Cationic oligonucleotide derivatives and conjugates: A favorable approach for enhanced DNA and RNA targeting oligonucleotides

• Mathias B. Danielsen and
• Jesper Wengel

Beilstein J. Org. Chem. 2021, 17, 1828–1848, doi:10.3762/bjoc.17.125

• effects of different amine-functionalized groups. Beginning with the 2’-O-alkylated RNA nucleotides (Table 4) it has been shown that the introduction of an aminopropyl group via 2’-O-alkylation (modification 34) leads to moderately improved hybridization properties for the modified ON against its RNA

• [117][118][119][120][121]. Rahman, Obika and co-workers investigated the properties of ONs modified with the aminoalkyl–PS linkage [117], based on the post-synthetic alkylation protocol developed earlier by Chen and Gothelf reacting PS-ONs with 2-bromoethylammonium bromide in HEPES (4-(2-hydroxyethyl

• formed by guanine alkylation prompted a switch to a 12-mer sequence containing only cytosine and thymine [117]. Conjugation of the desired aminoalkyl moieties with the stereo-pure PS-ON (Rp or Sp) gave the aminoalkyl–PS linkages shown in Table 9A, in yields between 24–55%. Extensive work has been carried

Development of N-F fluorinating agents and their fluorinations: Historical perspective

• Teruo Umemoto,
• Yuhao Yang and
• Gerald B. Hammond

Beilstein J. Org. Chem. 2021, 17, 1752–1813, doi:10.3762/bjoc.17.123

• , Banks et al. reported a new series of N-fluoro diquaternary ammonium salts, 1-alkyl-4-fluoro-1,4-diazoniabicylco[2.2.2]octane salts 16-3a–d (Scheme 33) [42]. The salts 16-3 were synthesized in high yields after alkylation of 1,4-diazabicyclo[2.2.2]octane (16-1), followed by the Umemoto’s fluorination

A recent overview on the synthesis of 1,4,5-trisubstituted 1,2,3-triazoles

• Pezhman Shiri,
• Ali Mohammad Amani and
• Thomas Mayer-Gall

Beilstein J. Org. Chem. 2021, 17, 1600–1628, doi:10.3762/bjoc.17.114

• -butynoate successfully generated the metal-bound heterocyclic complexes. The alkylation reaction of 171a led to the bond cleavage between ruthenium and nitrogen to produce several 1-alkylated 4,5-bis(ethoxycarbonyl)-1,2,3-triazoles 172 [66]. Herein, the sodium azide initially reacts with [Ru]–Cl 168 to

Methodologies for the synthesis of quaternary carbon centers via hydroalkylation of unactivated olefins: twenty years of advances

• Thiago S. Silva and
• Fernando Coelho

Beilstein J. Org. Chem. 2021, 17, 1565–1590, doi:10.3762/bjoc.17.112

• nucleophiles, along with transition-metal catalysis, in olefin alkylation reactions [18][19][20][21]. Apart from the early examples of olefin functionalization with transition metals, such as the well-known ethylene oxidation catalyzed by Pd(II) (the Wacker reaction) [23][24], the use of carbon nucleophiles in

• of a Lewis acid (LA) to activate 1,3-dicarbonyls through the formation of metallic enolates was recently explored by Schindler’s group for the intramolecular tert-alkylation of prenylated β-keto esters 103 (Scheme 39A

Free-radical cyclization approach to polyheterocycles containing pyrrole and pyridine rings

• Ivan P. Mosiagin,
• Olesya A. Tomashenko,
• Dar’ya V. Spiridonova,
• Mikhail S. Novikov,
• Sergey P. Tunik and
• Alexander F. Khlebnikov

Beilstein J. Org. Chem. 2021, 17, 1490–1498, doi:10.3762/bjoc.17.105

• [3,4-c]isoquinolin-4-ium bromide 8. Free-radical cyclization of dihalogeno-substituted salts 9 and 12. N-alkylation of the base 6a. Isomerization of compounds 17a and 18a. N-Alkylation of compounds 18a and 19. Optimization of the reaction conditions for the cyclization of 1a with TTMSS/AIBN in MeCN

