Discrete multiporphyrin pseudorotaxane assemblies from di- and tetravalent porphyrin building blocks

• Mirko Lohse,
• Larissa K. S. von Krbek,
• Sebastian Radunz,
• Suresh Moorthy,
• Christoph A. Schalley and
• Stefan Hecht

Beilstein J. Org. Chem. 2015, 11, 748–762, doi:10.3762/bjoc.11.85

• ] to life science [13][14][15][16][17] have benefited from the development of the basic concepts of molecular recognition, templation [18], self-assembly [19], or self-sorting [20][21], just to name a few. More recently, multivalent binding [22][23][24] and cooperativity [25][26] have attracted

Probing multivalency in ligand–receptor-mediated adhesion of soft, biomimetic interfaces

• Stephan Schmidt,
• Hanqing Wang,
• Daniel Pussak,
• Simone Mosca and
• Laura Hartmann

Beilstein J. Org. Chem. 2015, 11, 720–729, doi:10.3762/bjoc.11.82

• simply mediated by the high number of ligand–receptor interactions. Keywords: bio-interfaces; cell mimetic; glycocalyx; glycopolymer; molecular recognition; RICM; specific adhesion; Introduction Vast amounts of biological processes are mediated by interactions between membrane proteins and

NAA-modified DNA oligonucleotides with zwitterionic backbones: stereoselective synthesis of A–T phosphoramidite building blocks

• Boris Schmidtgall,
• Claudia Höbartner and
• Christian Ducho

Beilstein J. Org. Chem. 2015, 11, 50–60, doi:10.3762/bjoc.11.8

• Oligonucleotides are important agents for a number of biomedical applications [1]. Thus, they are employed to exert antigene [2] or antisense [3] mechanisms as well as to trigger or inhibit RNA interference [4]. The capability of sequence-specific molecular recognition is a striking feature of nucleic acids, but

Inherently chiral calix[4]arenes via oxazoline directed ortholithiation: synthesis and probe of chiral space

• Simon A. Herbert,
• Laura J. van Laeren,
• Dominic C. Castell and
• Gareth E. Arnott

Beilstein J. Org. Chem. 2014, 10, 2751–2755, doi:10.3762/bjoc.10.291

• and applications. These range from their use as molecular receptors [2][3][4][5][6], stationary phase modifiers in separation science [7][8][9], and as molecular storage vessels [10][11][12][13]. In the area of molecular recognition, the importance of chirality in the calixarene receptor has been

Loose-fit polypseudorotaxanes constructed from γ-CDs and PHEMA-PPG-PEG-PPG-PHEMA

• Tao Kong,
• Lin Ye,
• Ai-ying Zhang and
• Zeng-guo Feng

Beilstein J. Org. Chem. 2014, 10, 2461–2469, doi:10.3762/bjoc.10.257

• create the single-chain stranded, loose-fit structured PPRs. A further investigation focusing on molecular recognition between γ-CD and PHEMA is ongoing in our laboratory. Conclusion A series of γ-CD-based PPRs were prepared via the self-assembly of γ-CDs with a pentablock copolymer PHEMA-PPO-PEO-PPO

• -PHEMA in aqueous solution at room temperature. The resulting PPRs possess a unique single-chain stranded, loose-fit conformation showing no characteristic channel-type crystal structure. This finding highlights a novel model to fulfil molecular recognition between transformable γ-CDs and functional

Towards the sequence-specific multivalent molecular recognition of cyclodextrin oligomers

• Michael Kurlemann and
• Bart Jan Ravoo

Beilstein J. Org. Chem. 2014, 10, 2428–2440, doi:10.3762/bjoc.10.253

• Michael Kurlemann Bart Jan Ravoo Organic Chemistry Institute, Westfälische Wilhelms-Universität Münster, Corrensstrasse 40, 48149 Münster, Germany 10.3762/bjoc.10.253 Abstract Sequence-specific multivalent molecular recognition has been recognized to play a major role in biological processes

• realize sequence-specific molecular recognition by the use of host–guest chemistry, but the recognition motifs as well as the linkages have to be chosen very carefully. In the case of trivalent systems one adamantane moiety must be included to induce preferred formation of 1:1 adducts. Due to the too weak

• , with non-complementary strands aggregates of higher stoichiometry are generated. Keywords: cooperativity; cyclodextrins; molecular recognition; multivalency; sequence specificity; Introduction Multivalency is the interaction of a receptor and a ligand with at least two recognition motifs on each

Molecular recognition of AT-DNA sequences by the induced CD pattern of dibenzotetraaza[14]annulene (DBTAA)–adenine derivatives

• Marijana Radić Stojković,
• Marko Škugor,
• Łukasz Dudek,
• Jarosław Grolik,
• Julita Eilmes and
• Ivo Piantanida

