Synthesis of multiply fluorinated N-acetyl-D-glucosamine and D-galactosamine analogs via the corresponding deoxyfluorinated glucosazide and galactosazide phenyl thioglycosides

• Vojtěch Hamala,
• Lucie Červenková Šťastná,
• Martin Kurfiřt,
• Petra Cuřínová,
• Martin Dračínský and
• Jindřich Karban

Beilstein J. Org. Chem. 2021, 17, 1086–1095, doi:10.3762/bjoc.17.85

• donors for the installation of a 1,2-cis-linked multifluorinated GlcNAc and GalNAc moiety. Results and Discussion Our approach to the synthesis is summarized in Scheme 1. Challenging regio- and stereoselective introduction of fluorine at C3 and C4 of the pyranose ring, together with azide installation at

Prins cyclization-mediated stereoselective synthesis of tetrahydropyrans and dihydropyrans: an inspection of twenty years

• Asha Budakoti,
• Pradip Kumar Mondal,
• Prachi Verma and
• Jagadish Khamrai

Beilstein J. Org. Chem. 2021, 17, 932–963, doi:10.3762/bjoc.17.77

• ion intermediate in a stereoselective manner for THP ring formation as shown in Scheme 3. The outcome of exclusive cis-stereoselectivity in the Prins cyclization might be attributed to the most favorable conformation adopted by 12 with equatorial orientation of the 2,6-substituents (R1 and R2). Alder

• and co-workers explained the formation of all-cis-2,4,6-trisubstituted THPs with the help of density functional theory (DFT) and stated that in the presence of an external nucleophile, the stabilization of the carbocation intermediate is favored through hyperconjugation [28]. The vacant p-orbital of

• -orbital at C4. These orbital stabilizations, along with the lack of 1,3-diaxial interaction experienced by the incoming nucleophile (mostly halide) leads to the preferential equatorial attack over an axial attack by the nucleophile (Scheme 3) to give all-cis-2,4,6-trisubstituted THPs. In the absence of an

Synthetic reactions driven by electron-donor–acceptor (EDA) complexes

• Zhonglie Yang,
• Yutong Liu,
• Kun Cao,
• Xiaobin Zhang,
• Hezhong Jiang and
• Jiahong Li

Beilstein J. Org. Chem. 2021, 17, 771–799, doi:10.3762/bjoc.17.67

• transfer takes place, giving radicals 33 and 34. Radical 34 is quenched by oxygen, and radical 33 attacks 31 in order to form radical 35. Intermediate 36 is achieved by cyclization of radical 35, followed by hydrogen-atom removal, providing the cis-tetrahydroquinoline 32 (Scheme 11). It is worth noting

• , including cis-fused pyrrolo- and furanoindolines. The X-ray single-crystal analysis showed that the EDA complex is received in the form of a face-to-face π–π complex, and the ratio of donor to acceptor is 1:1. In the same year, based on previous experimental phenomena and data, Melchiorre and colleagues [45

• perfluoroalkylated pyrimidines 26 initiated by an EDA complex. Synthesis of phenanthridine derivative 29 initiated by an EDA complex. Synthesis of cis-tetrahydroquinoline derivative 32 initiated by an EDA complex. Mechanism of the synthesis of cis-tetrahydroquinoline derivative 32. Synthesis of phenanthridine

Stereoselective syntheses of 3-aminocyclooctanetriols and halocyclooctanetriols

• Emine Salamci and
• Yunus Zozik

Beilstein J. Org. Chem. 2021, 17, 705–710, doi:10.3762/bjoc.17.59

• Emine Salamci Yunus Zozik Department of Chemistry, Faculty of Sciences, Atatürk University, 25240 Erzurum, Turkey 10.3762/bjoc.17.59 Abstract The efficient synthesis of two new stereoisomeric 3-aminocyclooctanetriols and their new halocyclitol derivatives starting from cis,cis-1,3-cyclooctadiene

• are reported. Reduction of cyclooctene endoperoxide, obtained by photooxygenation of cis,cis-1,3-cyclooctadiene, with zinc yielded a cyclooctene diol followed by acetylation of the hydroxy group, which gave dioldiacetate by OsO4/NMO oxidation. The cyclooctane dioldiacetate prepared was converted to

• of two new 3-aminocyclooctanetriols and some chlorinated C8-cyclitols starting from cis,cis-1,3-cyclooctadiene. Results and Discussion For the synthesis of amino- and chlorocyclitols and their derivatives, we first selected endoperoxide 5 as the starting molecule, which was prepared using a procedure

