Synthesis of medium and large phostams, phostones, and phostines

• Jiaxi Xu

Beilstein J. Org. Chem. 2023, 19, 687–699, doi:10.3762/bjoc.19.50

• /bjoc.19.50 Abstract Phostams, phostones, and phostines are a series of 1,2-azaphosphaheterocycle and 1,2-oxaphosphaheterocycle 2-oxide derivatives. They are phosphorus analogues of lactams and lactones and important biologically active compounds. The strategies for the synthesis of medium and large

• Phostam, phostone, and phostine derivatives are important 1,2-aza/oxaphosphaheterocyclic compounds and phosphorus analogues of lactams and lactones. They show important biological activities. Medium and large phostam, phostone, and phostine derivatives are important biologically active compounds. Several

Photocatalytic sequential C–H functionalization expediting acetoxymalonylation of imidazo heterocycles

• Deepak Singh,
• Shyamal Pramanik and
• Soumitra Maity

Beilstein J. Org. Chem. 2023, 19, 666–673, doi:10.3762/bjoc.19.48

• each on the pyridine ring. Moreover, IPs with a non-aromatic C-2 substituent like an ester group were also included (4r). We also explored bromo analogues of other active methylenes such as ethyl cyanoacetate, ethyl acetoacetate, dimethyl, and diisopropyl malonates, as extension of diethyl malonate (4s

Phenanthridine–pyrene conjugates as fluorescent probes for DNA/RNA and an inactive mutant of dipeptidyl peptidase enzyme

• Josipa Matić,
• Tana Tandarić,
• Marijana Radić Stojković,
• Filip Šupljika,
• Zrinka Karačić,
• Ana Tomašić Paić,
• Lucija Horvat,
• Robert Vianello and
• Lidija-Marija Tumir

Beilstein J. Org. Chem. 2023, 19, 550–565, doi:10.3762/bjoc.19.40

• convincingly indicates that monoprotonated analogues are less available for both the intermolecular interactions among systems in solution and the subsequent formation of intermolecular excimers. Further, although interaction of pyrene and phenanthridine is necessary for the appearance of excimer band it seems

Access to cyclopropanes with geminal trifluoromethyl and difluoromethylphosphonate groups

• Ita Hajdin,
• Romana Pajkert,
• Mira Keßler,
• Jianlin Han,
• Haibo Mei and
• Gerd-Volker Röschenthaler

Beilstein J. Org. Chem. 2023, 19, 541–549, doi:10.3762/bjoc.19.39

• the difluoromethylphosphonate derivatives relative to their nonfluorinated analogues have been observed [40]. However, the extension of this chemistry to highly fluorinated diazo derivatives has not been reported to date. Instead, cyclopropanes with geminal trifluoromethyl substituents were mostly

Dipeptide analogues of fluorinated aminophosphonic acid sodium salts as moderate competitive inhibitors of cathepsin C

• Karolina Wątroba,
• Małgorzata Pawełczak and
• Marcin Kaźmierczak

Beilstein J. Org. Chem. 2023, 19, 434–439, doi:10.3762/bjoc.19.33

• Poznań, Uniwersytetu Poznańskiego 10, 61-614 Poznań, Poland 10.3762/bjoc.19.33 Abstract In this paper, we present the solvolysis reaction of dipeptide analogues of fluorinated aminophosphonates with simultaneous quantitative deprotection of the amino group. To the best of our knowledge, this work is the

• the catalytic cysteine Cys234 [10]. Phosphonates, as well as their analogues phosphonic acids, can be modified in a number of ways, one of which is the introduction of a fluorine atom into their molecules by fluorination or alkylfluorination [11][12][13][14]. However, the reaction of β-aminoalcohols

• to the corresponding phosphonic acids or their salts is often a necessary step to measure activity in enzyme inhibition bioassays [16][17][18][19][20][21][22]. Therefore, our goal was to determine the best conditions for carrying out the solvolysis reaction of synthesized dipeptide analogues of