Beilstein J. Org. Chem. 2014, 10, 2175–2185, doi:10.3762/bjoc.10.225

• in contrast to the majority of previously studied DBTAA analogues (DNA/RNA intercalators). Only DBTAA–propyladenine conjugates revealed the molecular recognition of AT-DNA by an ICD band pattern > 300 nm, whereas significant ICD bands did not appear for other ds-DNA/RNA. A structure–activity relation

• /AP3am) revealed molecular recognition of AT-DNA by the appearance of an ICD band pattern >300 nm. Significant ICD bands did not appear for other ds-DNA/RNA. A structure–activity relation for the studied series of compounds revealed that the essential structural features for the ICD recognition of AT-DNA

Why a diaminopyrrolic tripodal receptor binds mannosides in acetonitrile but not in water?

• Diogo Vila-Viçosa,
• Oscar Francesconi and
• Miguel Machuqueiro

Beilstein J. Org. Chem. 2014, 10, 1513–1523, doi:10.3762/bjoc.10.156

• over the years [1][2][3][4][5][6]. Most of these were developed for glucose since it is one of the most common sugars in living systems [7] and the preferred monosaccharide for energy storage [8]. However, mannose is essential for various biological functions, such as molecular recognition, being one

Carbohydrate PEGylation, an approach to improve pharmacological potency

• M. Eugenia Giorgi,
• Rosalía Agusti and
• Rosa M. de Lederkremer

Beilstein J. Org. Chem. 2014, 10, 1433–1444, doi:10.3762/bjoc.10.147

• recognized as immunodominant epitopes in antigenic glycoconjugates [14]. Carbohydrates participate in molecular recognition events such as host–pathogen interactions, responsible for mammal infections, and are candidates for chemotherapy [15]. Moreover, synthesis of multivalent carbohydrate ligands provide

Molecular recognition of surface-immobilized carbohydrates by a synthetic lectin

• Melanie Rauschenberg,
• Eva-Corrina Fritz,
• Christian Schulz,
• Tobias Kaufmann and
• Bart Jan Ravoo

Beilstein J. Org. Chem. 2014, 10, 1354–1364, doi:10.3762/bjoc.10.138

• Melanie Rauschenberg Eva-Corrina Fritz Christian Schulz Tobias Kaufmann Bart Jan Ravoo Organic Chemistry Institute, Westfälische Wilhelms-Universität Münster, Corrensstrasse 40, 48149 Münster, Germany 10.3762/bjoc.10.138 Abstract The molecular recognition of carbohydrates and proteins mediates a

• agglutinin. It was found that the printed carbohydrates retain their characteristic selectivity towards the synthetic and natural lectins and that the recognition of synthetic and natural lectins is strictly orthogonal. Keywords: carbohydrates; lectins; molecular recognition; microarrays; multivalent

• results obtained from the microarray support our earlier finding that the interaction of HisHis and NANA is 1:2 [39], so that HisHis is likely to bind divalently to the microarray surface. Conclusion In summary, we have investigated the molecular recognition of surface immobilized carbohydrates by a

Design and synthesis of multivalent neoglycoconjugates by click conjugations

• Feiqing Ding,
• Li Ji,
• Ronny William,
• Hua Chai and
• Xue-Wei Liu

Beilstein J. Org. Chem. 2014, 10, 1325–1332, doi:10.3762/bjoc.10.134

• and glycopeptides are the key constituents of the cellular membrane and extracellular matrix, and play a pivotal role in various key cellular events such as cell–cell recognition, host–pathogen or host–symbiont interactions, molecular recognition of antibodies and metastasis [1][2][3][4][5]. The

Tandem Cu-catalyzed ketenimine formation and intramolecular nucleophile capture: Synthesis of 1,2-dihydro-2-iminoquinolines from 1-(o-acetamidophenyl)propargyl alcohols

• Gadi Ranjith Kumar,
• Yalla Kiran Kumar,
• Ruchir Kant and
• Maddi Sridhar Reddy

Beilstein J. Org. Chem. 2014, 10, 1255–1260, doi:10.3762/bjoc.10.125

• constituents in pharmaceutical chemistry [30][31][32][33][34][35][36][37][38][39][40][41][42] and also found to play a crucial role in molecular recognition processes [43][44][45][46]. Due to its vast-spread importance, several methods have been developed to construct this useful framework. Apart from the

Synthesis of a sucrose dimer with enone tether; a study on its functionalization

• Zbigniew Pakulski,
• Norbert Gajda,
• Magdalena Jawiczuk,
• Jadwiga Frelek,
• Piotr Cmoch and
• Sławomir Jarosz

