Progress and challenges in the synthesis of sequence controlled polysaccharides

• Giulio Fittolani,
• Theodore Tyrikos-Ergas,
• Denisa Vargová,
• Manishkumar A. Chaube and
• Martina Delbianco

Beilstein J. Org. Chem. 2021, 17, 1981–2025, doi:10.3762/bjoc.17.129

Synthesis of multiply fluorinated N-acetyl-D-glucosamine and D-galactosamine analogs via the corresponding deoxyfluorinated glucosazide and galactosazide phenyl thioglycosides

• Vojtěch Hamala,
• Lucie Červenková Šťastná,
• Martin Kurfiřt,
• Petra Cuřínová,
• Martin Dračínský and
• Jindřich Karban

Beilstein J. Org. Chem. 2021, 17, 1086–1095, doi:10.3762/bjoc.17.85

• . Deoxyfluorination at C6 should then afford intermediates 6. Protecting-group manipulation of intermediates 4 and 6 should deliver the required fluoro analogs. The initially contemplated conversion of intermediates 3 into acetates 5 [26], followed by base-catalyzed O-deacetylation, led to substantial decomposition

Stereoselective syntheses of 3-aminocyclooctanetriols and halocyclooctanetriols

• Emine Salamci and
• Yunus Zozik

Beilstein J. Org. Chem. 2021, 17, 705–710, doi:10.3762/bjoc.17.59

• . Similarly, the configuration of the chlorine atom and the acetoxy groups in 26 was determined with 1H NMR and COSY spectra. Finally, deacetylation of chlorotriacetates 25 and 26 was carried out with HCl(g) in MeOH to give the free chlorotriols derivatives 23 and 24. Conclusion The synthesis of two

Synthesis of (Z)-3-[amino(phenyl)methylidene]-1,3-dihydro-2H-indol-2-ones using an Eschenmoser coupling reaction

• Lukáš Marek,
• Lukáš Kolman,
• Jiří Váňa,
• Jan Svoboda and
• Jiří Hanusek

Beilstein J. Org. Chem. 2021, 17, 527–539, doi:10.3762/bjoc.17.47

• derivative. Such nitrogen protection/deprotection (e.g., acetylation/deacetylation) is often used in the other synthetic strategies described in Scheme 1. Therefore, the starting isatin was acetylated first with acetic anhydride [47] in 95% yield and then reduced with various complex borohydrides (e.g

Regioselective chemoenzymatic syntheses of ferulate conjugates as chromogenic substrates for feruloyl esterases

• Olga Gherbovet,
• Fernando Ferreira,
• Apolline Clément,
• Mélanie Ragon,
• Julien Durand,
• Sophie Bozonnet,
• Michael J. O'Donohue and
• Régis Fauré

Beilstein J. Org. Chem. 2021, 17, 325–333, doi:10.3762/bjoc.17.30

• the primary hydroxy group compare favorably with the previously reported overall yield (46 and 47%, respectively, in three steps) [15][16][17][29], which relate to the selective enzymatic O-5-deacetylation and esterification of the primary hydroxy group and a final deprotection of the 2,3-O-acetyl

The preparation and properties of 1,1-difluorocyclopropane derivatives

• Kymbat S. Adekenova,
• Peter B. Wyatt and
• Sergazy M. Adekenov

Beilstein J. Org. Chem. 2021, 17, 245–272, doi:10.3762/bjoc.17.25

• targets of biological interest was provided by Csuk and Eversmann [32] who performed the synthesis of difluorinated nucleosides (Scheme 11). The difluorocyclopropane derivative 14 was prepared using sodium chlorodifluoroacetate (12) as a source of the carbene (Scheme 11). The subsequent deacetylation of

• [81]. The authors obtained the chiral monoacetate intermediates (R)-78 and (S)-80 by lipase-catalyzed methods. The lipase-catalyzed asymmetric transesterification of prochiral diol 77 and the deacetylation of the prochiral diacetate 79 resulted in the formation of the (R)-monoacetate (R)-78 and (S