Cascade intramolecular Prins/Friedel–Crafts cyclization for the synthesis of 4-aryltetralin-2-ols and 5-aryltetrahydro-5H-benzo[7]annulen-7-ols

• Jie Zheng,
• Shuyu Meng and
• Quanrui Wang

Beilstein J. Org. Chem. 2021, 17, 1481–1489, doi:10.3762/bjoc.17.104

• affording intermediary benzyl carbenium ions, which are then trapped by a variety of electron-rich aromatics via Friedel–Crafts alkylation. This cascade Prins/Friedel–Crafts cyclization protocol paves an expedient path to medicinally useful 4-aryltetralin-2-ol and 5-aryltetrahydro-5H-benzo[7]annulen-7-ol

• intermediate 6 then would undergo a Prins-type intramolecular cyclization with the olefinic bond to produce a stable benzyl carbocation 7, that may be trapped through a Friedel–Crafts alkylation with an aromatic substrate or through the reaction with an external nucleophile to afford the target product 8

• )acetaldehydes or 3-(2-vinylphenyl)propanal by action with BF3 to generate benzyl carbenium ions that are captured by a Friedel–Crafts alkylation reaction with a range of electron-rich benzenes or heteroaromatics. The method has a relatively broad applicability allowing variation in the benzene ring as well as

Iodine-catalyzed electrophilic substitution of indoles: Synthesis of (un)symmetrical diindolylmethanes with a quaternary carbon center

• Thanigaimalai Pillaiyar,
• Masoud Sedaghati,
• Andhika B. Mahardhika,
• Lukas L. Wendt and
• Christa E. Müller

Beilstein J. Org. Chem. 2021, 17, 1464–1475, doi:10.3762/bjoc.17.102

• , and scalability to obtain gram amounts for biological studies. Selected compounds were found to display affinity for cannabinoid receptors, which are promising drug targets for the treatment of inflammatory and neurodegenerative diseases. Keywords: alkylation of indole; anti-inflammatory; binding

• was indeed essential for the alkylation of indoles. We further investigated the new method’s feasibility for large-scale synthesis (Figure 4). Thus, 2,2,2-trifluoro-1-(5-methoxy-1H-indol-3-yl)-1-phenylethan-1-ol (1a, 1.0 g, 3.10 mmol) and 2,2,3,3,3-pentafluoro-1-(5-methoxy-1H-indol-3-yl)-1

• and efficient synthetic protocol provides a convenient access to a wide range of unsymmetrical trifluoromethylated 3,3'-diindolylmethanes via I2-catalyzed Friedel–Crafts alkylation reaction of trifluoromethylated (indol-3-yl)-1-phenylethan-1-ols with substituted indoles. The method was also extended

Design, synthesis and photophysical properties of novel star-shaped truxene-based heterocycles utilizing ring-closing metathesis, Clauson–Kaas, Van Leusen and Ullmann-type reactions as key tools

• Shakeel Alvi and
• Rashid Ali

Beilstein J. Org. Chem. 2021, 17, 1374–1384, doi:10.3762/bjoc.17.96

• -allylation sequences, which in turn was assembled from the commercially available 1-indanone (1) utilizing cyclotrimerization and subsequent alkylation reactions. On the other hand, the same compound 6 was generated form triaminotruxene 4 using three-fold Clauson–Kaas reaction which in turn was assembled

• from the same starting material 1 by employing the acid-catalyzed cyclotrimerization, alkylation and subsequent reduction reaction sequences (path B, Scheme 1). In sharp contrast, as can be inspected from path C (Scheme 1) title compound 6 was also synthesized from the tribromotruxene derivative 5 by

• virtue of the Ullmann-type coupling reaction. The tribromotruxene derivative 5 was prepared from the same starting point 1 in three steps (cyclotrimerization, bromination and alkylation) using the literature reported procedures (Scheme 1). Hopefully, these three distinctly different crucial strategies

