Recent advances in the application of isoindigo derivatives in materials chemistry

• Andrei V. Bogdanov and
• Vladimir F. Mironov

Beilstein J. Org. Chem. 2021, 17, 1533–1564, doi:10.3762/bjoc.17.111

• the introduction of aromatic substituents of variable nature into the oligomer structure. By the example of pyrene derivatives 7 and 8, the dependence of the binding type of the aromatic fragment to the isoindigo core was revealed. The synthetic procedure for the preparation of these monoisoindigoid

• derivatives is based on the Suzuki reaction. At the same time, pyrene-1-ylboronic acid and 6,6'-dibromoisoindigo were used to introduce a pyrene fragment directly into the isoindigo nucleus, and to obtain a thiophene analogue, pyrenyl-substituted 2-bromothiophene and 6,6'-bis(4,4,5,5-tetramethyl-1,3,2

Double-headed nucleosides: Synthesis and applications

• Vineet Verma,
• Jyotirmoy Maity,
• Vipin K. Maikhuri,
• Ritika Sharma,
• Himal K. Ganguly and
• Ashok K. Prasad

Beilstein J. Org. Chem. 2021, 17, 1392–1439, doi:10.3762/bjoc.17.98

• -triazolo[3,4-b](1,3,4)-thiadiazole moieties [21]. Additionally, selected examples of double-headed nucleosides comprising aromatic/polyaromatic/carbocyclic moieties such as phenyl [13][14][15][22], pyrene [23][24][25], adamant-1-yl [24], cholesteryl [24], perylen-3-yl [24], 4-(tert-butyldimethylsilyloxy

• way junctions. There was a four-fold increase in the intensity of the pyrene excimer signal observed when an oligonucleotide containing two incorporations of the double-headed nucleoside 41 hybridized with an RNA target whereas the pyrene–pyrene excimer band almost vanished when the oligonucleotide

A comprehensive review of flow chemistry techniques tailored to the flavours and fragrances industries

• Guido Gambacorta,
• James S. Sharley and
• Ian R. Baxendale

Beilstein J. Org. Chem. 2021, 17, 1181–1312, doi:10.3762/bjoc.17.90

Selected peptide-based fluorescent probes for biological applications

• Debabrata Maity

Beilstein J. Org. Chem. 2020, 16, 2971–2982, doi:10.3762/bjoc.16.247

• intensities of absorption or emission at two wavelengths minimizes the error from the physical or chemical fluctuations in the sample. Conventional peptide probes based on environment-sensitive fluorophores [20][21][22], fluorescence resonance energy transfer (FRET) pairs [13] and pyrene excimer/monomer [23

• to perform FRET in vitro and in vivo, particularly in living cells [30]. FRET-based peptide probes are heavily used for ratiometric fluorescence detection of biomolecules. Pyrene-functionalized oligonucleotides and locked nucleic acids (LNAs) are considerably used for targeting nucleic acids [31

• use of pyrene as a fluorophore has two major disadvantages such as poor quantum yield and an emission in the blue region, which is unfavorable for potential applications in biological systems. The Schmuck group successfully developed several peptide-based probes using these approaches for targeting

Easy access to a carbohydrate-based template for stimuli-responsive surfactants

• Thomas Holmstrøm,
• Daniel Raydan and
• Christian Marcus Pedersen

Beilstein J. Org. Chem. 2020, 16, 2788–2794, doi:10.3762/bjoc.16.229

• metal-binding event. This study was carried out by having pyrene fluorophores attached to the two non-chelating positions, giving rise to excimer fluorescence when the distance between them was decreased due to the ring flip [12]. Carbohydrates with gluco stereochemistry have also been used as templates

Selective recognition of ATP by multivalent nano-assemblies of bisimidazolium amphiphiles through “turn-on” fluorescence response

• Rakesh Biswas,
• Surya Ghosh,
• Shubhra Kanti Bhaumik and
• Supratim Banerjee

Beilstein J. Org. Chem. 2020, 16, 2728–2738, doi:10.3762/bjoc.16.223

• Rakesh Biswas Surya Ghosh Shubhra Kanti Bhaumik Supratim Banerjee Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur-741246, Nadia, India 10.3762/bjoc.16.223 Abstract Bisimidazolium receptors, tagged with chromophoric pyrene at one end and linked