• )-monoacetate (S)-80, respectively (Scheme 32). As for the transesterification, a high yield (96.5%) and enantioselectivity (91.3% ee) were obtained using lipase PS in benzene. In the case of the deacetylation, the use of Amano PS lipase in acetone gave a high yield (86.2%), enantioselectivity (91.7% ee), and

Facile preparation and conversion of 4,4,4-trifluorobut-2-yn-1-ones to aromatic and heteroaromatic compounds

• Takashi Yamazaki,
• Yoh Nakajima,
• Minato Iida and
• Tomoko Kawasaki-Takasuka

Beilstein J. Org. Chem. 2021, 17, 132–138, doi:10.3762/bjoc.17.14

• of the base (Table 3, entries 8 and 9). For the present transformation, Hu and Guan already reported a similar type of ring closure of the substrate 3fa [30], which allowed the conversion to the phenolic product 5f as a result of the cyclization and was accompanied by deacetylation under the

• the isolated product 4aa was subjected to the conditions shown in Table 3, entry 4, no reaction was observed at all, with recovery of 4aa, which clearly demonstrated that the deacetylation step had occurred before the conversion to 4aa. In the present cyclization, the ionic character of the alkoxide

Progress in the total synthesis of inthomycins

• Bidyut Kumar Senapati

Beilstein J. Org. Chem. 2021, 17, 58–82, doi:10.3762/bjoc.17.7

• 90% yield. The transformation of acid (+)-73 to acetate (+)-76 using acetic anhydride in pyridine followed by acid activation with oxalyl chloride and then in situ treatment with 28% ammonium hydroxide afforded amide (−)-77 in 90% yield. Finally, deacetylation of (−)-77 using lithium hydroxide

• % yield. Finally, compound (+)-76 underwent amidation and deacetylation to give an 11.1:1 mixture of geometrical isomers of inthomycin C ((−)-3) in 77% yield over two steps (Scheme 17) [50]. The (3R) stereochemistry of (−)-3 was confirmed by MTPA ester derivatization, which supports the recent work by

Palladium nanoparticles supported on chitin-based nanomaterials as heterogeneous catalysts for the Heck coupling reaction

• Tony Jin,
• Malickah Hicks,
• Davis Kurdyla,
• Sabahudin Hrapovic,
• Edmond Lam and
• Audrey Moores

Beilstein J. Org. Chem. 2020, 16, 2477–2483, doi:10.3762/bjoc.16.201

• the use of ammonium persulfate as a mild oxidizing agent to liberate the nanocrystallites existing within bulk chitin to yield ChNC with carboxylate functionalities [16]. Moreover, deacetylation of ChNCs in alkaline conditions, in the presence of NaBH4, led to chitosan nanocrystals (ChsNCs) with

• ChNCs and ChsNCs confirmed the structural and chemical functional properties of these nanomaterials. We turned to Fourier transform infrared (FTIR) spectroscopy to access the degree of deacetylation (DDA) of the prepared materials (Supporting Information File 1, Figure S2). The ratio of primary amine

• nanomaterials. Specifically, the deacetylation of ChNC into ChsNC led to a decrease in crystallinity in the nanomaterial. Indeed, this can be seen in the FTIR with the broadening of the N–H and O–H stretches from 3000–3500 cm−1. This was more notable in the powder X-ray diffraction (PXRD) spectra of ChNCs and

Synthesis of monophosphorylated lipid A precursors using 2-naphthylmethyl ether as a protecting group

• Jundi Xue,
• Ziyi Han,
• Gen Li,
• Khalisha A. Emmanuel,
• Cynthia L. McManus,
• Qiang Sui,
• Dongmian Ge,
• Qi Gao and
• Li Cai