Beilstein J. Org. Chem. 2014, 10, 1246–1254, doi:10.3762/bjoc.10.124

• synthesis; sucrose; Introduction Molecular recognition is one of the most important phenomena in stereoselective processes. Chiral crown ethers (or analogs) are particularly useful in enantioselective reactions [1][2] as well as differentiation of chiral guests [3][4]. From all of the chiral platforms

Olefin cross metathesis based de novo synthesis of a partially protected L-amicetose and a fully protected L-cinerulose derivative

• Bernd Schmidt and
• Sylvia Hauke

Beilstein J. Org. Chem. 2014, 10, 1023–1031, doi:10.3762/bjoc.10.102

• ., through molecular recognition of a preferred binding site [2][3][4][5], thereby ensuring the selectivity of a chemotherapeutic agent. Particularly common are side chains composed of deoxygenated sugars [6]. For example, the kigamicins are bacterial secondary metabolites isolated from Amicolatopsis sp. [7

Addition of H-phosphonates to quinine-derived carbonyl compounds. An unexpected C9 phosphonate–phosphate rearrangement and tandem intramolecular piperidine elimination

• Łukasz Górecki,
• Artur Mucha and
• Paweł Kafarski

Beilstein J. Org. Chem. 2014, 10, 883–889, doi:10.3762/bjoc.10.85

• catalysis, transition metal complexing, molecular recognition, chromatographic separation and analysis of enantiomers [2][3][4][5]. Synthetic modifications of the basic structure, motivated by an improved stereoselectivity potential of quinine, are an issue of ongoing trials [6][7][8][9]. Surprisingly

Molecular recognition of isomeric protonated amino acid esters monitored by ESI-mass spectrometry

• Andrea Liesenfeld and
• Arne Lützen

Beilstein J. Org. Chem. 2014, 10, 825–831, doi:10.3762/bjoc.10.78

• protonated amino acid esters. Keywords: amino acids; isomer labelled guest method (ILGM); mass spectrometry; molecular recognition; 9,9’-spirobifluorenes; template; Introduction The separation of constitutionally isomeric amino acids is of practical interest. This is particularly true for leucine (Leu

• achieve amino acid recognition by an artificial host [6][7][8][9][10][11] with regard to isomer separation upon isomer-selective molecular recognition by a concave template acting as a host, thereby avoiding the necessity to establish or break additional covalent chemical bonds. Hence, we have prepared

• target compounds 1 and 2 in moderate yields (Scheme 2). Molecular recognition studies With our crown ether derivatives 1 and 2 in hands we studied their recognition behaviour towards the L-leucine isomers. Usually, spectroscopic techniques like NMR or UV–vis spectroscopy are used for this purpose

Staudinger ligation towards cyclodextrin dimers in aqueous/organic media. Synthesis, conformations and guest-encapsulation ability

• Malamatenia D. Manouilidou,
• Yannis G. Lazarou,
• Irene M. Mavridis and
• Konstantina Yannakopoulou

Beilstein J. Org. Chem. 2014, 10, 774–783, doi:10.3762/bjoc.10.73

• specific guest molecules. The oligomers are reported to display improved to significantly enhanced binding capacity as well as superior molecular recognition ability [12][13][14], compared to the natural CDs. Suitable design has resulted in better hosts for applications as sensors and catalysts [15], hosts

End-group-functionalized poly(N,N-diethylacrylamide) via free-radical chain transfer polymerization: Influence of sulfur oxidation and cyclodextrin on self-organization and cloud points in water

• Sebastian Reinelt,
• Daniel Steinke and
• Helmut Ritter

Beilstein J. Org. Chem. 2014, 10, 680–691, doi:10.3762/bjoc.10.61

• interactions in living systems [3][4]. Since then, the field of self-assembly through molecular recognition has attracted much attention also in the design of smart materials. In this context, cyclodextrins (CD) are of interest as ring shaped host molecules, e.g., for the design of stimuli-responsive hydrogels

Novel supramolecular affinity materials based on (−)-isosteviol as molecular templates

• Christina Lohoelter,
• Malte Brutschy,
• Daniel Lubczyk and
• Siegfried R. Waldvogel

Beilstein J. Org. Chem. 2013, 9, 2821–2833, doi:10.3762/bjoc.9.317

• ][6][7][8][9][10]. Particular interest was given to C3-symmetric structures, serving e.g. as templates in asymmetric catalysis or molecular recognition [11][12][13][14]. A specific but potent subclass of such C3-symmetric architectures is represented by triphenylene ketals [15]. They have found

Synthesis of enantiopure sugar-decorated six-armed triptycene derivatives

• Paola Bonaccorsi,
• Maria Luisa Di Gioia,
• Antonella Leggio,
• Lucio Minuti,
• Teresa Papalia,
• Carlo Siciliano,
• Andrea Temperini and
• Anna Barattucci