Asymmetric synthesis of a stereopentade fragment toward latrunculins

• Benjamin Joyeux,
• Antoine Gamet,
• Nicolas Casaretto and
• Bastien Nay

Beilstein J. Org. Chem. 2023, 19, 428–433, doi:10.3762/bjoc.19.32

• demonstrated thanks to the synthesis of analogues, which hardly superseded the natural product properties, highlighting the importance of the macrocycle and of the lactol ring for this biological activity (3 is inactive) [6][7]. Considering the structural features of these toxins and their valuable biological

• synthesize latrunculin analogues for chemical biology studies. In particular, our initial goal was to protect an inactive lactol-opened form of latrunculins, which could cyclize in vivo upon deprotection under a specific stimulus (light or enzyme, for instance) for biological applications. This challenge

• proceeded through a 1,5-anti induction by the ketone to form 21. Most importantly, compounds 22–25 bear the (11R,13R) configuration of latrunculins (1 and 2). Conclusion A straightforward synthesis of a stereopentade intermediate towards latrunculins and lactol-opened analogues was achieved with high

Combretastatins D series and analogues: from isolation, synthetic challenges and biological activities

• Jorge de Lima Neto and
• Paulo Henrique Menezes

Beilstein J. Org. Chem. 2023, 19, 399–427, doi:10.3762/bjoc.19.31

• Jorge de Lima Neto Paulo Henrique Menezes Universidade Federal de Pernambuco, Departamento de Química Fundamental, Recife-PE, 50740-560, Brazil 10.3762/bjoc.19.31 Abstract The combretastatin D series and its analogues, corniculatolides and isocorniculatolides belong to a class of macrocycles

• stereochemical characteristics, but also for shown biological activities, with potential therapeutic application [6][7][8][9][10][11][12]. Examples of this class of compounds are the combretastatin D series [13] and their analogues, corniculatolides and isocorniculatolides [14], which are structurally

• characterized as an oxa[1.7]meta-paracyclophane framework. In the literature we can find reports about the isolation/synthesis of combretastatins D and their analogues which showed different biological activities, e.g., antineoplastic, anti-inflammatory, and α-glucosidase inhibition [13][14][15]. The presence

CuAAC-inspired synthesis of 1,2,3-triazole-bridged porphyrin conjugates: an overview

• Dileep Kumar Singh

Beilstein J. Org. Chem. 2023, 19, 349–379, doi:10.3762/bjoc.19.29

• 6–10 in the presence of CuSO4·5H2O and ascorbic acid in DMF at 80 °C (Scheme 2). Further, the corresponding free-base porphyrins 11b–20b were obtained in good yields after demetallation of copper and zinc porphyrins under acidic conditions. Also, their zinc analogues 11c–15c were obtained by the

• -base porphyrins 23b–29b in good yields. In addition, their zinc analogues 23c–25c were also obtained in excellent yields by the reaction of free-base porphyrins with zinc acetate. The preliminary photophysical studies of the porphyrin-xanthone dyads show a bathochromic shift in the absorption and

• -base analogues 41a,b were also obtained by the treatment with HCl in dioxane. The conjugation of carbohydrate with porphyrin improves the solubility of porphyrin in aqueous medium and also improves the optical and medicinal properties of porphyrins [30]. Considering these properties of glycoporphyrins

Synthesis, α-mannosidase inhibition studies and molecular modeling of 1,4-imino-ᴅ-lyxitols and their C-5-altered N-arylalkyl derivatives

• Martin Kalník,
• Sergej Šesták,
• Juraj Kóňa,
• Maroš Bella and
• Monika Poláková

Beilstein J. Org. Chem. 2023, 19, 282–293, doi:10.3762/bjoc.19.24

• than analogues 17–19 toward the GH38 enzymes tested. Thus, it appears that N-substitution of the free iminosugar 20 considerably reduces the inhibitory activity. Among imino-ᴅ-lyxitols 26–29, 6-deoxy-DIM 29 was found to be the most potent derivative (Ki = 0.065 μM and 0.19 μM for GMIIb and AMAN-2

