Evaluation of quantum dot conjugated antibodies for immunofluorescent labelling of cellular targets

• Jennifer E. Francis,
• David Mason and
• Raphaël Lévy

Beilstein J. Nanotechnol. 2017, 8, 1238–1249, doi:10.3762/bjnano.8.125

• only intracellular, but contained within the nucleus, which is crowded with deoxyribonucleic acid (DNA) and proteins. Under conditions identical to the previous experiments, the labelling of SC35 with the Qdot 625-Ab was non-specific, diffuse, and predominately cytosolic (Figure 5). The intensity

• ), following the manufacturer's protocol (3:1 transfection reagent/DNA plasmid). Site click conjugation of Qdot625 to anti-GFP Following the manufacturer's protocol, a commercial site-click Qdot 625 antibody conjugation kit (Thermo Fisher Scientific, UK) was used to conjugate a primary mouse (clones 7.1 and

Recombinant DNA technology and click chemistry: a powerful combination for generating a hybrid elastin-like-statherin hydrogel to control calcium phosphate mineralization

• Mohamed Hamed Misbah,
• Mercedes Santos,
• Luis Quintanilla,
• Christina Günter,
• Matilde Alonso,
• Andreas Taubert and
• José Carlos Rodríguez-Cabello

Beilstein J. Nanotechnol. 2017, 8, 772–783, doi:10.3762/bjnano.8.80

• advanced multifunctional materials. The generation of such multifunctional hybrid materials depends on the properties of their counterparts and the way in which they are assembled. The success of this assembly depends on the different approaches used, such as recombinant DNA technology and click chemistry

• . Recombinant DNA technology [22][23] and click chemistry [24][25][26] are two such approaches. Thus, recombinant DNA technology offers advantages such as reduction in production costs, a time reduction in large-scale bioproduction, close control of the biomacromolecules product sequence (size and uniformity

• post-synthesis reactions can be performed with the ELRs. As far as polymer bioconjugation is concerned, the thermoresponsivity of ELRs could be exploited to tune the bioactivity of biological components [13][31][32][33][34]. According to this idea, the use of recombinant DNA technology [23][35] allows

Selective detection of Mg²⁺ ions via enhanced fluorescence emission using Au–DNA nanocomposites

• Tanushree Basu,
• Khyati Rana,
• Niranjan Das and
• Bonamali Pal

Beilstein J. Nanotechnol. 2017, 8, 762–771, doi:10.3762/bjnano.8.79

• Tanushree Basu Khyati Rana Niranjan Das Bonamali Pal School of Chemistry and Biochemistry, Thapar University, Patiala 147004, Punjab, India Department of Biotechnology, Thapar University, Patiala 147004, Punjab, India 10.3762/bjnano.8.79 Abstract The biophysical properties of DNA-modified Au

• nanoparticles (AuNPs) have attracted a great deal of research interest for various applications in biosensing. AuNPs have strong binding capability to the phosphate and sugar groups in DNA, rendering unique physicochemical properties for detection of metal ions. The formation of Au–DNA nanocomposites is evident

• from the observed changes in the optical absorption, plasmon band, zeta potential, DLS particle size distribution, as well as TEM and AFM surface morphology analysis. Circular dichroism studies also revealed that DNA-functionalized AuNP binding caused a conformational change in the DNA structure. Due

Phospholipid arrays on porous polymer coatings generated by micro-contact spotting

• Sylwia Sekula-Neuner,
• Monica de Freitas,
• Lea-Marie Tröster,
• Tobias Jochum,
• Pavel A. Levkin,
• Michael Hirtz and
• Harald Fuchs

Beilstein J. Nanotechnol. 2017, 8, 715–722, doi:10.3762/bjnano.8.75

• variety of bio-applications. Keywords: microcontact cantilever spotting; phospholipids; polymeric porous support; polymethacrylate; Introduction Starting with the creation of high density peptide microarrays in the 1990s [1] the development of arrays with DNA molecules and antibodies has produced a

Synthesis of graphene–transition metal oxide hybrid nanoparticles and their application in various fields

• Arpita Jana,
• Elke Scheer and
• Sebastian Polarz

Beilstein J. Nanotechnol. 2017, 8, 688–714, doi:10.3762/bjnano.8.74

• . The NiO–graphene hybrids show good sensing capability for the reducing gases such as H2, NH3, H2S, NO2 [204]. In another work graphene nanosheet–NiO hybrids in combination with DNA are used as the high-performance nonenzymatic glucose sensors [205]. Recently graphene-wrapped NiO hybrids were prepared

Uptake of the proteins HTRA1 and HTRA2 by cells mediated by calcium phosphate nanoparticles

