Using gold nanoparticles to detect single-nucleotide polymorphisms: toward liquid biopsy

• María Sanromán Iglesias and
• Marek Grzelczak

Beilstein J. Nanotechnol. 2020, 11, 263–284, doi:10.3762/bjnano.11.20

• ], microRNA, RNA [32] and proteins [33] (Figure 1). For the discussion here, the detection of circulating cell-free DNA is relevant. While all types of cells (tumor and nonmalignant) release cfDNA into the extracellular system [34], the circulating tumor DNA (ctDNA) is released uniquely by tumor cells

• . Translocations or inversions within a gene that result in fusion genes and associated fusion proteins. Among these four gene alterations, the SNPs in ctDNA are known as the major contributors to the genetic variations, representing more than 80% of all known polymorphisms at a frequency of around 1 every 1000

• nanoparticles, in which interparticle forces [139], mutual orientation and interparticle distances are well controlled by chemical stimuli. Finally, we foresee that the detection of genetic mutations by plasmonic nanoparticles will be strongly enhanced by a complementary detection of disease-related proteins

Rational design of block copolymer self-assemblies in photodynamic therapy

• Maxime Demazeau,
• Laure Gibot,
• Anne-Françoise Mingotaud,
• Patricia Vicendo,
• Clément Roux and
• Barbara Lonetti

Beilstein J. Nanotechnol. 2020, 11, 180–212, doi:10.3762/bjnano.11.15

• , regarding the block copolymers used as nanovectors for the delivery of the photosensitizer. In particular, we describe the chemical nature and structure of the block copolymers showing a very large range of existing systems, spanning from natural polymers such as proteins or polysaccharides to synthetic

• proteins and adhesion to cells [108][109]. A hydrophobic cargo, well within the hydrophobic core is thus protected from hydrolysis and enzymatic degradation. Besides, PEO prevents the recognition from the mononuclear phagocyte system and preliminary clearance from the bloodstream is reduced. Although PEO

• interactions in the biological medium. The proteins, lipids, extracellular matrix components are all ingredients that can transform or dissociate the vector, leading to the release of the PS. Increasing the stability of the vector can therefore be important, but some commercialized systems such as Abraxane

Molecular architectonics of DNA for functional nanoarchitectures

• Debasis Ghosh,
• Lakshmi P. Datta and
• Thimmaiah Govindaraju

Beilstein J. Nanotechnol. 2020, 11, 124–140, doi:10.3762/bjnano.11.11

• , DNA origami is anticipated to have possible applications in the fields of biosciences, the design of protein scaffolds, and plasmonics [51][52][53]. Shih and co-workers utilized DNA origami nanotechnology for the structural determination of plasma membrane proteins [54]. They reported the construction

• of detergent-resistant 0.8 µm-long liquid crystalline DNA nanotubes organized from a 7.3 kb scaffold strand and >170 short oligonucleotide-long staple strands. The liquid crystalline matrices of six helix DNA origami bundles induced a weak alignment of proteins within the plasma membrane. The

• solubilization and weak alignment of proteins within plasma membrane are crucial to measure the residual dipolar couplings (RDCs), and the RDCs are crucial to obtain NMR structural information on membrane-bound proteins. As reported, DNA origami-based liquid crystalline media can overcome detergent-related

Internalization mechanisms of cell-penetrating peptides

• Ivana Ruseska and
• Andreas Zimmer

Beilstein J. Nanotechnol. 2020, 11, 101–123, doi:10.3762/bjnano.11.10

• Ivana Ruseska Andreas Zimmer Institute of Pharmaceutical Sciences, Department of Pharmaceutical Technology and Biopharmacy, University of Graz, 8010 Graz, Austria 10.3762/bjnano.11.10 Abstract In today’s modern era of medicine, macromolecular compounds such as proteins, peptides and nucleic acids

• a major breakthrough for the transport of macromolecules. They have been shown to successfully deliver proteins, peptides, siRNAs and pDNA in different cell types. In general, CPPs are basic peptides with a positive charge at physiological pH. They are able to translocate membranes and gain entry to

• “canonical” rules defining what a drug molecule should be like, has been accelerated these days. One part of this new group are proteins, peptides and nucleic acids, all developed with one thing in mind – bypassing the limitations of conventional therapeutics [3]. The novelty of these macromolecular