α,γ-Dioxygenated amides via tandem Brook rearrangement/radical oxygenation reactions and their application to syntheses of γ-lactams

• Mikhail K. Klychnikov,
• Radek Pohl,
• Ivana Císařová and
• Ullrich Jahn

Beilstein J. Org. Chem. 2021, 17, 688–704, doi:10.3762/bjoc.17.58

• lactams 12a–k in 66–93% yields. The thermal cyclization of α-(aminoxy)amide 9a provided two diastereomers of lactam 12a in a 2:1 trans/cis ratio (Table 3, entry 1). The N-allylic amides 9b–f provided lactams 12b–f as mixtures of four inseparable diastereomers in which those with trans orientation of the

• substituent at the nitrogen atom also plays essentially no role for the diastereoselectivity of the cyclization (Table 3, entry 10 vs entry 9). The minor cis-diastereomer of N-(1-β-naphthylethyl)pyrrolidone 12j crystallized after oxidation to ketone 13j and its configuration was unequivocally established by X

• -ray crystallography (Figure 3, vide infra). Similarly, the minor cis-diastereomer of hydroxy lactam 12k crystallized and its configuration was confirmed. The configuration of the other lactams was assigned by analogy, by base-mediated equilibration and oxidation experiments (vide infra). The α

Valorisation of plastic waste via metal-catalysed depolymerisation

• Francesca Liguori,
• Carmen Moreno-Marrodán and
• Pierluigi Barbaro

Beilstein J. Org. Chem. 2021, 17, 589–621, doi:10.3762/bjoc.17.53

• cosmetics [147]. The catalyst could be recycled, however, with reduced performance due to Pt nanoparticle oxidation. 3.1.2 Polybutadiene (PBD): Partial depolymerisation of 1,4-PBD (cis, trans, Mw 1800–500000 g⋅mol−1) was achieved by an unconventional tandem ring-opening–ring-closing metathesis route

Designed whole-cell-catalysis-assisted synthesis of 9,11-secosterols

• Marek Kõllo,
• Marje Kasari,
• Villu Kasari,
• Tõnis Pehk,
• Ivar Järving,
• Margus Lopp,
• Arvi Jõers and
• Tõnis Kanger

Beilstein J. Org. Chem. 2021, 17, 581–588, doi:10.3762/bjoc.17.52

• to its toxicity, the oxidation rate affording trans-diols was very slow in comparison to that for cis-diols. Using an even longer reaction time and stoichiometric amount of the reagent, diol 5 was not oxidized to the corresponding dicarbonyl compound 8. However, using NaOCl·5H2O as an oxidant [31

Menthyl esterification allows chiral resolution for the synthesis of artificial glutamate analogs

• Kenji Morokuma,
• Shuntaro Tsukamoto,
• Kyosuke Mori,
• Kei Miyako,
• Ryuichi Sakai,
• Raku Irie and
• Masato Oikawa

Beilstein J. Org. Chem. 2021, 17, 540–550, doi:10.3762/bjoc.17.48

• conversion of oxanorbornene (rac)-13 to heterotricycle (rac)-16 through the eight-membered-ring formation would be owing to the cis-relationships of the pentenyl and vinyl groups on the ring B of (rac)-15, which allows the proximal arrangement of the reacting sites in the RCM. The N-Boc derivatization of

Synthetic strategies of phosphonodepsipeptides

• Jiaxi Xu

Beilstein J. Org. Chem. 2021, 17, 461–484, doi:10.3762/bjoc.17.41

• and cis isomers of 2-hydroxy-2-oxo-3-[(phenoxyacetyl)amino]-1,2-oxaphosphorinane-6-carboxylic acid (16, Figure 3) were prepared and evaluated as inhibitors of the zinc-containing β-lactamase II from B. cereus. However, neither stereoisomer had any significant activity [6]. The phosphonodepsidipeptide

Biochemistry of fluoroprolines: the prospect of making fluorine a bioelement

• Vladimir Kubyshkin,
• Rebecca Davis and
• Nediljko Budisa

Beilstein J. Org. Chem. 2021, 17, 439–460, doi:10.3762/bjoc.17.40

• featured in proline residues as well as the high conformational stability of the trans- and cis-amide conformers assign proline another important structural role: the structure freezer. The incorporation of proline residues in connecting loops has been described as a general strategy towards the

• proline is the comparatively similar intrinsic stability of the amide rotamers in the peptidyl-prolyl fragments. Usually, a peptide bond exhibits a high preference towards the trans-amide, represented by a dihedral angle ω of 180°. In peptidyl-prolyl, however, trans- and cis-conformations (ω = 180° and 0

