) and acetaldehyde (120), followed by a stereoselective aldol addition of the former to uridine-5'-aldehyde 99 (Scheme 12). Using synthetic reference compounds, it could

Gold-catalyzed direct alkynylation of tryptophan in peptides using TIPS-EBX

• Gergely L. Tolnai,
• Jonathan P. Brand and
• Jerome Waser

Beilstein J. Org. Chem. 2016, 12, 745–749, doi:10.3762/bjoc.12.74

• reaction time. With the optimized conditions in hand, we investigated the scope of the reaction with different amino acids in the dipeptide (Scheme 2). With glycine as second amino acid, the desired product 5b could be obtained in 66% yield. The reaction was selective for tryptophan in the presence of

Strecker degradation of amino acids promoted by a camphor-derived sulfonamide

• M. Fernanda N. N. Carvalho,
• M. João Ferreira,
• Ana S. O. Knittel,
• Maria da Conceição Oliveira,
• João Costa Pessoa,
• Rudolf Herrmann and
• Gabriele Wagner

Beilstein J. Org. Chem. 2016, 12, 732–744, doi:10.3762/bjoc.12.73

• 1 (O2SNC10H13O), reacts with amino acids (glycine, L-alanine, L-phenylalanine, L-leucine) to form a compound O2SNC10H13NC10H14NSO2 (2) which was characterized by spectroscopic means (MS and NMR) and supported by DFT calculations. The product, a single diastereoisomer, contains two oxoimine units

• by spectroscopic means. Surprisingly, in 2 the only obvious trace of the amino acid is the bridging nitrogen atom, which means that the rest of the amino acid disappeared. From reactions of 1 with several amino acids (glycine, alanine, leucine, phenylalanine) always compound 2 was obtained. This

• pale yellow solid (2) that unexpectedly displays analytical and spectroscopic data (NMR, IR) independent of the amino acid (R = H, glycine; R = CH3, L-alanine; R = CH2Ph, L-phenylalanine; R = CH2CH(CH3)2, leucine). The absence of the characteristic oxoimine CO stretching band (1760 cm−1) in the IR

Bifunctional phase-transfer catalysis in the asymmetric synthesis of biologically active isoindolinones

• Antonia Di Mola,
• Maximilian Tiffner,
• Francesco Scorzelli,
• Laura Palombi,
• Rosanna Filosa,
• Paolo De Caprariis,
• Mario Waser and
• Antonio Massa

Beilstein J. Org. Chem. 2015, 11, 2591–2599, doi:10.3762/bjoc.11.279

• cascade reaction, investigating novel trans-1,2-cyclohexane diamine-based bifunctional ammonium salts 8. These catalysts were recently introduced by our groups in a variety of different reactions [27][28][29], as exemplified by a related aldol-initiated cascade reaction of glycine Schiff base with 2

Recent highlights in biosynthesis research using stable isotopes

• Jan Rinkel and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2015, 11, 2493–2508, doi:10.3762/bjoc.11.271

• , Scheme 5), a toxin from Aspergillus oryzae, provides an interesting example. Its importance arises from the use of the producing organism in Asian food industry [46]. The biosynthesis of 20 can be hypothesized from phenylalanine and glycine. To investigate this, (ring-2H5)Phe and (2-13C)Gly were fed and

• via NMR. It turned out that the label was incorporated into the N-methoxy group, and not into the presumptive glycine unit of the diketopiperazine structure. In summary, these results support an unusual conversion of one phenylalanine-derived side chain to a glycin-like moiety. The observed

• incorporation of labeled Gly into the methyl group was rationalized by glycine degradation, directing the labeling via tetrahydrofolate and SAM into aspirochlorine biosynthesis. The conversion of the Phe residue to Gly may proceed through either oxidative C–C bond cleavage or a retro-aldol reaction in 18, in

Active site diversification of P450cam with indole generates catalysts for benzylic oxidation reactions

• Paul P. Kelly,
• Anja Eichler,
• Susanne Herter,
• David C. Kranz,
• Nicholas J. Turner and
• Sabine L. Flitsch