A review of demodulation techniques for multifrequency atomic force microscopy

• David M. Harcombe,
• Michael G. Ruppert and
• Andrew J. Fleming

Beilstein J. Nanotechnol. 2020, 11, 76–91, doi:10.3762/bjnano.11.8

• theoretical foundations for determining secondary sample properties such as Young’s modulus [13][22]. Applications include the imaging of secondary properties of proteins [23] and polymers [24]. Intermodulation AFM actively drives the cantilever slightly below and above resonance with a two-tone drive

Fully amino acid-based hydrogel as potential scaffold for cell culturing and drug delivery

• Dávid Juriga,
• Evelin Sipos,
• Orsolya Hegedűs,
• Gábor Varga,
• Miklós Zrínyi,
• Krisztina S. Nagy and
• Angéla Jedlovszky-Hajdú

Beilstein J. Nanotechnol. 2019, 10, 2579–2593, doi:10.3762/bjnano.10.249

• , Nagyvarad square 4, Budapest, Hungary 10.3762/bjnano.10.249 Abstract Polymer hydrogels are ideal scaffolds for both tissue engineering and drug delivery. A great advantage of poly(amino acid)-based hydrogels is their high similarity to natural proteins. However, their expensive and complicated synthesis

Long-term stability and scale-up of noncovalently bound gold nanoparticle-siRNA suspensions

• Anna V. Epanchintseva,
• Julia E. Poletaeva,
• Dmitrii V. Pyshnyi,
• Elena I. Ryabchikova and
• Inna A. Pyshnaya

Beilstein J. Nanotechnol. 2019, 10, 2568–2578, doi:10.3762/bjnano.10.248

• final nanostructures with a biomolecular shell seems quite complex because of the high lability of many proteins, polymers, and lipids. The synthesis and storage of significant quantities of core materials for multi-level nanoconstructions could be an approach to solving this problem. Therefore, we

Bombesin receptor-targeted liposomes for enhanced delivery to lung cancer cells

• Mohammad J. Akbar,
• Pâmela C. Lukasewicz Ferreira,
• Melania Giorgetti,
• Leanne Stokes and
• Christopher J. Morris

Beilstein J. Nanotechnol. 2019, 10, 2553–2562, doi:10.3762/bjnano.10.246

• , leading to accumulation of nanocarriers in the tumour. A diversity of targeting ligands has been explored, including antibodies, proteins, peptides and aptamers. Targeted nanoparticles such as HER2-targeted MM-302 [14], transferrin receptor-targeted CALAA-01 [15], and prostate-specific membrane antigen

• polydisperse proteins of different sizes [27]. Indeed, the surface properties of various nanoparticles have been shown to change dramatically in the presence of plasma or serum [28] with the establishment of an adsorbed protein corona around the nanoparticle. It is now widely accepted that the particle protein

Evaluation of click chemistry microarrays for immunosensing of alpha-fetoprotein (AFP)

• Seyed Mohammad Mahdi Dadfar,
• Sylwia Sekula-Neuner,
• Vanessa Trouillet,
• Hui-Yu Liu,
• Ravi Kumar,
• Annie K. Powell and
• Michael Hirtz

Beilstein J. Nanotechnol. 2019, 10, 2505–2515, doi:10.3762/bjnano.10.241

• our setup. Negative control samples (no AFP present) yielded no fluorescence signal (Supporting Information File 1, Figure S2a). Furthermore, unspecific binding of non-target proteins is assumed to be low as revealed by a control experiment with fluorescently labeled streptavidin as model protein

• reagents are the simplest and most frequently used reagents for labeling proteins like antibodies. Within a pH range of 7–9, succinimidyl-ester reacts efficiently with the primary amino groups (–NH2) in the side chain of the lysine (K) residues of proteins to form stable amide bonds. This reaction results

Small protein sequences can induce cellular uptake of complex nanohybrids

• Jan-Philip Merkl,
• Malak Safi,
• Christian Schmidtke,
• Fadi Aldeek,
• Johannes Ostermann,
• Tatiana Domitrovic,
• Sebastian Gärtner,
• John E. Johnson,
• Horst Weller and
• Hedi Mattoussi