• Olga Rotan,
• Katharina N. Severin,
• Simon Pöpsel,
• Alexander Peetsch,
• Melisa Merdanovic,
• Michael Ehrmann and
• Matthias Epple

Beilstein J. Nanotechnol. 2017, 8, 381–393, doi:10.3762/bjnano.8.40

• ]. For instance, nucleic acids like DNA [10][11][12][13], siRNA [14][15][16][17] and µRNA [18] have been successfully introduced to perform transfection, gene silencing, prophylactic and therapeutic vaccination [19][20][21]. All kinds of synthetic molecules and biomolecules can be transported across the

Nanoscale isoindigo-carriers: self-assembly and tunable properties

• Tatiana N. Pashirova,
• Andrei V. Bogdanov,
• Lenar I. Musin,
• Julia K. Voronina,
• Irek R. Nizameev,
• Marsil K. Kadirov,
• Vladimir F. Mironov,
• Lucia Ya. Zakharova,
• Shamil K. Latypov and
• Oleg G. Sinyashin

Beilstein J. Nanotechnol. 2017, 8, 313–324, doi:10.3762/bjnano.8.34

• the treatment of leukaemia [28][29][30][31][32]. (iii) Another advantage of isatin and isoindigo derivatives is that they display binding properties of biomacromolecules (DNA, proteins and enzymes). It is noteworthy that isatin derivatives interact with DNA via an intercalating mechanism [12][13][33

Streptavidin-coated gold nanoparticles: critical role of oligonucleotides on stability and fractal aggregation

• Roberta D'Agata,
• Pasquale Palladino and
• Giuseppe Spoto

Beilstein J. Nanotechnol. 2017, 8, 1–11, doi:10.3762/bjnano.8.1

• thorough understanding of the fundamental properties of bioconjugated AuNPs is of great importance for the design of highly sensitive and reliable functionalized AuNP-based assays. Keywords: biosensors; DNA; gold nanoparticles; nanoparticles aggregation; plasmonics; streptavidin; Introduction Gold

• enhanced sensitivity enables the detection of point mutations in non-amplified human genomic DNA with attomolar sensitivity [13], thus offering an excellent cost-effective alternative to time consuming and prone to sample contamination nucleic acid amplification protocols [14]. In this context, the

• interaction of SA-conjugated AuNPs with large DNA fragments immobilized on the surface of SPRI sensors has been hypothesized to induce an AuNP aggregation process which could contribute to further enhance the sensitivity of nanoparticle-enhanced SPRI DNA detection assays [12]. Such hypothesis has motivated

A novel electrochemical nanobiosensor for the ultrasensitive and specific detection of femtomolar-level gastric cancer biomarker miRNA-106a

• Maryam Daneshpour,
• Kobra Omidfar and
• Hossein Ghanbarian

Beilstein J. Nanotechnol. 2016, 7, 2023–2036, doi:10.3762/bjnano.7.193

• could be used for early detection of GC and also for assessing the efficiency of therapies. Experimental Reagents and chemicals Synthetic ss-DNA probes and miRNA sequences employed in this study were purchased from Bioneer Corporation (South Korea) and the sequences are listed in Table S1. Additionally

Controlled supramolecular structure of guanosine monophosphate in the interlayer space of layered double hydroxide

• Gyeong-Hyeon Gwak,
• Istvan Kocsis,
• Yves-Marie Legrand,
• Mihail Barboiu and
• Jae-Min Oh

Beilstein J. Nanotechnol. 2016, 7, 1928–1935, doi:10.3762/bjnano.7.184

• as a single molecular arrangement (Figure 3a). Considering that double-helix DNA denatures to single-stranded DNA above 70 °C through hydrogen bonding breakage [17], the reaction temperature above 60 °C in this study might be sufficient to disrupt hydrogen bonding between GMPs. It was interesting to

Low temperature co-fired ceramic packaging of CMOS capacitive sensor chip towards cell viability monitoring

• Niina Halonen,
• Joni Kilpijärvi,
• Maciej Sobocinski,
• Timir Datta-Chaudhuri,
• Antti Hassinen,
• Someshekar B. Prakash,
• Peter Möller,
• Pamela Abshire,
• Sakari Kellokumpu and
• Anita Lloyd Spetz

Beilstein J. Nanotechnol. 2016, 7, 1871–1877, doi:10.3762/bjnano.7.179

• attachment of the cells on the chip, as well as LTCC, was monitored by fixing the cells with 4% paraformaldehyde 24 h after inoculation and staining the cells with a DNA binding dye (Hoechst, 33342) and anti-α-tubulin antibody. Based on the cell morphology shown in Figure 5a–f, the cells attached normally