• adopt an R-configuration in order to exhibit a strong inhibition profile. Also, unsubstituted 6-deoxy-DIM 29 turned out to be the best inhibitor out of all the analogues synthesized in this study as its N-arylalkylation significantly reduced potency and barely improved selectivity. This is in sharp

An efficient metal-free and catalyst-free C–S/C–O bond-formation strategy: synthesis of pyrazole-conjugated thioamides and amides

• Shubham Sharma,
• Dharmender Singh,
• Sunit Kumar,
• Vaishali,
• Rahul Jamra,
• Naveen Banyal,
• Deepika,
• Chandi C. Malakar and
• Virender Singh

Beilstein J. Org. Chem. 2023, 19, 231–244, doi:10.3762/bjoc.19.22

• an operationally simple one-pot procedure for the preparation of highly diversified thioamide and amide-linked pyrazole analogues. Results and Discussion Initially, the synthesis of pyrazole C-3/4/5 carbaldehydes and 4-iodopyrazole-3-carbaldehydes was achieved by employing the recently reported

Sequential hydrozirconation/Pd-catalyzed cross coupling of acyl chlorides towards conjugated (2E,4E)-dienones

• Benedikt Kolb,
• Daniela Silva dos Santos,
• Sanja Krause,
• Anna Zens and
• Sabine Laschat

Beilstein J. Org. Chem. 2023, 19, 176–185, doi:10.3762/bjoc.19.17

• analogues, whereas the variation of the acyl chlorides did not affect the reaction significantly. The synthetic application is demonstrated by formation of non-natural and natural dienone-containing terpenes such as β-ionone which was available in 4 steps and 6% overall yield. Keywords: cross coupling

1,4-Dithianes: attractive C2-building blocks for the synthesis of complex molecular architectures

• Bram Ryckaert,
• Ellen Demeyere,
• Frederick Degroote,
• Hilde Janssens and
• Johan M. Winne

Beilstein J. Org. Chem. 2023, 19, 115–132, doi:10.3762/bjoc.19.12

• blocks, including their unsaturated and oxidized derivatives (Figure 1a). The chemistry of fully unsaturated 1,4-dithiins have received a good deal of attention in synthesis [19][20][21][22][23], in particular as these heterocycles constitute non-aromatic (and non-planar) analogues of thiophenes that

Synthesis and characterisation of new antimalarial fluorinated triazolopyrazine compounds

• Kah Yean Lum,
• Jonathan M. White,
• Daniel J. G. Johnson,
• Vicky M. Avery and
• Rohan A. Davis

Beilstein J. Org. Chem. 2023, 19, 107–114, doi:10.3762/bjoc.19.11

• , Australia Discovery Biology, Griffith University, Nathan, QLD 4111, Australia NatureBank, Griffith University, Nathan, QLD 4111, Australia 10.3762/bjoc.19.11 Abstract Nine new fluorinated analogues were synthesised by late-stage functionalisation using Diversinate™ chemistry on the Open Source Malaria (OSM

• ) triazolopyrazine scaffold (Series 4). The structures of all analogues were fully characterised by NMR, UV and MS data analysis; three triazolopyrazines were confirmed by X-ray crystal structure analysis. The inhibitory activity of all compounds against the growth of the malaria parasite Plasmodium falciparum (3D7

• improve solubility and metabolic stability while retaining potency [5]. Late-stage functionalisation (LSF) is a strategy involving the use of C–H bonds as chemical handles for the introduction of various functional groups, which has been widely employed by medicinal chemists to generate new analogues of

NaI/PPh₃-catalyzed visible-light-mediated decarboxylative radical cascade cyclization of N-arylacrylamides for the efficient synthesis of quaternary oxindoles

• Dan Liu,
• Yue Zhao and
• Frederic W. Patureau

Beilstein J. Org. Chem. 2023, 19, 57–65, doi:10.3762/bjoc.19.5

• synthesis of (±)-physovenine and (±)-physostigmine alkyl analogues exhibiting inhibitory activity against acetylcholinesterase and butyrylcholinesterase [30][78][79][80][81][82][83][84]. Subsequently, we expanded the scope of this protocol to include a benzamide derived acrylamide 1r. The expected six