Beilstein J. Org. Chem. 2020, 16, 1955–1962, doi:10.3762/bjoc.16.162

• ) group under basic conditions followed by peracetylation afforded compound 10 on a ≈150 g scale. The regioselective anomeric deacetylation with hydrazine and reprotection of the anomeric hydroxy group as tert-butyldimethylsilyl ether (TBS) led to compound 12. Compound 12 was then treated with sodium

• methoxide in guanidine hydrochloride buffer solution (pH ≈ 9) to remove the O-3,4,6-acetyl groups [14]. Because the deacetylation reaction was later neutralized with cation exchange resin, extra washing with saturated NaHCO3 during reaction work-up seemed necessary to avoid cleavage of the TBS ether in

Selective preparation of tetrasubstituted fluoroalkenes by fluorine-directed oxetane ring-opening reactions

• Clément Q. Fontenelle,
• Thibault Thierry,
• Romain Laporte,
• Emmanuel Pfund and
• Thierry Lequeux

Beilstein J. Org. Chem. 2020, 16, 1936–1946, doi:10.3762/bjoc.16.160

• deacetylation, 28 was readily converted to E-24 (see Scheme 8). These transformations of alkene E-9 illustrated how the geometry can be controlled for the preparation of tetrasubstituted fluoroalkenes. The synthesis of nucleotide mimics from either phosphonate 29 or azide 28 is underway and will be reported in

Recent synthesis of thietanes

• Jiaxi Xu

Beilstein J. Org. Chem. 2020, 16, 1357–1410, doi:10.3762/bjoc.16.116

Design and synthesis of diazine-based panobinostat analogues for HDAC8 inhibition

• Sivaraman Balasubramaniam,
• Sajith Vijayan,
• Liam V. Goldman,
• Xavier A. May,
• Kyra Dodson,
• Sweta Adhikari,
• Fatima Rivas,
• Davita L. Watkins and
• Shana V. Stoddard

Beilstein J. Org. Chem. 2020, 16, 628–637, doi:10.3762/bjoc.16.59

• involve acetylation/deacetylation of histone proteins by histone deacetylases (HDACs) [1]. HDACs belong to an important family of enzymes consisting of 18 isozymes. They control protein acetylation, which is a change that occurs after translation. In addition, they regulate gene transcription, cell

• differentiation, cell cycle progression and apoptosis by targeting both histone and non-histone proteins. The balance between acetylation and deacetylation is pivotal for typical cell function. Abnormal or increased HDAC expression has been reported in several human tumors and cancer cell lines [2]. As such, the

Targeted photoswitchable imaging of intracellular glutathione by a photochromic glycosheet sensor

• Xianzhi Chai,
• Hai-Hao Han,
• Yi Zang,
• Jia Li,
• Xiao-Peng He,
• Junji Zhang and
• He Tian

Beilstein J. Org. Chem. 2019, 15, 2380–2389, doi:10.3762/bjoc.15.230

• 4 according to reported methods [27]. Then, the photochromic fluorophore intermediate 7 was synthesized by coupling compounds 3 and 6 through amidation. The Glyco-DTE reporter was prepared by click reaction between compound 7 and acetylated β-ᴅ-galactoside, followed by deacetylation. Similarly, a

Design, synthesis and biological evaluation of immunostimulating mannosylated desmuramyl peptides

• Rosana Ribić,
• Ranko Stojković,
• Lidija Milković,
• Mariastefania Antica,
• Marko Cigler and
• Srđanka Tomić

Beilstein J. Org. Chem. 2019, 15, 1805–1814, doi:10.3762/bjoc.15.174

• performed. Boc deprotection of obtained compound 6 gave the trifluoroacetic salt of peptide 7 which was used in the synthesis of mannoconjugates. The mannose precursor containing the glycolyl linker 11 was prepared in a three-step procedure shown in Scheme 3. The stereoselective α-anomeric deacetylation of