Beilstein J. Org. Chem. 2013, 9, 2410–2416, doi:10.3762/bjoc.9.278

• chemistry. Moreover, they have been investigated for their potential applications in molecular recognition, showing powerful complexation abilities toward different kinds of organic guests [3][4]. Many biological processes, such as cell–cell communication, immune response and cancer metastasis, are

• cluster effect [7][8][9][10][11]. These glycoconjugates showed their potentialities not only in the interpretation of molecular recognition events but also in biotechnological, pharmaceutical and medical fields [12]. Our research interest is focused on the synthesis of new glycoconjugates and the study of

• tool for the study of molecular recognition. Experimental General methods. All commercial reagents and solvents (AR, LabScan Ltd.; SpS, Romil Ltd.) were used without further purification. All syntheses were carried out under atmospheric conditions unless otherwise noted. Analytical TLC was performed on

Structure elucidation of β-cyclodextrin–xylazine complex by a combination of quantitative ¹H–¹H ROESY and molecular dynamics studies

• Syed Mashhood Ali,
• Kehkeshan Fatma and
• Snehal Dhokale

Beilstein J. Org. Chem. 2013, 9, 1917–1924, doi:10.3762/bjoc.9.226

• science and is the basis for most of the vital biological processes [1]. The basis of supramolecular chemistry is molecular recognition where host and guest species interact with each other and exist as a single system. These host–guest systems symbolize simplest examples of supramolecular systems in

Molecular assembly of amino acid interlinked, topologically symmetric, π-complementary donor–acceptor–donor triads

• M. B. Avinash,
• K. V. Sandeepa and
• T. Govindaraju

Beilstein J. Org. Chem. 2013, 9, 1565–1571, doi:10.3762/bjoc.9.178

• realized by modulating the chemical functionality of interlinking amino acids. Keywords: amino acids; charge transfer; designer functional molecules; molecular assembly; molecular recognition; Findings Geometric shapes, size and patterns have attracted the inquisitive human mind since time immemorial [1

• ][2]. The significance of geometric complementarity and chemical functionality can be exemplified by the well-known “lock and key” mechanism of enzymes as well as the prototypal molecular recognition manifested in biochemical processes [1][2][3][4]. It is this elementary yet elegant design strategy

• symmetric and π-complementary pyrene and NDI. Consequently, free-floating high-aspect-ratio supercoiled nanofibres and hierarchical helical bundles of triads are realized by modulating the chemical functionality of interlinking amino acids. Such molecular-recognition processes embodied in pertinent designer

The diketopiperazine-fused tetrahydro-β-carboline scaffold as a model peptidomimetic with an unusual α-turn secondary structure

• Francesco Airaghi,
• Andrea Fiorati,
• Giordano Lesma,
• Manuele Musolino,
• Alessandro Sacchetti and
• Alessandra Silvani

Beilstein J. Org. Chem. 2013, 9, 147–154, doi:10.3762/bjoc.9.17

• are structural motifs commonly found in bioactive peptides, which, besides being fundamental in protein folding, play a central role as molecular-recognition elements [31][32][33][34]. In addition to the most frequently occurring β and γ-turns, reversal of the polypeptide chain direction in globular

Self-assembled organic–inorganic magnetic hybrid adsorbent ferrite based on cyclodextrin nanoparticles

• Ângelo M. L. Denadai,
• Frederico B. De Sousa,
• Joel J. Passos,
• Fernando C. Guatimosim,
• Kirla D. Barbosa,
• Ana E. Burgos,
• Fernando Castro de Oliveira,
• Jeann C. da Silva,
• Bernardo R. A. Neves,
• Nelcy D. S. Mohallem and
• Rubén D. Sinisterra

Beilstein J. Org. Chem. 2012, 8, 1867–1876, doi:10.3762/bjoc.8.215

• (CDs) can be associated with the inorganic matrix as an interesting strategy, since these macromolecules have been used for several devices with different properties, from light-responsive matrices to molecular recognition materials [12][13]. CDs are oligosaccharides commonly formed by six, seven or

Mannose-decorated cyclodextrin vesicles: The interplay of multivalency and surface density in lectin–carbohydrate recognition

• Ulrike Kauscher and
• Bart Jan Ravoo

Beilstein J. Org. Chem. 2012, 8, 1543–1551, doi:10.3762/bjoc.8.175

• ; cyclodextrins; lectins; molecular recognition; multivalency; vesicles; Introduction The surface modification of materials with carbohydrates has attracted much attention due to the fact that such materials can be compared to and compatible with the cell surface [1]. The “glycocalyx” is a dense layer on the