A comprehensive review of flow chemistry techniques tailored to the flavours and fragrances industries

• Guido Gambacorta,
• James S. Sharley and
• Ian R. Baxendale

Beilstein J. Org. Chem. 2021, 17, 1181–1312, doi:10.3762/bjoc.17.90

• % from benzyl alcohol (16), alongside 50% of the trifluoroacetate 18. Carrying out the same process via a flow-based protocol allowed for the formation of benzaldehyde (17) in 91% yield with only 8% of the accompanying side product 18 [88]. Similarly, a stereoselective alkylation of an Evans’ type

• auxiliary yielded superior results in flow [89]. Alkylation of oxazolidinone 19 with benzyl bromide (20) in batch gave only a combined 31% yield of the benzylated products 21, with a 70% diastereomeric excess (de), accompanied by 10% decomposition to the N-benzyl derivative 22. In flow, however

• quenched aldol outlet stream was directed into a cooled receiver vessel, to which trifluoroacetic anhydride (TFAA) was simultaneously added, creating a net semi-continuous process. Subsequent ammonia-mediated cyclisation of the resultant diene followed by alkylation with the chlorotriazolinone 48 yielded

N-tert-Butanesulfinyl imines in the asymmetric synthesis of nitrogen-containing heterocycles

• Joseane A. Mendes,
• Paulo R. R. Costa,
• Miguel Yus,
• Francisco Foubelo and
• Camilla D. Buarque

Beilstein J. Org. Chem. 2021, 17, 1096–1140, doi:10.3762/bjoc.17.86

• generated, taking place a diastereoselective nucleophilic dichloromethylation of the imine. The addition took place almost exclusively to the Re face of the imine (RS)-14, which is the less sterically hindered in the most stable s-cis conformation (see Scheme 2). The second intramolecular N-alkylation step

• ketone derivative 111, which was not isolated. After removal of the sulfinyl group under acidic conditions, and intramolecular N-alkylation upon treatment with sodium bicarbonate, (−)-pelletierine (112) was formed, and easily isolated as its hydrochloride derivative (Scheme 32) [120]. Compound 112 is a

Synthesis of 10-O-aryl-substituted berberine derivatives by Chan–Evans–Lam coupling and investigation of their DNA-binding properties

• Peter Jonas Wickhorst,
• Mathilda Blachnik,
• Denisa Lagumdzija and
• Heiko Ihmels

Beilstein J. Org. Chem. 2021, 17, 991–1000, doi:10.3762/bjoc.17.81

• strands [30]. Due to their straightforward synthetic accessibility by substitution at the 9-hydroxy functionality of berberrubine (1b), 9-O-substituted berberine derivatives are particularly attractive. But so far, only functionalization at this position by alkylation [23][24][25][26] and nucleophilic

Stereoselective synthesis and transformation of pinane-based 2-amino-1,3-diols

• Ákos Bajtel,
• Mounir Raji,
• Matti Haukka,
• Ferenc Fülöp and
• Zsolt Szakonyi

Beilstein J. Org. Chem. 2021, 17, 983–990, doi:10.3762/bjoc.17.80

• NMR and X-ray spectroscopic techniques. The regioisomeric spiro-oxazolidin-2-one was prepared in a similar way starting from the commercially available (1R)-(−)-myrtenol (10). The reduction or alkaline hydrolysis of the oxazolidines, followed by reductive alkylation resulted in primary and secondary 2

Synthetic reactions driven by electron-donor–acceptor (EDA) complexes

• Zhonglie Yang,
• Yutong Liu,
• Kun Cao,
• Xiaobin Zhang,
• Hezhong Jiang and
• Jiahong Li

Beilstein J. Org. Chem. 2021, 17, 771–799, doi:10.3762/bjoc.17.67

• indole alkylation product 64 by exploiting the EDA complex formed by 3-methylindole (62) and 2,4-dinitrobenzyl bromide (63), with 2,6-dimethylpyridine as additive at room temperature (Scheme 22). The substrates with different substituents at position C2 and C3 of indole have been synthesized smoothly