• cells grow on top of the chip. (d–f) The cells grow on top of LTCC. In (a) and (d), the blue color indicates the cell nuclei stained with a DNA binding dye, Hoechst 33342. In (b) and (e), immunofluorescence staining was performed with anti-α-tubulin antibody and Alexa 488 secondary antibody. The green

Chitosan-based nanoparticles for improved anticancer efficacy and bioavailability of mifepristone

• Huijuan Zhang,
• Fuqiang Wu,
• Yazhen Li,
• Xiping Yang,
• Jiamei Huang,
• Tingting Lv,
• Yingying Zhang,
• Jianzhong Chen,
• Haijun Chen,
• Yu Gao,
• Guannan Liu and
• Lee Jia

Beilstein J. Nanotechnol. 2016, 7, 1861–1870, doi:10.3762/bjnano.7.178

• reactive amino side groups, chitosan could be made available via chemical modifications or ionic interactions [14]. Chitosan-bearing protonated amino groups could interact with a wide variety of natural or synthetic anionic species, such as negatively charged proteins, DNA [15][16][17][18][19], and some

Monolayer graphene/SiC Schottky barrier diodes with improved barrier height uniformity as a sensing platform for the detection of heavy metals

• Ivan Shtepliuk,
• Jens Eriksson,
• Volodymyr Khranovskyy,
• Tihomir Iakimov,
• Anita Lloyd Spetz and
• Rositsa Yakimova

Beilstein J. Nanotechnol. 2016, 7, 1800–1814, doi:10.3762/bjnano.7.173

• with functionalized gold nanoparticles and DNA for detecting mercury ions in aqueous solution was also demonstrated [19][22]. It has to be pointed out that graphene loses part of its exotic properties after oxidation, thereby degrading its intrinsically high sensing capability. Furthermore, according

False positives and false negatives measure less than 0.001% in labeling ssDNA with osmium tetroxide 2,2’-bipyridine

• Anastassia Kanavarioti

Beilstein J. Nanotechnol. 2016, 7, 1434–1446, doi:10.3762/bjnano.7.135

• Anastassia Kanavarioti Yenos Analytical LLC, El Dorado Hills, CA, USA 10.3762/bjnano.7.135 Abstract Osmium tetroxide 2,2’-bipyridine (OsBp) is known to react with pyrimidines in ssDNA and preferentially label deoxythymine (T) over deoxycytosine (C). The product, osmylated DNA, was proposed as a

• surrogate for nanopore-based DNA sequencing due to OsBp’s “perfect” label attributes. Osmylated deoxyoligos translocate unassisted and measurably slow via sub-2 nm SiN solid-state nanopores, as well as via the alpha-hemolysin (α-HL) pore. Both nanopores discriminate clearly between osmylated and intact

• properties of the degradation products via nanopore translocation can be evaluated to assure base calling quality in a DNA sequencing effort. Keywords: α-hemolysin; capillary electrophoresis; DNA sequencing; high-performance liquid chromatography; nanopores; osmium tetroxide bipyridine; osmylated oligos

Straightforward and robust synthesis of monodisperse surface-functionalized gold nanoclusters

• Silvia Varela-Aramburu,
• Richard Wirth,
• Chian-Hui Lai,
• Guillermo Orts-Gil and
• Peter H. Seeberger

Beilstein J. Nanotechnol. 2016, 7, 1278–1283, doi:10.3762/bjnano.7.118

• carbohydrates [13], proteins [14], antibodies [15] and DNA [16] are commonly used as multivalent materials for biological studies. Gold nanoparticles have been used in vivo as radiotracers [15][17], for targeted delivery [18] and, when functionalized with carboxylic acids, inhibit β-amyloid fibril growth

Tunable longitudinal modes in extended silver nanoparticle assemblies

• Serene S. Bayram,
• Klas Lindfors and
• Amy Szuchmacher Blum

Beilstein J. Nanotechnol. 2016, 7, 1219–1228, doi:10.3762/bjnano.7.113

• [5], DNA [6], and proteins [7], including virus coat proteins [8][9] as well as rigid templates such as carbon nanotubes [10] have been extensively implemented and programmed for desired assemblies. In addition, assisted organization and alignment of nanoparticles via external directing magnetic [11

• for larger-scale synthesis due to technical limitations. Other attempts such as assembling on templates of λ-DNA networks have not demonstrated the ability to generate discrete plasmonic modes, and, since they are substrate-based, lack the versatility of tuning the plasmonic bands [24]. Surfactant