• °, respectively) are of comparatively similar stability, while the trans-amide is more stable (Figure 7) [53]. In a folded protein, the overall conformation dictates the amide rotation state. Nonetheless, when the protein is unfolded, the trans/cis isomerism can create numerous subpopulations, and the resulting

CF₃-substituted carbocations: underexploited intermediates with great potential in modern synthetic chemistry

• Anthony J. Fernandes,
• Armen Panossian,
• Bastien Michelet,
• Agnès Martin-Mingot,
• Frédéric R. Leroux and
• Sébastien Thibaudeau

Beilstein J. Org. Chem. 2021, 17, 343–378, doi:10.3762/bjoc.17.32

The preparation and properties of 1,1-difluorocyclopropane derivatives

• Kymbat S. Adekenova,
• Peter B. Wyatt and
• Sergazy M. Adekenov

Beilstein J. Org. Chem. 2021, 17, 245–272, doi:10.3762/bjoc.17.25

• )cadmium (51) precipitates quantitatively as a white powder from the reaction of CF3I with Cd(Et)2 (molar ratio 2.5:1) (Scheme 21) in chloroform at −40 °C. A warming to −5 °C was sufficient to liberate difluorocarbene, which was trapped by the addition to alkenes. Thus, cis-stilbene (52) gave the gem

• hydrogenation of difluorocyclopropenes [73][79]. Enzymatic hydrolysis or esterification: The first example of the enzymatic resolution of gem-difluorocyclopropanes was reported by Itoh et al. [80]. The prochiral diacetate of cis-1,2-bis-(hydroxymethyl)-3,3-difluorocyclopropane was converted into the

• the activation energies for both cis–trans-isomerization and for the transformation of vinylcyclopropanes into cyclopentenes. Both processes could occur by a C–C-bond homolysis to form a diradical. Computational studies by Gety, Hrovat, and Borden indicated that there would be a preference for

Au(III) complexes with tetradentate-cyclam-based ligands

• Ann Christin Reiersølmoen,
• Thomas N. Solvi and
• Anne Fiksdahl

Beilstein J. Org. Chem. 2021, 17, 186–192, doi:10.3762/bjoc.17.18

• ) catalysis of the cyclopropanation reaction, where complex 5a-Au(III) and 6a-Au(III) gave full conversion in 1 hour and 12 hours, respectively (Table 1, entries 4 and 5). The cyclopropyl product 11 was obtained in >90% yield and high cis diastereoselectivity (up to 74% de), similar to our previous studies

• [51], which showed that JohnPhos-Au(I) and pyr-menthol-Au(III) complexes provided high amounts of the initially formed cis diastereomer in this model reaction. In contrast, some BOX-Au(III) complexes have the additional ability to rapidly transform the initially formed cis product into the isomerized

• trans product. Thus, the proper choice of the gold catalyst allows highly stereoselective formation of either cis or trans cyclopropanation products and facilitates the isolation of pure isomers. Despite the chiral nature of these ligands, no enantioselectivity was observed in the test reactions

Multiswitchable photoacid–hydroxyflavylium–polyelectrolyte nano-assemblies

• Alexander Zika and
• Franziska Gröhn

Beilstein J. Org. Chem. 2021, 17, 166–185, doi:10.3762/bjoc.17.17

• photodimerization [55][56][57], photocleavage [58][59], and cis–trans photoisomerization [60][61][62][63][64][65]. While it had been well-established to access oligomer formation and gelation, a light-switchable particle size has remained a challenge until realized through the mentioned electrostatic self-assembly

Novel library synthesis of 3,4-disubstituted pyridin-2(1H)-ones via cleavage of pyridine-2-oxy-7-azabenzotriazole ethers under ionic hydrogenation conditions at room temperature

• Romain Pierre,
• Anne Brethon,
• Sylvain A. Jacques,
• Aurélie Blond,
• Sandrine Chambon,
• Sandrine Talano,
• Catherine Raffin,
• Branislav Musicki,
• Claire Bouix-Peter,
• Loic Tomas,
• Gilles Ouvry,
• Rémy Morgentin,
• Laurent F. Hennequin and
• Craig S. Harris

Beilstein J. Org. Chem. 2021, 17, 156–165, doi:10.3762/bjoc.17.16

• purification in between steps. As we planned to fix substitution at C-4 to a cis-diaminocyclohexane fragment and focus our main exploration from the amide vector at C-3, we envisaged it would be more logical to exploit the cheaper and more readily-available precursor, 2-chloro-4-fluoronicotinic acid (4) with a