Beilstein J. Nanotechnol. 2019, 10, 2477–2482, doi:10.3762/bjnano.10.238

• on the ability of functional fusion proteins presenting a lytic gamma peptide, to promote interactions with HeLa cells and delivery of large hybrid nanostructures. Keywords: bioconjugation; cellular uptake; nanoparticle hybrids; polymer encapsulation; self-assembly; Introduction Developing hybrid

• various proteins, and among them the human transferrin protein was found to induce the highest intracellular uptake following 24 h incubation of these hybrids with cell cultures [5]. In the second, functional colloidal superstructures assembled using DNA linkers elicited a reduction in the response of

• hybrid system consisting of self-assembled gold nanoparticles (AuNPs) and polymer-encapsulated QDs. These constructs were further functionalized with polyhistidine-tagged proteins, yielding functional conjugates that exhibit fluorescent and plasmonic properties [8]. Over the last two decades several

pH-Controlled fluorescence switching in water-dispersed polymer brushes grafted to modified boron nitride nanotubes for cellular imaging

• Saban Kalay,
• Yurij Stetsyshyn,
• Volodymyr Donchak,
• Khrystyna Harhay,
• Ostap Lishchynskyi,
• Halyna Ohar,
• Yuriy Panchenko,
• Stanislav Voronov and
• Mustafa Çulha

Beilstein J. Nanotechnol. 2019, 10, 2428–2439, doi:10.3762/bjnano.10.233

• )-functionalized BNNTs Fluorescence microscopy of living cells has become an integral part of modern cell biology. Most often cellular imaging is provided using fluorescent labels, including fluorescent dyes, nanoparticles, nanocomposites or proteins [55]. This label must meet certain criteria, such as

Mannosylated brush copolymers based on poly(ethylene glycol) and poly(ε-caprolactone) as multivalent lectin-binding nanomaterials

• Stefania Ordanini,
• Wanda Celentano,
• Anna Bernardi and
• Francesco Cellesi

Beilstein J. Nanotechnol. 2019, 10, 2192–2206, doi:10.3762/bjnano.10.212

• saccharide–protein connections. Carbohydrate-binding proteins are known as lectins. A way to interfere with pathological carbohydrate–protein interactions is the use of artificial ligands able to antagonize lectins, possibly with higher affinity than the natural ligands. Multivalent glycoconjugates have been

• polymer that does not promote immune responses. Pegylation reduces the nonspecific binding of nanoparticles to blood proteins and macrophages, making them non-immunogenic and non-antigenic [21]. PEG-PCL copolymers are amphihilic materials that can spontaneously assemble in aqueous media, forming colloidal

Use of data processing for rapid detection of the prostate-specific antigen biomarker using immunomagnetic sandwich-type sensors

• Camila A. Proença,
• Tayane A. Freitas,
• Thaísa A. Baldo,
• Elsa M. Materón,
• Flávio M. Shimizu,
• Gabriella R. Ferreira,
• Frederico L. F. Soares,
• Ronaldo C. Faria and
• Osvaldo N. Oliveira Jr.

Beilstein J. Nanotechnol. 2019, 10, 2171–2181, doi:10.3762/bjnano.10.210

• The suitability of INμ-SPCEs for detecting PSA in real samples was tested with malignant (LNCap) and non-malignant (PNT-2) cells. In contact with cell lysates containing several proteins, the bioconjugate binds specifically to PSA (PSA-Ab2-MNP-HRP), thus allowing for the capture, separation and

• can be adapted for multiplex detection of biomarkers, in addition to PSA, by combining with other proteins. We also demonstrated that information visualization techniques, so far most commonly used for impedance spectroscopy sensing data, can be applied to amperometric results with a microfluidic

Nitrogen-vacancy centers in diamond for nanoscale magnetic resonance imaging applications

• Alberto Boretti,
• Lorenzo Rosa,
• Jonathan Blackledge and
• Stefania Castelletto

Beilstein J. Nanotechnol. 2019, 10, 2128–2151, doi:10.3762/bjnano.10.207

• coronas of proteins) are fundamental to making nanoprobes biocompatible. However, this promising field still needs to overcome challenges to deliver its full potential. Solid chemical shifts have been measured in 2D with 1 µm accuracy by MR force microscopy [17], a technique that is readily extendable to

Microbubbles decorated with dendronized magnetic nanoparticles for biomedical imaging: effective stabilization via fluorous interactions