Beilstein J. Org. Chem. 2015, 11, 1713–1720, doi:10.3762/bjoc.11.186

• chains, including that of Gly, introducing space in the upper part of the active site and substrate entrance channel. The small glycine side chain was substituted at seven different positions including former Phe, Thr, Met, Leu and Asp residues. Library II also included a Gly–Gly double substitution

Pyridinoacridine alkaloids of marine origin: NMR and MS spectral data, synthesis, biosynthesis and biological activity

• Louis P. Sandjo,
• Victor Kuete and
• Maique W. Biavatti

Beilstein J. Org. Chem. 2015, 11, 1667–1699, doi:10.3762/bjoc.11.183

• , threonine, glycine or γ-aminobutyric acid gave different types of these marine alkaloids. Previously, Gellerman demonstrated (Figure 7) that catechol (64) and kynuramine (65) could be potential precursors in the eilatin (58) (or other pyridoacridines) biosynthesis [75]. The feeding experiments with labelled

Orthogonal dual-modification of proteins for the engineering of multivalent protein scaffolds

• Michaela Mühlberg,
• Michael G. Hoesl,
• Christian Kuehne,
• Jens Dernedde,
• Nediljko Budisa and
• Christian P. R. Hackenberger

Beilstein J. Org. Chem. 2015, 11, 784–791, doi:10.3762/bjoc.11.88

• amino acids like glycine, alanine or serine in the native process of N-terminal methionine excision (NME) [43]. This process exposes Ser2 at the N-terminus for subsequent N-terminal oxime ligation. It has to be noted that the incorporation of Aha, as known [42][44], can hamper NME and therefore delivers

Regulation of integrin and growth factor signaling in biomaterials for osteodifferentiation

• Qiang Wei,
• Theresa L. M. Pohl,
• Anja Seckinger,
• Joachim P. Spatz and
• Elisabetta A. Cavalcanti-Adam

Beilstein J. Org. Chem. 2015, 11, 773–783, doi:10.3762/bjoc.11.87

• adhesion proteins, on the other hand, bind to multiple integrin receptors (Figure 2b) [18]. A set of receptor–ligand combinations with high-affinity interaction has even been identified. The best characterized and most widely used ligand is the arginine-glycine-aspartic acid (RGD) sequence. RGD motifs are

DNA display of glycoconjugates to emulate oligomeric interactions of glycans

• Alexandre Novoa and
• Nicolas Winssinger

Beilstein J. Org. Chem. 2015, 11, 707–719, doi:10.3762/bjoc.11.81

• diverse glycans could be iteratively introduced on amino acid linkers. Inspired by Shoda’s activation [40] which provides facile access to complex glycosyl azides from native carbohydrates, we subsequently applied reiterative CuAAC conjugation of glycans on propargyl glycine residues within a peptide [41

Design, synthesis and photochemical properties of the first examples of iminosugar clusters based on fluorescent cores

• Mathieu L. Lepage,
• Antoine Mirloup,
• Manon Ripoll,
• Fabien Stauffert,
• Anne Bodlenner,
• Raymond Ziessel and
• Philippe Compain

Beilstein J. Org. Chem. 2015, 11, 659–667, doi:10.3762/bjoc.11.74

• /methanol or water/DMSO mixtures, those mixtures prevent the agregation of the pyrene core. Photophysical properties The absorption and emission features of the BODIPY-based cluster 13a and the pyrene-based cluster 15a dyes were investigated in an aqueous buffer solution of glycine (0.1 M) at pH 10.7. This

• of 24% (in aqueous glycine buffer at pH 10.7), the profile of the band mirrors the absorption with a maximum at 558 nm which is in keeping with little reorganization in the excited state and characteristic of a singlet emitter. The modest Stokes shift (Δss = 1020 cm−1) and the short excited state