• morpholine amide 7. The synthesis started by selective SNAr reaction with 4 and tert-butyl ((cis)-4-aminocyclohexyl)carbamate affording the intermediate nicotinic acid 5 in 70% yield without the need for chromatography. Subsequent amide coupling using TBTU afforded 2-chloro precursor 6 in excellent yield

• ((cis)-3-aminocyclobutyl)carbamate afforded the undesired regioisomer 28 as the majority product (Scheme 5). As we were unable to exploit intermediate 26, we turned our attention to the pyridine-2-(1H)-one building block 30, easily prepared by hydrolysis of the C-2–F bond in high yield and without the

Progress in the total synthesis of inthomycins

• Bidyut Kumar Senapati

Beilstein J. Org. Chem. 2021, 17, 58–82, doi:10.3762/bjoc.17.7

• triene system, which is susceptible to cis–trans isomerization, have been longstanding problems in the area of inthomycins. The problems are more acute for the construction of enantioenriched β-hydroxycarbonyl units as evident from the recent reports [19][20][21]. Since the pioneering works of Henaff and

Recent progress in the synthesis of homotropane alkaloids adaline, euphococcinine and N-methyleuphococcinine

• Dimas J. P. Lima,
• Antonio E. G. Santana,
• Michael A. Birkett and
• Ricardo S. Porto

Beilstein J. Org. Chem. 2021, 17, 28–41, doi:10.3762/bjoc.17.4

• (−)-48, in 88% yield, as a single diastereoisomer. Then, (−)-48 was treated with trimethyl orthoformate to provide formamide (−)-49, being converted to cis-2,6-dialkenylformamide (−)-50 by treatment with the Lindlar catalyst. (−)-50 underwent a ring-closing metathesis efficiently in the presence of the

All-carbon [3 + 2] cycloaddition in natural product synthesis

• Zhuo Wang and
• Junyang Liu

Beilstein J. Org. Chem. 2020, 16, 3015–3031, doi:10.3762/bjoc.16.251

• ). The reaction between ethyl 2,3-butadienoate (82) and diethyl fumarate (83) in the presence of 10 mol % of triphenylphosphine afforded trans-84 in 67% yield. Under the same conditions, the use of diethyl maleate in place of diethyl fumarate (83) will give cis-84 in 46% yield (not shown). Lu and co

Chiral anion recognition using calix[4]arene-based ureido receptors in a 1,3-alternate conformation

• Tereza Horáčková,
• Jan Budka,
• Vaclav Eigner,
• Wen-Sheng Chung,
• Petra Cuřínová and
• Pavel Lhoták

Beilstein J. Org. Chem. 2020, 16, 2999–3007, doi:10.3762/bjoc.16.249

• isotherms obtained from the complexation-induced chemical shift (CIS) values of urea NH protons or aromatic CH signals (Figure 5) [50][51][52]. The nonlinear curve-fitting of the experimental data was performed using the freely available software Bindfit [53]. The stoichiometry of the complexes was

Easy access to a carbohydrate-based template for stimuli-responsive surfactants

• Thomas Holmstrøm,
• Daniel Raydan and
• Christian Marcus Pedersen

Beilstein J. Org. Chem. 2020, 16, 2788–2794, doi:10.3762/bjoc.16.229

• surfactant with amphiphilic properties induced by the presence of Zn2+ ions (Figure 1b). In order to synthesize a glucopyranose-based molecular switch, a 2,4- or 3,6-functional group pattern is needed as these positions reside cis on the ring, making them pointing in the same direction of the 1C4

Ring-closing metathesis of prochiral oxaenediynes to racemic 4-alkenyl-2-alkynyl-3,6-dihydro-2H-pyrans

• Viola Kolaříková,
• Markéta Rybáčková,
• Martin Svoboda and
• Jaroslav Kvíčala

Beilstein J. Org. Chem. 2020, 16, 2757–2768, doi:10.3762/bjoc.16.226

• considered for the dihydropyran 12b, namely all combinations of equatorial or axial positions of the but-2-ynyl substituent, three staggered conformations of the prop-1-ynyl group with respect to the C–O bond of the ring, and three conformations of the dienyl system (s-trans and two tilted s-cis

• , this conformation cannot enter a Diels–Alder reaction and hence the more stable s-cis conformation with otherwise identical conformational arrangement of the other two parameters, although less stable by about 9 kJ/mol, was considered as the starting geometry for the Diels–Alder reaction (Figure 6