• peptide moieties. The tert-butyl deprotection was accomplished using a selective reagent, trifluoroacetic acid (TFA). Side products derived from deacetylation of compound 10 have not been detected. The synthesis of benzyl-protected α-mannoside containing a (R)-hydroxyisobutyryl linker was previously

N-(1-Phenylethyl)aziridine-2-carboxylate esters in the synthesis of biologically relevant compounds

• Iwona E. Głowacka,
• Aleksandra Trocha,
• Andrzej E. Wróblewski and
• Dorota G. Piotrowska

Beilstein J. Org. Chem. 2019, 15, 1722–1757, doi:10.3762/bjoc.15.168

• the hydroxy group preceded the aziridine ring opening with acetic acid while hydrogenation in the presence of Boc2O led to the formation of (3R,4R)-151. To conclude the synthesis of (2S,3R)-148 the hydroxymethyl group was recovered after basic deacetylation and it was further oxidized and esterified

Mechanochemical amorphization of chitin: impact of apparatus material on performance and contamination

• Thomas Di Nardo and
• Audrey Moores

Beilstein J. Org. Chem. 2019, 15, 1217–1225, doi:10.3762/bjoc.15.119

• is reduced by mechanical forces [17][24][50][51] or otherwise [52] by deforming particles and breaking lattice imperfections [50]. For biomass processing, amorphization has been used in several studies [24][53][54], either as a pretreatment [21] prior to deacetylation [18][55], enzymatic [22][56][57

Design and synthesis of multivalent α-1,2-trimannose-linked bioerodible microparticles for applications in immune response studies of Leishmania major infection

• Chelsea L. Rintelmann,
• Tara Grinnage-Pulley,
• Kathleen Ross,
• Daniel E. K. Kabotso,
• Angela Toepp,
• Anne Cowell,
• Christine Petersen,
• Balaji Narasimhan and
• Nicola Pohl

Beilstein J. Org. Chem. 2019, 15, 623–632, doi:10.3762/bjoc.15.58

• of the CbzF-protected aminopentanol 7 afforded the monosaccharide 8 (Scheme 2). The 2-O-position was then deacylated, followed by iterative glycosylation/deacetylation with donor 3 to provide dimannoside acceptor 11. TCA-mannose donor 3 was initially used to cap the dimannoside 11. However

Cyclopropene derivatives of aminosugars for metabolic glycoengineering

• Jessica Hassenrück and
• Valentin Wittmann

Beilstein J. Org. Chem. 2019, 15, 584–601, doi:10.3762/bjoc.15.54

• Scheme 3. Alcohol 4 was activated with 4-nitrophenyl chloroformate, and the obtained carbonate 5 reacted with neutralized mannosamine and peracetylated as described above to give Ac4ManNCyoc(H2) in a yield of 57%. Deacetylation with N,N-ethyldimethylamine in methanol and further aldolase reaction and DMB

Syntheses and chemical properties of β-nicotinamide riboside and its analogues and derivatives

• Mikhail V. Makarov and
• Marie E. Migaud

Beilstein J. Org. Chem. 2019, 15, 401–430, doi:10.3762/bjoc.15.36

• remained in the acetone washings. This patent also divulges the synthesis of 2,3,5-tri-O-acetyl-D-ribofuranosyl chloride (β/α ratio is 6:4) using an extruder with the aim of developing a continuous production of compound 4a. Deacetylation of 4a to give the desired β-NR+Cl− salt was studied under acidic (aq

• as recommended by Lee et al. [27]), and with subsequent – after the completion of deacetylation – evaporating excessive ammonia at temperatures also below 0 °C [25][39]. Moreover, because of the limitations associated with different stability to different pH ranges, the reduction of NR+ to NRH must

Synthesis of nonracemic hydroxyglutamic acids

• Dorota G. Piotrowska,
• Iwona E. Głowacka,
• Andrzej E. Wróblewski and
• Liwia Lubowiecka