• to an n-alkyl chain at the other, underwent self-assembly in aqueous media depending on the length of the alkyl segment. The amphiphilic derivatives having n-decyl or longer chains, formed nano-assemblies with cyanic–green emission resulting from the stacked pyrene chromophores in the aggregates. The

• multiple imidazolium groups to overcome the high hydration enthalpy of phosphates and b) the imidazolium groups are connected to aromatic moieties such as anthracene, pyrene, etc. The variation in the luminescence of the aromatic moieties signals the binding event and furthermore, they provide additional

NMR Spectroscopy of supramolecular chemistry on protein surfaces

• Peter Bayer,
• Anja Matena and
• Christine Beuck

Beilstein J. Org. Chem. 2020, 16, 2505–2522, doi:10.3762/bjoc.16.203

• perturbation and line broadening observed in the 1H,15N-HSQC titrations. The smallest ligand 4PSA showed the highest specificity, locating to the hydrophobic triad, where ubiquitin binds many of its protein interaction partners, which is surrounded by cationic residues. The flat, hydrophobic pyrene core can

The B & B approach: Ball-milling conjugation of dextran with phenylboronic acid (PBA)-functionalized BODIPY

• Patrizia Andreozzi,
• Lorenza Tamberi,
• Elisamaria Tasca,
• Gina Elena Giacomazzo,
• Marta Martinez,
• Mirko Severi,
• Marco Marradi,
• Stefano Cicchi,
• Sergio Moya,
• Giacomo Biagiotti and
• Barbara Richichi

Beilstein J. Org. Chem. 2020, 16, 2272–2281, doi:10.3762/bjoc.16.188

• solution-based synthetic route. PBA-BODIPY dextran assembles into nanoparticles of around 200 nm by hydrophobic interactions. The resulting PBA-BODIPY dextran nanoparticles retain an apolar interior as proved by pyrene fluorescence, suitable for the encapsulation of hydrophobic drugs with high

• assemblies of the conjugate Dex-1b a simple experiment with pyrene was conducted. It is well known that the fluorescence spectrum of pyrene is very sensitive to the polarity of the environment [37]. Indeed, the ratio (I1/I3) between the first (I1 = 372 nm) and the third bands (I3 = 383 nm) in the emission

• spectra of pyrene could be used to estimate the polarity of the environment of the dye in an empirical way. The ratio of the two bands in an environment of unknown polarity can be compared with the values of this ratio in solvents of known polarity. The spectrum of pyrene dissolved in a water dispersion

Synthetic approaches to bowl-shaped π-conjugated sumanene and its congeners

• Shakeel Alvi and
• Rashid Ali

Beilstein J. Org. Chem. 2020, 16, 2212–2259, doi:10.3762/bjoc.16.186

• reaction yielded 92 (Scheme 21). As can be seen from the literature, pyrene-based compounds remain among the highest beautiful and fascinating classes of molecules because of their extremely characteristic (“fingerprint”) optical absorption as well as emission behavior. Keeping in mind the uniqueness of

• the pyrene moiety, an appealing sumanene derivative 93, namely as pyrenylsumanene, was constructed by the groups of Higashibayashi and Sakurai which display both herringbone and columnar crystal packing (Scheme 22) [53]. To synthesize this architecturally interesting molecule, they began with the

One-pot synthesis of dicyclopenta-fused peropyrene via a fourfold alkyne annulation

• Ji Ma,
• Yubin Fu,
• Junzhi Liu and
• Xinliang Feng

Beilstein J. Org. Chem. 2020, 16, 791–797, doi:10.3762/bjoc.16.72

• methods towards the (di-)cyclopenta-fused pyrene congeners (i–iii, Scheme 1) have mainly been reliant on the flash vacuum pyrolysis of suitable precursors under harsh conditions (T ≥ 900 °C), which resulted in relatively low yields [21][22][23][24]. Palladium-catalyzed annulation has been recently proven

• as an efficient route to get access to aromatic hydrocarbons with peri-fused five-membered rings [25][26][27]. For instance, the dicyclopenta-fused pyrene derivatives ii and iii (Scheme 1) were successfully synthesized through palladium-catalyzed carbannulation of brominated pyrene with