• 46 and 76 kJ/mol. From the activation free Gibbs energy results that two main stereoisomers should be formed, namely the endo-trans 14B (99%) and the exo-cis 14C (1%). The difference among the computed (99% and 1%) and experimentally observed values (29% and 16%) can be explained by a participation

A heterobimetallic tetrahedron from a linear platinum(II)-bis(acetylide) metalloligand

• Matthias Hardy,
• Marianne Engeser and
• Arne Lützen

Beilstein J. Org. Chem. 2020, 16, 2701–2708, doi:10.3762/bjoc.16.220

• platinum(II) ions to be especially suitable to prepare a linear metalloligand due to their highly predictable square-planar coordination environment that can easily be employed to access tetravalent planar or divalent V-shaped cis- or linear trans-configurated complexes [43][44][45]. In this context

• platinum(II)-bis(acetylide) complexes [46][47] proved useful as building blocks for the construction of polymers [48], rings [49][50] and cages [36][42][51]. These neutral compounds are usually easy-to-access, rather stable and the cis- and trans-isomers can be separated efficiently. In this work we

A consensus-based and readable extension of Linear Code for Reaction Rules (LiCoRR)

• Benjamin P. Kellman,
• Yujie Zhang,
• Emma Logomasini,
• Eric Meinhardt,
• Karla P. Godinez-Macias,
• Austin W. T. Chiang,
• James T. Sorrentino,
• Chenguang Liang,
• Bokan Bao,
• Yusen Zhou,
• Sachiko Akase,
• Isami Sogabe,
• Thukaa Kouka,
• Elizabeth A. Winzeler,
• Iain B. H. Wilson,
• Matthew P. Campbell,
• Sriram Neelamegham,
• Frederick J. Krambeck,
• Kiyoko F. Aoki-Kinoshita and
• Nathan E. Lewis

Beilstein J. Org. Chem. 2020, 16, 2645–2662, doi:10.3762/bjoc.16.215

• rules (Table 3: GR1). The reaction rules table generated by Spahn et al. also provided localization information, which is either cis, trans, or medial to denote the Golgi compartment where the reactions happen [13][14]. The subcellular localization of a reaction, in the endoplasmic reticulum, Golgi

Synthesis of 4-substituted azopyridine-functionalized Ni(II)-porphyrins as molecular spin switches

• Jannis Ludwig,
• Tobias Moje,
• Fynn Röhricht and
• Rainer Herges

Beilstein J. Org. Chem. 2020, 16, 2589–2597, doi:10.3762/bjoc.16.210

• azopyridines as covalently attached photoswitchable ligands. The molecules are designed in such a way that the azopyridines coordinate to the Ni ion if the azo unit is in cis configuration. For steric reasons no intramolecular coordination is possible if the azopyridine unit adopts the trans configuration

• . Photoisomerization of the azo unit between cis and trans is achieved upon irradiation with 505 nm (trans→cis) and 435 nm (cis→trans). Concurrently with the isomerization and coordination/decoordination, the spin state of the Ni ion switches between singlet (low-spin) and triplet (high-spin). Previous studies have

• the switchable ligand). This approach has been dubbed “record player” design for obvious reasons (Figure 1a). The Ni-porphyrin (“disk”) is low-spin if the azo-aryl unit (“tone arm”) is in trans configuration. Upon switching to the bent cis configuration, the lone pair of the pyridine (or imidazole

Synthesis of novel fluorinated building blocks via halofluorination and related reactions

• Attila Márió Remete,
• Tamás T. Novák,
• Melinda Nonn,
• Matti Haukka,
• Ferenc Fülöp and
• Loránd Kiss

Beilstein J. Org. Chem. 2020, 16, 2562–2575, doi:10.3762/bjoc.16.208

• ). Our experiments were continued with compound 4, the cis isomer of the diester (rac)-1. In this case, two different halonium ion intermediates can be formed, leading to the possible products (rac)-5a,b and (rac)-6a,b (Scheme 3). Since the axial ester group somewhat hinders the attack of the large

• -Fluor®, CH2Cl2, 0 °C to rt, 27 h, 61% yield of two isomeric bromofluorinated products in a ≈11:10 ratio). We continued our synthetic explorations with unsaturated fused ring systems. Our first choice was the easily accessible N-benzylated cis-tetrahydrophthalic imide 7. Unfortunately, both bromo- and

• iodofluorination of 7 yielded a mixture of two isomeric halofluorinated products for which the separation failed (Scheme 5). Since halofluorinations of the trans-diester (rac)-1 proceeded more selectively than analogous reactions of the stereoisomeric cis-diester 4, it seemed reasonable to prepare the N-benzylated