• that could react with olefin 120 with an electron-withdrawing group to give alkylation product 121 under irradiation with light (Scheme 41). The reaction is compatible with various substrates, including alkenes, secondary alkylpyridinium ions, benzylic pyridinium ions, and primary alkylpyridinium ions

• absorption of EDA complex in the visible-light region. In 2020, Xu and colleagues [39] proposed a visible-light-promoted alkylation reaction using Katritzky salts such as 128 and glycine derivative 127 (or glycine segments in peptides) initiated by an EDA complex. This successfully realized the simple

Synthesis of β-triazolylenones via metal-free desulfonylative alkylation of N-tosyl-1,2,3-triazoles

• Soumyaranjan Pati,
• Renata G. Almeida,
• Eufrânio N. da Silva Júnior and
• Irishi N. N. Namboothiri

Beilstein J. Org. Chem. 2021, 17, 762–770, doi:10.3762/bjoc.17.66

• , MG, Brazil 10.3762/bjoc.17.66 Abstract Desulfonylative alkylation of N-tosyl-1,2,3-triazoles under metal-free conditions leading to β-triazolylenones is reported here. The present study encompasses the synthesis of triazoles with a new substitution pattern in a single step from cyclic 1,3-dicarbonyl

• leading to poor N1/N2 selectivity, for instance, in the direct N-alkylation of triazoles [21][22][23]. Despite these challenges, a number of N1- and N2-selective alkylation methods have been developed employing transition metal catalysts which include Au-catalysed desulfonylative coupling N-tosyl-1,2,3

• functionalization of triazoles under metal-free conditions has been reported. These include the Broensted acid-catalysed N2 alkylation [27], organocatalytic N1 alkylation [28][29], N2-arylation using hypervalent iodine (Scheme 1c) [30], N2-alkylation involving radical intermediate [31], pyridine-N-oxide-mediated N1

Synthesis, structural characterization, and optical properties of benzo[f]naphtho[2,3-b]phosphoindoles

• Mio Matsumura,
• Takahiro Teramoto,
• Masato Kawakubo,
• Masatoshi Kawahata,
• Yuki Murata,
• Kentaro Yamaguchi,
• Masanobu Uchiyama and
• Shuji Yasuike

Beilstein J. Org. Chem. 2021, 17, 671–677, doi:10.3762/bjoc.17.56

• phosphorus center can be easily chemically modified and converted to phosphole derivatives with different electronic properties by reactions such as oxidation, alkylation, and coordination to a Lewis acid [1][2][3][4][5][6][7][8]. Theoretically, pentacyclic benzonaphthophosphindole contains six structural

Amino- and polyaminophthalazin-1(2H)-ones: synthesis, coordination properties, and biological activity

• Zbigniew Malinowski,
• Emilia Fornal,
• Agata Sumara,
• Renata Kontek,
• Karol Bukowski,
• Beata Pasternak,
• Dariusz Sroczyński,
• Joachim Kusz,
• Magdalena Małecka and
• Monika Nowak

Beilstein J. Org. Chem. 2021, 17, 558–568, doi:10.3762/bjoc.17.50

• reported by us [30]. It is known that the alkylation of phthalazinones depends on the reaction conditions and can proceed in two ways involving either the nitrogen or the oxygen atom (lactam–lactim tautomerism). It has been proven that potassium salts of phthalazinones or the bromo derivatives are

• = Me, 85%; 3b R1 = iPr, 84%) were obtained by the direct alkylation of bromophthalazinone 2 with methyl or isopropyl iodide in the presence of K2CO3 in dry acetone as the solvent (conventional heating). In the similar way also the 2-aminoethyl lactams 3c (R1 = CH2CH2NMe2) and 3d (R1 = CH2CH2(morpholin

• In conclusion, we have demonstrated an efficient synthesis of 2-substituted (alkyl, aminoalkyl) 4-aminophthalazinones 5 and 6 via the direct bromination of phthalazin-1(2H)-one (1) with potassium tribromide, followed by the alkylation of 4-bromophthalazinone 2 with methyl iodide, isopropyl iodide or