• arylacetylenes in good yield [28][29]. However, the larger CP-PAHs beyond the pyrene core, or its extended analogs [30] remain elusive. Peropyrene (Scheme 1), as the higher homolog of pyrene, has recently attracted attention because of its promising applications in optoelectronics, e.g., for singlet fission

Synthesis of C₇₀-fragment buckybowls bearing alkoxy substituents

• Yumi Yakiyama,
• Shota Hishikawa and
• Hidehiro Sakurai

Beilstein J. Org. Chem. 2020, 16, 681–690, doi:10.3762/bjoc.16.66

• that with C60 fragment because most of them consists of acene and/or pyrene units, which might give unique photochemical and electrochemical properties. Recently, we synthesized a buckybowl C28H14 1, which is corresponding to a 40% fragment of C70, from C60-fragment sumanene (2) in three steps via ring

Copper-catalyzed remote C–H arylation of polycyclic aromatic hydrocarbons (PAHs)

• Anping Luo,
• Min Zhang,
• Zhangyi Fu,
• Jingbo Lan,
• Di Wu and
• Jingsong You

Beilstein J. Org. Chem. 2020, 16, 530–536, doi:10.3762/bjoc.16.49

• groups. Under standard conditions, the remote C–H arylation of other PAHs including phenanthrene-9-carboxamide, pyrene-1-carboxamide and fluoranthene-3-carboxamide has also accomplished, which provides an opportunity for the development of diverse organic optoelectronic materials. Keywords: C–H

• arylation; nonprecious metal catalyst; copper catalysis; polycyclic aromatic hydrocarbons (PAHs); regioselectivity; Introduction Polycyclic aromatic hydrocarbons (PAHs) with rigid planar structure, such as naphthalene, phenanthrene, pyrene and their derivatives, can usually emit relatively strong

• Pd(II) species to more electrophilic high-valent cationic Pd(IV). In addition, this protocol is not compatible with other PAHs except naphthalene, such as phenanthrene, pyrene and fluoranthene, and cannot tolerate some special functional groups, such as alkenyl and alkynyl groups. As a component part

Photophysics and photochemistry of NIR absorbers derived from cyanines: key to new technologies based on chemistry 4.0

• Bernd Strehmel,
• Christian Schmitz,
• Ceren Kütahya,
• Yulian Pang,
• Anke Drewitz and
• Heinz Mustroph

Beilstein J. Org. Chem. 2020, 16, 415–444, doi:10.3762/bjoc.16.40

• -free ATRP strategy [132][133][134][135][136][137]. Latter reference provided a comprehensive overview demonstrating the function of phenothiazine derivatives, perylene, diaryl dihydrophenazines, anthracene or pyrene. In addition, type II photoinitiators including benzophenone, and thioxanthones were

Arylisoquinoline-derived organoboron dyes with a triaryl skeleton show dual fluorescence

• Vânia F. Pais,
• Tristan Neumann,
• Ignacio Vayá,
• M. Consuelo Jiménez,
• Abel Ros and
• Uwe Pischel

Beilstein J. Org. Chem. 2019, 15, 2612–2622, doi:10.3762/bjoc.15.254

• dye 18 is insensitive to oxygen and was tentatively attributed to the formation of a pyrene-based radical cation, resulting from photoionization [46]. Interaction with fluoride anions The presence of the boronic acid ester moiety does not only contribute to significant changes in the fluorescence

Effect of ring size on photoisomerization properties of stiff stilbene macrocycles

• Sandra Olsson,
• Óscar Benito Pérez,
• Magnus Blom and
• Adolf Gogoll

Beilstein J. Org. Chem. 2019, 15, 2408–2418, doi:10.3762/bjoc.15.233

• , we were interested in the effect that the length of an n-alkane chain connecting the two halves of stiff stilbene might have. Similar studies, with stilbene and pyrene as the modulating units, have recently been published [19][20]. Our group has reported a SS-based bis-metalloporphyrin molecular

Synthesis of a [6]rotaxane with singly threaded γ-cyclodextrins as a single stereoisomer