• to the successive pyrene excited states, S0→S1 at 391 nm and S0→S2 at 295 nm (Figure 3b) [71]. Emission maximum was recorded at 534 nm from an excitation at 390 nm or 295 nm with a quantum of 43% (in aqueous glycine buffer at pH 10.7). Unlike the BODIPY homologue, the pyrene-based cluster 15a has a

A simple and efficient method for the preparation of 5-hydroxy-3-acyltetramic acids

• Johanna Trenner and
• Evgeny V. Prusov

Beilstein J. Org. Chem. 2015, 11, 323–327, doi:10.3762/bjoc.11.37

• ] variant of Lacey–Dieckmann [8] condensation (Scheme 1) [9][10]. Reaction of either β-ketoester 4 or Meldrum’s acid derivative 9 with suitably protected glycine esters (5,6,10), followed by base-induced condensation furnished the desired tetramic acid model compounds as crystalline solids after treatment

Natural phenolic metabolites with anti-angiogenic properties – a review from the chemical point of view

• Qiu Sun,
• Jörg Heilmann and
• Burkhard König

Beilstein J. Org. Chem. 2015, 11, 249–264, doi:10.3762/bjoc.11.28

• xanthohumol intake [77]. To date, xanthohumol in vivo metabolites have not been investigated regarding their anti-angiogenic activity. Genistein Genistein (60) is an isoflavone extracted from soybeans (Glycine max (L.) MERR, Fabaceae). It is present as the 7-O-glycoside genistein in the plant; however, during

NAA-modified DNA oligonucleotides with zwitterionic backbones: stereoselective synthesis of A–T phosphoramidite building blocks

• Boris Schmidtgall,
• Claudia Höbartner and
• Christian Ducho

Beilstein J. Org. Chem. 2015, 11, 50–60, doi:10.3762/bjoc.11.8

• reactions with glycine-derived phosphonate 12 and to compare both possible routes towards 9, i.e., with or without thymine protection (Scheme 1). For the synthesis of the N-Fmoc-protected thymidine-derived nucleosyl amino acids (S)-9 and (R)-9, 3',5'-bis-O-silylated thymidine 13 (which can be readily

• stability, thymidine-5'-aldehydes 10 and 11 were not stored, but directly used for the subsequent Wittig–Horner reaction. They were therefore converted with glycine-derived phosphonate 12 [51][52][53][54] in the presence of potassium tert-butoxide as a base. As anticipated [47][48][55], these reactions

The Shono-type electroorganic oxidation of unfunctionalised amides. Carbon–carbon bond formation via electrogenerated N-acyliminium ions

• Alan M. Jones and
• Craig E. Banks

Beilstein J. Org. Chem. 2014, 10, 3056–3072, doi:10.3762/bjoc.10.323

• glycine cation equivalents. Steckhan and co-workers have previously demonstrated the power of electrosynthetic chiral glycine equivalents [99][100]. Combination of technology and natural product analogue synthesis Lastly, Ley and co-workers have recently reported the expedient synthesis of indole alkaloid

(2R,1'S,2'R)- and (2S,1'S,2'R)-3-[2-Mono(di,tri)fluoromethylcyclopropyl]alanines and their incorporation into hormaomycin analogues

• Armin de Meijere,
• Sergei I. Kozhushkov,
• Dmitrii S. Yufit,
• Christian Grosse,
• Marcel Kaiser and
• Vitaly A. Raev

Beilstein J. Org. Chem. 2014, 10, 2844–2857, doi:10.3762/bjoc.10.302

• %, respectively). Upon treatment with the iodine/triphenylphosphine reagent in the presence of imidazole, the racemic trans-(2-fluoromethylcyclopropyl)methanols 25a–c were smoothly converted to the corresponding iodides 11a–c in very good yields (Scheme 3). Alkylation of the glycine equivalent enolates derived

• of Schiff bases derived from glycine and (S)- or (R)-2-N-(N'-benzylprolyl)aminobenzophenone (BPB) [30][31], aminoacetophenone (BPA) [32] or aminobenzaldehyde (BPH) [33] can be used as chiral nucleophilic glycine equivalents in reactions with alkyl halides or carbonyl compounds. The most versatile one