• Da Shi,
• Justine Wallyn,
• Dinh-Vu Nguyen,
• Francis Perton,
• Delphine Felder-Flesch,
• Sylvie Bégin-Colin,
• Mounir Maaloum and
• Marie Pierre Krafft

Beilstein J. Nanotechnol. 2019, 10, 2103–2115, doi:10.3762/bjnano.10.205

• range of molecules, including phospholipids [36], polymers [17], proteins [37], biomarkers [38] and CeO2 nanoparticles [39]. But the most important finding here is that the fluorocarbon gas affects the adsorption of the IONPs differently, depending on whether the dendron carries a fluorinated end group

Incorporation of doxorubicin in different polymer nanoparticles and their anticancer activity

• Sebastian Pieper,
• Hannah Onafuye,
• Dennis Mulac,
• Jindrich Cinatl Jr.,
• Mark N. Wass,
• Martin Michaelis and
• Klaus Langer

Beilstein J. Nanotechnol. 2019, 10, 2062–2072, doi:10.3762/bjnano.10.201

• was not increased substantially further using PLGA-PEG nanoparticles. A slight drop in the doxorubicin concentration was noticeable in the medium of the PLGA nanoparticles. This may be the consequence of doxorubicin adsorption to BSA [49], which was added to simulate the presence of plasma proteins

Review of advanced sensor devices employing nanoarchitectonics concepts

• Katsuhiko Ariga,
• Tatsuyuki Makita,
• Masato Ito,
• Taizo Mori,
• Shun Watanabe and
• Jun Takeya

Beilstein J. Nanotechnol. 2019, 10, 2014–2030, doi:10.3762/bjnano.10.198

• having chiral ʟ-serine and ʟ-threonine to discriminate enantiomers of N-acetyl amino acid anions through ratiometric fluorescence analysis. Torsi and co-workers adopted odorant binding proteins to discriminate chiral substances [90]. They immobilized odorant binding proteins to the gate of a water-gated

• receptors and enzymes, and macromolecular interfaces at DNA and proteins. This mechanism for the enhancement of the molecular recognition capability at interfaces is surely applicable to other molecular recognition pairs and should also lead to highly efficient molecular recognition of various aqueous

• nanoarchitectonics concept and its contributions to sensor design and fabrication. A water-gated bio-organic transistor with odorant binding proteins for the discrimination of chiral substances. Highly sensitive humidity sensor based on a triboelectric nanogenerator device where nanochannels in the membrane adsorb

Gold-coated plant virus as computed tomography imaging contrast agent

• Alaa A. A. Aljabali,
• Mazhar S. Al Zoubi,
• Khalid M. Al-Batanyeh,
• Ali Al-Radaideh,
• Mohammad A. Obeid,
• Abeer Al Sharabi,
• Walhan Alshaer,
• Bayan AbuFares,
• Tasnim Al-Zanati,
• Murtaza M. Tambuwala,
• Naveed Akbar and
• David J. Evans

Beilstein J. Nanotechnol. 2019, 10, 1983–1993, doi:10.3762/bjnano.10.195

• purification of the antibody-labeled particles suggesting successful modification of their exterior surface. This observed increase in the hydrodynamic radius is consistent with the previous report of particles coated with proteins [39]. In addition, the UV–vis spectrum was used to evaluate the surface

• modification with proteins [40] and indicates that the surface of the Au-CPMV particles is “smooth”. The shift would be greater if the surface had an uneven shape. In addition, the 4 nm red-shift of the LSPR peak suggests that the modification of the Au-CPMV surface with antibodies has been successful. This

Magnetic properties of biofunctionalized iron oxide nanoparticles as magnetic resonance imaging contrast agents

• Natalia E. Gervits,
• Andrey A. Gippius,
• Alexey V. Tkachev,
• Evgeniy I. Demikhov,
• Sergey S. Starchikov,
• Igor S. Lyubutin,
• Alexander L. Vasiliev,
• Vladimir P. Chekhonin,
• Maxim A. Abakumov,
• Alevtina S. Semkina and
• Alexander G. Mazhuga

Beilstein J. Nanotechnol. 2019, 10, 1964–1972, doi:10.3762/bjnano.10.193

• coated nanoparticles compared to the uncoated nanoparticles [23][24]. According to XRD and TEM, the HSA-coated and uncoated nanoparticles have a similar size, shape, crystal structure and phase composition. Since the nonmagnetic HSA proteins separate the coated particles from each other, the magnetic