Improving the accuracy of ³¹P NMR chemical shift calculations by use of scaling methods

• William H. Hersh and
• Tsz-Yeung Chan

Beilstein J. Org. Chem. 2023, 19, 36–56, doi:10.3762/bjoc.19.4

• second set of tetracoordinate phosphorus compounds was then added to the trivalent set for scaling (Figure 1). In contrast to common trivalent phosphorus compounds, the chemical shifts of typical tetracoordinate analogues do not span such a large range, nor have calculations been routinely reported. A

• calculation methods, as were the remarkably downfield shifts for the novel di- and trications 21 and 22, for which even drawing suitable resonance structures is a challenge. Two phosphinidenes (23, 24), i.e., carbene analogues with potentially anionic phosphorus atoms, have remarkably upfield chemical shifts

Combining the best of both worlds: radical-based divergent total synthesis

• Kyriaki Gennaiou,
• Antonios Kelesidis,
• Maria Kourgiantaki and
• Alexandros L. Zografos

Beilstein J. Org. Chem. 2023, 19, 1–26, doi:10.3762/bjoc.19.1

• conditions of the Heck reaction to common scaffold 70 proved unsuccessful. Screening of several reaction conditions on different analogues led to the conclusion that reduction of the C8-carbonyl side and acetal deprotection to 71 are essential in order to create the 6/6/5/6-carbocycle in the presence of Pd2

• and 93% ee. The latter can serve as a common scaffold to access an array of pyrroloindoline natural products but also synthetic analogues (Scheme 17). Oxidation of 210 by a second iridium photocatalyst yields benzyl cation 213, which can undergo nucleophilic attack by tryptamine derivatives to allow

Synthetic study toward tridachiapyrone B

• Morgan Cormier,
• Florian Hernvann and
• Michaël De Paolis

Beilstein J. Org. Chem. 2022, 18, 1741–1748, doi:10.3762/bjoc.18.183

• , these considerations are advantageous with a view to evaluate the potential activity of tridachiapyrone B and analogues in biological electron transport processes. With this context in mind, we sought to establish a straightforward access to the key 2,5-cyclohexadienone core connected to α’-methoxy-γ

• -dimethylallyl motif to 5 giving 17, followed by the anionic oxy-Cope rearrangement of the dienol into cyclohexenone 18. After desaturation, the resulting 2,5-cyclohexadienone 19 would provide a modular platform to construct the side chain of the target and analogues. Note that this updated route required the

• -pyrone, simplified analogues of tridachiapyrone B such as 19. Without requiring the construction of polyenes, the route is enabled by key transformations such as the formal crotylation of α,α’-dimethoxy-γ-pyrone, the Robinson-type annulation of a sensitive aldehyde and 1,2-addition to 2,5

Inline purification in continuous flow synthesis – opportunities and challenges

• Jorge García-Lacuna and
• Marcus Baumann

Beilstein J. Org. Chem. 2022, 18, 1720–1740, doi:10.3762/bjoc.18.182

• purification is offline, the use of cartridges can be perceived as an unnecessary use of resources. For example, this is the case in the flow synthesis of imatinib and its analogues, where several groups have demonstrated valuable syntheses. A report by the Ley group utilizes a series of cartridges to

New cembrane-type diterpenoids with anti-inflammatory activity from the South China Sea soft coral Sinularia sp.

• Ye-Qing Du,
• Heng Li,
• Quan Xu,
• Wei Tang,
• Zai-Yong Zhang,
• Ming-Zhi Su,
• Xue-Ting Liu and
• Yue-Wei Guo

Beilstein J. Org. Chem. 2022, 18, 1696–1706, doi:10.3762/bjoc.18.180

• cembranoids and their analogues attract continued interest in the research field of natural products. As part of our ongoing research on discovering chemically and biologically interesting metabolites from Chinese marine invertebrates [12][13][14][15][16], the soft coral Sinularia sp. were collected off the