• approximation (DDA) method [45]. A similar approach as the method used here has been earlier successfully used to model DNA-assembled nanospheres [46]. Extinction spectra of AgNPs modified by varying ratios of ligands: A) cysteamine, B) DTT and C) cysteine. Legend: r = number of ligand molecules/AgNP. Insets

Reasons and remedies for the agglomeration of multilayered graphene and carbon nanotubes in polymers

• Rasheed Atif and
• Fawad Inam

Beilstein J. Nanotechnol. 2016, 7, 1174–1196, doi:10.3762/bjnano.7.109

• osteoblasts (bone-forming cells) and neurons, and found to be effective nano-carriers for several biomolecules such as proteins, DNA and carbohydrates [4]. Recently, MLG/CNT–polymer nanocomposites have been explored as scaffolds for cell growth and load-bearing implant materials for replacing defective human

High antiviral effect of TiO₂·PL–DNA nanocomposites targeted to conservative regions of (−)RNA and (+)RNA of influenza A virus in cell culture

• Asya S. Levina,
• Marina N. Repkova,
• Elena V. Bessudnova,
• Ekaterina I. Filippova,
• Natalia A. Mazurkova and
• Valentina F. Zarytova

Beilstein J. Nanotechnol. 2016, 7, 1166–1173, doi:10.3762/bjnano.7.108

• TiO2·PL–DNA nanocomposite consisting of titanium dioxide nanoparticles and polylysine (PL)-containing oligonucleotides. Results: The TiO2·PL–DNA nanocomposites bearing the DNA fragments targeted to different conservative regions of (−)RNA and (+)RNA of segment 5 of influenza A virus (IAV) were studied

• for their antiviral activity in MDCK cells infected with the H1N1, H5N1, and H3N2 virus subtypes. Within the negative strand of each of the studied strains, the efficiency of DNA fragments increased in the direction of its 3’-end. Thus, the DNA fragment aimed at the 3’-noncoding region of (−)RNA was

• the most efficient and inhibited the reproduction of different IAV subtypes by 3–4 orders of magnitude. Although to a lesser extent, the DNA fragments targeted at the AUG region of (+)RNA and the corresponding region of (−)RNA were also active. For all studied viral subtypes, the nanocomposites

Multiwalled carbon nanotube hybrids as MRI contrast agents

• Nikodem Kuźnik and
• Mateusz M. Tomczyk

Beilstein J. Nanotechnol. 2016, 7, 1086–1103, doi:10.3762/bjnano.7.102

• been applied in MWCNT CA candidates, an example of SWCNT separation in the magnetic field was described by Choi [6]. Nanotubes with SPIO anchored at one of the ends were combined with DNA chains. Then the dispersion of hybrids was placed over a 0.5 T magnetic array for two days. The hybrids arranged

Dielectrophoresis of gold nanoparticles conjugated to DNA origami structures

• Anja Henning-Knechtel,
• Matthew Wiens,
• Mathias Lakatos,
• Andreas Heerwig,
• Frieder Ostermaier,
• Nora Haufe and
• Michael Mertig

Beilstein J. Nanotechnol. 2016, 7, 948–956, doi:10.3762/bjnano.7.87

• Chemistry, University of Alberta, Edmonton, T6G2G2, Canada Kurt-Schwabe-Institut für Mess- und Sensortechnik Meinsberg e.V., 04736 Waldheim, Germany 10.3762/bjnano.7.87 Abstract DNA nanostructures are promising construction materials to bridge the gap between self-assembly of functional molecules and

• conventional top-down fabrication methods in nanotechnology. Their positioning onto specific locations of a microstructured substrate is an important task towards this aim. Here we study manipulation and positioning of pristine and of gold nanoparticle-conjugated tubular DNA origami structures using ac

• dielectrophoresis. The dielectrophoretic behavior was investigated employing fluorescence microscopy. For the pristine origami, a significant dielectrophoretic response was found to take place in the megahertz range, whereas, due to the higher polarizability of the metallic nanoparticles, the nanoparticle/DNA

Improved biocompatibility and efficient labeling of neural stem cells with poly(L-lysine)-coated maghemite nanoparticles

• Igor M. Pongrac,
• Marina Dobrivojević,
• Lada Brkić Ahmed,
• Michal Babič,
• Miroslav Šlouf,
• Daniel Horák and
• Srećko Gajović

Beilstein J. Nanotechnol. 2016, 7, 926–936, doi:10.3762/bjnano.7.84

• electrostatic interaction between negatively charged ions of the cell membrane and the surface of the culture plate. Due to the presence of NH2 groups, which promote cell adhesion, PLL is as well used as a non-viral transfection agent for gene delivery and DNA complexation [20]. Our previous studies showed that