Synthetic strategies of phosphonodepsipeptides

• Jiaxi Xu

Beilstein J. Org. Chem. 2021, 17, 461–484, doi:10.3762/bjoc.17.41

• reviewed, including the phosphonylation of hydroxy esters with phosphonochloridates, the condensation of phosphonic monoesters and hydroxy esters, the alkylation of phosphonic monoesters with 1-(alkoxycarbonyl)alkyl halides or sulfonates, multicomponent condensation of amides, aldehydes, and

• phosphonodepsipeptides with C-1-hydroxyalkylphosphonic acids. Keywords: alkylation; mimetic; multicomponent condensation; peptide; phosphonopeptide; phosphonodepsipeptide; phosphonylation; Introduction Both, phosphonopeptides and phosphonodepsipeptides are phosphorus analogues of peptides [1][2][3][4][5]. The

• ) produced the desired product 171 in 62% yield in the reaction. However, aliphatic aldehydes did not work (Scheme 32) [52]. Synthesis of phosphonodepsipeptides via the alkylation of phosphonic monoesters with 1-(alkoxycarbonyl)alkyl halides or sulfonates The alkylation of N-protected 1-aminoalkylphosphonic

1,2,3-Triazoles as leaving groups: S_NAr reactions of 2,6-bistriazolylpurines with O- and C-nucleophiles

• Dace Cīrule,
• Irina Novosjolova,
• Ērika Bizdēna and
• Māris Turks

Beilstein J. Org. Chem. 2021, 17, 410–419, doi:10.3762/bjoc.17.37

• -halopurines [41]. O-Alkylation of guanosine and inosine with Cu(I)-stabilized carbenes derived form α-diazocarbonyl compounds is also known [42]. Alkylation of 6-oxopurine derivatives under Mitsunobu conditions which usually proceeds with O-regioselectivity are mostly described for guanine derivatives [43][44

• of purine [73][74][75][76] or alkylation of inosine or guanosine derivatives (Ib→II, Scheme 1) [30][36]. In the next step, azide can be introduced either by a second SNAr reaction on the C2-halo derivative or by diazotization/azidation at C2. Then, the Cu(I)-catalyzed azide–alkyne cycloaddition

Unexpected rearrangements and a novel synthesis of 1,1-dichloro-1-alkenones from 1,1,1-trifluoroalkanones with aluminium trichloride

• Beatrice Lansbergen,
• Catherine S. Meister and
• Michael C. McLeod

Beilstein J. Org. Chem. 2021, 17, 404–409, doi:10.3762/bjoc.17.36

• trichloride; dichloroalkenes; Friedel–Crafts alkylation; rearrangement; trifluoroalkanes; Introduction 1,1-Dichloro-1-alkenes are valuable synthetic intermediates and have been employed in Pd-mediated cross couplings of one or both chlorine atoms [1][2][3][4][5][6][7], carbonylation reactions [8], and C–H

• ) equivalents of AlCl3, a further two products were obtained, whose structures were elucidated as the 8,9-dihydrobenzo[7]annulen-9-ones 9 and 10 (Scheme 4). Presumably, these bicyclic compounds arise via an intramolecular Friedel–Crafts alkylation of 6b, promoted by the ortho/para-directing nature of the

Mesoionic tetrazolium-5-aminides: Synthesis, molecular and crystal structures, UV–vis spectra, and DFT calculations

• Vladislav A. Budevich,
• Sergei V. Voitekhovich,
• Alexander V. Zuraev,
• Vadim E. Matulis,
• Vitaly E. Matulis,
• Alexander S. Lyakhov,
• Ludmila S. Ivashkevich and
• Oleg A. Ivashkevich

Beilstein J. Org. Chem. 2021, 17, 385–395, doi:10.3762/bjoc.17.34

• -containing alkylation reagents [27]. Very recently, this aminide was found to be a suitable ligand for manganese complexes [28] and used as the agent for the preparation of salts with high energy density [29]. Also, it is worth noting that today only a few examples of mesoionic tetrazole aminide X-ray