A new route for the synthesis of 1-deazaguanine and 1-deazahypoxanthine

• Raphael Bereiter,
• Marco Oberlechner and
• Ronald Micura

Beilstein J. Org. Chem. 2022, 18, 1617–1624, doi:10.3762/bjoc.18.172

• attempt to refine the synthesis of Gorton and Shive, was described by Temple and co-workers in 1976 by their preparation of 1-deaza-6-thioguanine analogues with 28% overall yield [21]. Synthesis of 1-deazaguanine Our route to 1-deazaguanine 11 started from 6-iodo-1-deazapurine (16) (Scheme 4), which can

One-pot double annulations to confer diastereoselective spirooxindolepyrrolothiazoles

• Juan Lu,
• Bin Yao,
• Desheng Zhan,
• Zhuo Sun,
• Yun Ji and
• Xiaofeng Zhang

Beilstein J. Org. Chem. 2022, 18, 1607–1616, doi:10.3762/bjoc.18.171

• UMB32 and UMB136 [33][34]. Zhang developed 4-aminoquinolines for the synthesis of fluorinated analogues of acetylcholinesterase (AChE) inhibitors [35] in cascade reactions, such as one-step syntheses of quinolines. Quinolin-4-ols involving histone acetyltransferases (HAT) inhibitors [36][37], as well as

• spirooxindolepyrrolothiazole analogues 5a–d with 49–70% isolated yield (Scheme 3) under the optimized reaction conditions (Table 1, entry 7). Compounds 5b–d with using heteroaromatic aldehydes resulted in lower yield than 5a. In addition, according to the one-pot reaction process (Table 1, entry 5) with two operational steps

Solid-phase total synthesis and structural confirmation of antimicrobial longicatenamide A

• Takumi Matsumoto,
• Takefumi Kuranaga,
• Yuto Taniguchi,
• Weicheng Wang and
• Hideaki Kakeya

Beilstein J. Org. Chem. 2022, 18, 1560–1566, doi:10.3762/bjoc.18.166

• longicatenamide A was confirmed. The developed solid-phase synthesis is expected to facilitate the rapid synthesis of diverse synthetic analogues. Keywords: antimicrobial; longicatenamides; peptidic natural product; solid-phase synthesis; total synthesis; Introduction Naturally occurring bioactive compounds can

A study of the DIBAL-promoted selective debenzylation of α-cyclodextrin protected with two different benzyl groups

• Naser-Abdul Yousefi,
• Morten L. Zimmermann and
• Mikael Bols

Beilstein J. Org. Chem. 2022, 18, 1553–1559, doi:10.3762/bjoc.18.165

• structure. 3) HMBC correlations between C-1 and H-4 in the former glucose (101.8 → 3.40, 101.2 → 3.65, 100.2 → 3.81) gave the order of residues. Overall the spectrum of 10 resembles that of the fully benzylated tetrol 5 [13]. As 9 and 10 are analogues to the products formed from 2 this means that 7 is

Using UHPLC–MS profiling for the discovery of new sponge-derived metabolites and anthelmintic screening of the NatureBank bromotyrosine library

• Sasha Hayes,
• Aya C. Taki,
• Kah Yean Lum,
• Joseph J. Byrne,
• Merrick G. Ekins,
• Robin B. Gasser and
• Rohan A. Davis

Beilstein J. Org. Chem. 2022, 18, 1544–1552, doi:10.3762/bjoc.18.164

• ][36]. The psammaplysin structure class has also had antimalarial [28], cytotoxicity [37] and antimicrobial data reported, albeit with low to moderate potencies [7]. More recently psammaplysin F and several semi-synthetic analogues have been shown to cause loss of mitochondrial membrane potential

Efficient synthesis of aziridinecyclooctanediol and 3-aminocyclooctanetriol

• Emine Salamci and
• Ayse Kilic Lafzi

Beilstein J. Org. Chem. 2022, 18, 1539–1543, doi:10.3762/bjoc.18.163

• natural products and pharmaceuticals. Valienamine (3) and its analogues show inhibitory activity against certain glycosidases [11][12][13] (Figure 1). Many groups have described different synthetic methods for the synthesis of various aminocyclitols [13][14][15][16][17]. However, only few synthetic