Synthesis and potent cytotoxic activity of a novel diosgenin derivative and its phytosomes against lung cancer cells

• Liang Xu,
• Dekang Xu,
• Ziying Li,
• Yu Gao and
• Haijun Chen

Beilstein J. Nanotechnol. 2019, 10, 1933–1942, doi:10.3762/bjnano.10.189

• easily. The cyano group in P2 might increase the binding capability of P2 to specific proteins to improve its anticancer potency. Figure 2A shows that Di and P2 could suppress the cell viability in a dosage-dependent manner in A549 and PC9 cells. All the results demonstrated that P2 had much stronger

Engineered superparamagnetic iron oxide nanoparticles (SPIONs) for dual-modality imaging of intracranial glioblastoma via EGFRvIII targeting

• Xianping Liu,
• Chengjuan Du,
• Haichun Li,
• Ting Jiang,
• Zimiao Luo,
• Zhiqing Pang,
• Daoying Geng and
• Jun Zhang

Beilstein J. Nanotechnol. 2019, 10, 1860–1872, doi:10.3762/bjnano.10.181

• proteins, resulting in the formation of protein corona [48][49]. To minimize the adverse effects of the presence of the protein corona in vivo, the surface coating using PEG can endow the NPs with so-called “stealth” properties to reduce the adsorption of high molecular weight proteins, allowing them to

Novel hollow titanium dioxide nanospheres with antimicrobial activity against resistant bacteria

• Carol López de Dicastillo,
• Cristian Patiño,
• María José Galotto,
• Yesseny Vásquez-Martínez,
• Claudia Torrent,
• Daniela Alburquenque,
• Alejandro Pereira and
• Juan Escrig

Beilstein J. Nanotechnol. 2019, 10, 1716–1725, doi:10.3762/bjnano.10.167

• molecules and proteins of the cellular membrane and a lower amount of substance [2][43][44]. In this work, the evaluation of the antibacterial activity of CSTiO2 with a spherical morphology and nanoscale-thickness of approximately 17 nm was evaluated and compared with traditional TiO2 NPs. The reduction of

• reactive oxygen species (ROS) generation and disruption of bacteria cell walls in the case of E. coli, and release and reactions of ions with thiol groups belonging to proteins of the bacterial membrane of S. aureus [48][49]. Probably, CSTiO2 presented better affinity and greater contact area with Gram

Chiral nanostructures self-assembled from nitrocinnamic amide amphiphiles: substituent and solvent effects

• Hejin Jiang,
• Huahua Fan,
• Yuqian Jiang,
• Li Zhang and
• Minghua Liu

Beilstein J. Nanotechnol. 2019, 10, 1608–1617, doi:10.3762/bjnano.10.156

• , Beijing 100049, China Laboratory for Nanosystem and Hierarchical Fabrication, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology, Beijing 100190, China 10.3762/bjnano.10.156 Abstract Chiral nanostructures, such as α-helical proteins and double helix DNA, are widely

Materials nanoarchitectonics at two-dimensional liquid interfaces

• Katsuhiko Ariga,
• Michio Matsumoto,
• Taizo Mori and
• Lok Kumar Shrestha

Beilstein J. Nanotechnol. 2019, 10, 1559–1587, doi:10.3762/bjnano.10.153

Multicomponent bionanocomposites based on clay nanoarchitectures for electrochemical devices

• Giulia Lo Dico,
• Bernd Wicklein,
• Lorenzo Lisuzzo,
• Giuseppe Lazzara,
• Pilar Aranda and
• Eduardo Ruiz-Hitzky

Beilstein J. Nanotechnol. 2019, 10, 1303–1315, doi:10.3762/bjnano.10.129

• including drugs, proteins, and enzymes [14][15][16][17][18], even serving as nanoreactor for chemical processes [19]. Of particular interest is the use of HNTs for the uptake of enzymes in an approach for the development of (bio)electrochemical devices like biosensors and enzymatic biofuel cells (EBCs) [20

• the inactivity of the entrapped enzyme. This is probably due to the direct interaction of the enzyme with sepiolite and shows the necessity to load the enzyme into the clay nanotubes. It is well known that the electrostatic interaction of proteins with the external surface of sepiolite can be very