• is the nickel(II) aminobenzophenone derivative. It is interesting that nickel(II) complexes of Schiff bases derived from 2-bromoglycine and (S)-BPB can be used as electrophilic glycine equivalents [34]. Alkylations of the nickel(II) complexes of Schiff bases derived from glycine and (S)- or (R)-BPB

Synthesis of aromatic glycoconjugates. Building blocks for the construction of combinatorial glycopeptide libraries

• Markus Nörrlinger and
• Thomas Ziegler

Beilstein J. Org. Chem. 2014, 10, 2453–2460, doi:10.3762/bjoc.10.256

• focus was on glycosylated amino acid building blocks derived from aspartic acid and from the PNA-like N-(2-aminoethyl)glycine (AEG) backbone to which the sugar moieties were attached through either simple alkyl chains [5][6], amino alcohols [7][8] or 1,2,3-triazoles [9][10][11]. These building blocks

(CF₃CO)₂O/CF₃SO₃H-mediated synthesis of 1,3-diketones from carboxylic acids and aromatic ketones

• JungKeun Kim,
• Elvira Shokova,
• Victor Tafeenko and
• Vladimir Kovalev

Beilstein J. Org. Chem. 2014, 10, 2270–2278, doi:10.3762/bjoc.10.236

• acylation of the ketones by several functionally substituted carboxylic acids. Whereas glycine did not react with the ketones, β-alanine (1i) reacting with 1-indanone, 1-tetralone and acetophenone formed the corresponding trifluoroacylated β-aminodiketones 3u–w (reaction 1 in Scheme 2). A fuller acylation

An experimental and theoretical NMR study of NH-benzimidazoles in solution and in the solid state: proton transfer and tautomerism

• Carla I. Nieto,
• Pilar Cabildo,
• M. Ángeles García,
• Rosa M. Claramunt,
• Ibon Alkorta and
• José Elguero

Beilstein J. Org. Chem. 2014, 10, 1620–1629, doi:10.3762/bjoc.10.168

• decoupling field strength of 86.2 kHz by TPPM sequence. 13C spectra were originally referenced to a glycine sample and then the chemical shifts were recalculated to the Me4Si [for the carbonyl atom δ (glycine) = 176.1] and 15N spectra to 15NH4Cl and then converted to nitromethane scale using the relationship

Synthesis of the first examples of iminosugar clusters based on cyclopeptoid cores

• Mathieu L. Lepage,
• Alessandra Meli,
• Anne Bodlenner,
• Céline Tarnus,
• Francesco De Riccardis,
• Irene Izzo and
• Philippe Compain

Beilstein J. Org. Chem. 2014, 10, 1406–1412, doi:10.3762/bjoc.10.144

• scaffold is crucial as it defines the valency, the size and the shape of the multivalent architectures. Due to their broad chemical diversity, rapid and convenient synthetic access, improved proteolytic stability and cell permeability over peptides, N-substituted glycine oligomers, called peptoids [14][15

Asymmetric Ugi 3CR on isatin-derived ketimine: synthesis of chiral 3,3-disubstituted 3-aminooxindole derivatives

• Giordano Lesma,
• Fiorella Meneghetti,
• Alessandro Sacchetti,
• Mattia Stucchi and
• Alessandra Silvani

Beilstein J. Org. Chem. 2014, 10, 1383–1389, doi:10.3762/bjoc.10.141

• 7) resulted in a decrease of the dr. This may be caused by a minor stereofacial differentiation of the intermediate carboxylate iminium ion during the nucleophilic addition of the isocyanide. Isocyanide 2b (Table 2, entry 3 and entry 4), formally derived from glycine, afforded satisfactory results

• reaction of the glycine derivative 3f produced a complex inseparable mixture of products (Table 2, entry 11). When N-Boc-D-Pro was used as the acid component (Table 2, entry 10) a high 96:4 dr was measured despite a low yield (18%). This outcome suggests a matching/mismatching effect between the chirality