• tetrazolium-5-aminide allows to displace halo- and methylsulfonyl groups, whereas 5-aminotetrazoles do not react under analogous conditions. So, we prepared the bistetrazolium salt 9 by the alkylation of aminide 8a with 1,2-dibromoethane (Scheme 2). The obtained salt 9 was subjected to deprotonation to give

• energy of S0→S1 transition increases, and a blue shift is observed in polar media. Conclusion Mesoionic tetrazolium-5-aminides can be easily prepared by the alkylation of readily available 5-aminotetrazole and its N-alkyl derivatives in a t-BuOH/HClO4 system followed by the treatment of the tetrazolium

Coupling biocatalysis with high-energy flow reactions for the synthesis of carbamates and β-amino acid derivatives

• Alexander Leslie,
• Thomas S. Moody,
• Megan Smyth,
• Scott Wharry and
• Marcus Baumann

Beilstein J. Org. Chem. 2021, 17, 379–384, doi:10.3762/bjoc.17.33

• innovative approach (85% yield, for details see [21]). To further exploit the value of this continuous flow approach the possibility of converting selected carbamate products into derivatives of β-amino acids (e.g., 8) was evaluated. Although this may be achieved by a conventional alkylation of the carbamate

CF₃-substituted carbocations: underexploited intermediates with great potential in modern synthetic chemistry

• Anthony J. Fernandes,
• Armen Panossian,
• Bastien Michelet,
• Agnès Martin-Mingot,
• Frédéric R. Leroux and
• Sébastien Thibaudeau

Beilstein J. Org. Chem. 2021, 17, 343–378, doi:10.3762/bjoc.17.32

• ethers 41b upon the reaction in a dichloromethane solution of sulfuric acid or triflic acid [60][61]. The authors also reported that indenes 42 could undergo a subsequent Friedel–Crafts alkylation when 41b was reacted in the presence of an external aromatic partner Ar’H in pure triflic acid. Thus, a

Regioselective chemoenzymatic syntheses of ferulate conjugates as chromogenic substrates for feruloyl esterases

• Olga Gherbovet,
• Fernando Ferreira,
• Apolline Clément,
• Mélanie Ragon,
• Julien Durand,
• Sophie Bozonnet,
• Michael J. O'Donohue and
• Régis Fauré

Beilstein J. Org. Chem. 2021, 17, 325–333, doi:10.3762/bjoc.17.30

• for esterases [23][38]. The alkylation of 4NTC with homoallylic bromide under basic conditions gave a mixture of mono- and dialkylated 4NTC derivatives, with 10 (38%) predominating because of the preferential formation of the phenolate at the para-position (relative to the nitro group) [39]. Osmium

1,2,3-Triazoles as leaving groups in S_NAr–Arbuzov reactions: synthesis of C6-phosphonated purine derivatives

• Kārlis-Ēriks Kriķis,
• Irina Novosjolova,
• Anatoly Mishnev and
• Māris Turks

Beilstein J. Org. Chem. 2021, 17, 193–202, doi:10.3762/bjoc.17.19

• (OEt)3 Next, we switched to pathway B (Scheme 2) and prepared 2,6-diazidopurine derivative 5 from 2,6-dichloropurine (11) via a Mitsunobu alkylation and SNAr reaction with NaN3 (Scheme 5) [22]. 2,6-Bistriazolylpurine derivatives 6a–i were obtained in CuAAC reactions with various alkynes in 35–76% yield

Progress in the total synthesis of inthomycins

• Bidyut Kumar Senapati

Beilstein J. Org. Chem. 2021, 17, 58–82, doi:10.3762/bjoc.17.7

• evidence [60]. The synthetic route was designed in such a way that intercept both Ryu’s intermediate (+)-69 [50] and Hatakeyama’s intermediate (+)-82b [22] (Scheme 12 and Scheme 13). In this approach, the asymmetric alkylation of 96 with alkyne 95 under Carreira’s conditions [61][62][63] afforded (−)-98 in