Reconstitution of the membrane protein OmpF into biomimetic block copolymer–phospholipid hybrid membranes

• Matthias Bieligmeyer,
• Franjo Artukovic,
• Stephan Nussberger,
• Thomas Hirth,
• Thomas Schiestel and
• Michaela Müller

Beilstein J. Nanotechnol. 2016, 7, 881–892, doi:10.3762/bjnano.7.80

• lipid membranes with high fidelity and selectivity. In the field of biotechnology, they are particularly attractive for single-molecule DNA sequencing [1][2][3][4][5] and stochastic sensing of ions and macromolecules [6][7][8][9][10]. The well-defined dimensions of the protein pores furthermore offer a

Hierarchical coassembly of DNA–triptycene hybrid molecular building blocks and zinc protoporphyrin IX

• Rina Kumari,
• Sumit Singh,
• Mohan Monisha,
• Sourav Bhowmick,
• Anindya Roy,
• Neeladri Das and
• Prolay Das

Beilstein J. Nanotechnol. 2016, 7, 697–707, doi:10.3762/bjnano.7.62

• composite DNA nanostructures by the self-assembly of complementary symmetrical 2,6,14-triptycenetripropiolic acid (TPA)–DNA building blocks and zinc protoporphyrin IX (Zn PpIX). DNA–organic molecule scaffolds for the composite DNA nanostructure were constructed through covalent conjugation of TPA with 5

• ′-C12-amine-terminated modified single strand DNA (ssDNA) and its complementary strand. The repeated covalent conjugation of TPA with DNA was confirmed by using denaturing polyacrylamide gel electrophoresis (PAGE), reverse-phase high-performance liquid chromatography (RP-HPLC) and matrix-assisted laser

• desorption/ionization time-of-flight (MALDI-TOF). The biologically relevant photosensitizer Zn PpIX was used to direct the hybridization-mediated self-assembly of DNA–TPA molecular building blocks as well as a model guest molecule within the DNA–TPA supramolecular self-assembly. The formation of fiber-like

Unraveling the neurotoxicity of titanium dioxide nanoparticles: focusing on molecular mechanisms

• Bin Song,
• Yanli Zhang,
• Jia Liu,
• Xiaoli Feng,
• Ting Zhou and
• Longquan Shao

Beilstein J. Nanotechnol. 2016, 7, 645–654, doi:10.3762/bjnano.7.57

• signaling pathways, dysregulated neurotransmitters and synaptic plasticity have also been shown to contribute to neurotoxicity of TiO2 NPs. Recently, studies on autophagy and DNA methylation have shed some light on possible mechanisms of nanotoxicity. Therefore, we offer a new perspective that autophagy and

• DNA methylation could contribute to neurotoxicity of TiO2 NPs. Undoubtedly, more studies are needed to test this idea in the future. In short, to fully understand the health threats posed by TiO2 NPs and to improve the bio-safety of TiO2 NPs-based products, the neurotoxicity of TiO2 NPs must be

• investigated comprehensively through studying every possible molecular mechanism. Keywords: autophagy; brain; DNA methylation; neurotoxicity; titanium dioxide nanoparticles; Introduction Titanium dioxide nanoparticles, smaller than 1 μm in at least one dimension, possess specific physico-chemical

Novel roles for well-known players: from tobacco mosaic virus pests to enzymatically active assemblies

• Claudia Koch,
• Fabian J. Eber,
• Carlos Azucena,
• Alexander Förste,
• Stefan Walheim,
• Thomas Schimmel,
• Alexander M. Bittner,
• Holger Jeske,
• Hartmut Gliemann,
• Sabine Eiben,
• Fania C. Geiger and
• Christina Wege

Beilstein J. Nanotechnol. 2016, 7, 613–629, doi:10.3762/bjnano.7.54

• viruses consist of genetic DNA or RNA material surrounded by a protein coat (capsid), and optionally a lipid envelope. Since virus genomes do not encode all biochemical mechanisms necessary for their own replication and spread, they exploit the genetic repertoire of the infected host cells, which are re

• the fabrication of microfluidic devices by master-replication techniques, was already shown to allow a site-specific bottom-up integration of TMV carrier sticks [60]. This was achieved via isothiocyanate- (ITC-) based coupling of single-stranded (ss) DNA anchors, subsequent trapping of the 3'-ends of

• might enable a fine-tuned adjustment of rod orientations in the desired dimensions (Figure 8B): Substrates coated with DNA anchors were equipped with a nano-perforated metal-organic layer via metal polymer blend lithography [178][179], and its topographical contrast amplified by a metal-organic build-up