Beilstein J. Org. Chem. 2019, 15, 236–255, doi:10.3762/bjoc.15.22

• removal of the chiral auxiliary with simultaneous formation of a N-Boc derivative 30. The hydroxymethyl to carboxylate transformation to form the protected diester (2S,3R)-31 required prior basic deacetylation followed by standard oxidation and esterification. Diastereoisomer (2S,3S)-31 was also prepared

Microwave-assisted synthesis of biologically relevant steroidal 17-exo-pyrazol-5'-ones from a norpregnene precursor by a side-chain elongation/heterocyclization sequence

• Gergő Mótyán,
• László Mérai,
• Márton Attila Kiss,
• Zsuzsanna Schelz,
• Izabella Sinka,
• István Zupkó and
• Éva Frank

Beilstein J. Org. Chem. 2018, 14, 2589–2596, doi:10.3762/bjoc.14.236

• heterocyclization. In order to enlarge the compound library available for pharmacological studies, the 3β-OH analogs 7a–j of the primary products 6a–j were also synthesized through simple alkaline deacetylation (Scheme 2, Table 1). The structures of all synthesized compounds were characterized by 1H and 13C NMR

D-Fructose-based spiro-fused PHOX ligands: synthesis and application in enantioselective allylic alkylation

• Michael R. Imrich,
• Jochen Kraft,
• Cäcilia Maichle-Mössmer and
• Thomas Ziegler

Beilstein J. Org. Chem. 2018, 14, 2082–2089, doi:10.3762/bjoc.14.182

• derivative of 10 was prepared. The acetyl groups of 10i can easily be removed by Zemplén deacetylation (Scheme 3) [34]. Instead of the classical protocol with sodium methoxide, ammonia in methanol was applied, because oxazolines are sensitive to acid and with ammonia no acid has to be added to neutralize the

• phosphines can be used as nucleophiles for deacetylation reactions [50][51]. We suppose that the lower yields of 5f–i and 14a can be explained by partial or full deacylation of the protective groups. This explanation is also in good accordance with the fact that the yield of the ester protected PHOX ligand

• different substitution pattern at positions 3, 4 and 5. PG: protective group, X: leaving group. Activation of 7 to oxocarbenium ion 9 in the Ritter reaction. Zemplén deacetylation of 10i. Benzylation of 10j to give 10b. Plausible mechanism of the Ritter reaction. For better clarity C-2 is not shown in

Phosphoramidite building blocks with protected nitroxides for the synthesis of spin-labeled DNA and RNA

• Timo Weinrich,
• Eva A. Jaumann,
• Ute M. Scheffer,
• Thomas F. Prisner and
• Michael W. Göbel

Beilstein J. Org. Chem. 2018, 14, 1563–1569, doi:10.3762/bjoc.14.133

• . Results and Discussion To prepare compound 5, the deoxyuridine derivative 9 [44] was activated by sulfonylation and then treated with the protected TEMPO building block 10 [43] to provide 11 (Scheme 1). After deacetylation, phosphitylation of 12 straightforwardly led to amidite 5 in multigram amounts. In

• 6-chloro derivative 13 as starting material, easily accessible from deoxyadenosine via enzymatic deamination, acetylation [37] and chlorination. This compound reacted cleanly and yielded 67% of the TEMPO conjugate 14. After deacetylation (15) and tritylation (16), amidite building block 7 was

Mechanochemistry of nucleosides, nucleotides and related materials

• Olga Eguaogie,
• Joseph S. Vyle,
• Patrick F. Conlon,
• Manuela A. Gîlea and
• Yipei Liang

Beilstein J. Org. Chem. 2018, 14, 955–970, doi:10.3762/bjoc.14.81

• in a MBM. Thiolate displacement reactions of nucleoside derivatives in a MBM. Selenocyanate displacement reactions of nucleoside derivatives in a MBM. Nucleobase glycosidation reactions and subsequent deacetylation performed in a MBM. Regioselective phosphorylation of nicotinamide riboside in a MBM