• Jason Yin Hei Man and
• Ho Yu Au-Yeung

Beilstein J. Org. Chem. 2019, 15, 1829–1837, doi:10.3762/bjoc.15.177

• [32][33][34][35][36]. By adopting a stepwise stoppering approach, Anderson and co-workers have synthesized a [3]rotaxane consisting of two different axles, derived from a stilbene and a cyanine, threaded through one γ-CD [33]. Inouye has also reported a [3]rotaxane with two pyrene-derived axles

Host–guest interactions in nor-seco-cucurbit[10]uril: novel guest-dependent molecular recognition and stereoisomerism

• Xiaodong Zhang,
• Wei Wu,
• Zhu Tao and
• Xin-Long Ni

Beilstein J. Org. Chem. 2019, 15, 1705–1711, doi:10.3762/bjoc.15.166

• Xiaodong Zhang Wei Wu Zhu Tao Xin-Long Ni Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province, Guizhou University, Guiyang 550025, China 10.3762/bjoc.15.166 Abstract The unique monomer and excimer fluorescence emissions of pyrene were first exploited as distinctly

• ]. Keywords: fluorescent; host–guest interaction; macrocycles; molecular recognition; nor-seco-cucurbit[10]uril; pyrene; Introduction Host–guest interactions that trigger molecular recognition are a current topic of interest. For example, understanding the protein–ligand molecular recognition is of paramount

• imidazolidone units of host-2 that rigidify its structure and make it selective toward smaller guests. However, we found that the ADA group can be accommodated into the cavity of host-2 when a larger hydrophobic unit such as pyrene instead of a benzyl group was appended to the ADA scaffold (G2). Interestingly

Selective detection of DABCO using a supramolecular interconversion as fluorescence reporter

• Indrajit Paul,
• Debabrata Samanta,
• Sudhakar Gaikwad and
• Michael Schmittel

Beilstein J. Org. Chem. 2019, 15, 1371–1378, doi:10.3762/bjoc.15.137

• fluorescence at λ = 602 nm. Ligands, such as pyrazine, 2-chloropyrazine, 1,4-dimethylpiperazine, anthracene, pyrene, coronene, perylene, and perylene-3,4,9,10-tetracarboxylic dianhydride were compared to DABCO. Only in presence of DABCO the fluorescence maximum was shifted to λ = 618 nm along with the color

• repulsion. For instance, pyrazine creates notable repulsive interactions of the α-H towards the zinc porphyrin ring in a sandwich complex. Apparently, stability gains through π–π stacking in the sandwich with pyrene, coronene, etc. are not strong enough to compensate for the strain in [Cu2(1)(2)(guest)]2

Mechanochemical Friedel–Crafts acylations

• Mateja Đud,
• Anamarija Briš,
• Iva Jušinski,
• Davor Gracin and
• Davor Margetić

Beilstein J. Org. Chem. 2019, 15, 1313–1320, doi:10.3762/bjoc.15.130

• method in the synthesis of covalent triazine frameworks. Herein, we report related results on solvent-free FC acylation reactions conducted in a ball mill, which is the continuation of our program in organic mechanosynthesis [20][21][22][23][24]. Results and Discussion Mechanochemical FCR of pyrene (1

• ) and phthalic anhydride (2) producing 1-(o-carboxybenzoyl)pyrene (3) was selected for the optimization of reaction conditions since all reagents and catalyst are solids (Scheme 1, Table 1) [25]. In solution, this reaction is facile and the product could be obtained in quantitative yield (Table 1, entry

• pyrene without the decrease in yield (Table 1, entry 24) [41][42]. To investigate the scope of the reaction, several acylation reagents were employed in conjunction with pyrene (Scheme 2) and a variety of aromatic substrates was subjected to FC acylation (Scheme 3). Acylation reagents shown in Scheme 2

Adhesion, forces and the stability of interfaces

• Robin Guttmann,
• Johannes Hoja,
• Christoph Lechner,
• Reinhard J. Maurer and
• Alexander F. Sax

Beilstein J. Org. Chem. 2019, 15, 106–129, doi:10.3762/bjoc.15.12

N-Arylphenothiazines as strong donors for photoredox catalysis – pushing the frontiers of nucleophilic addition of alcohols to alkenes

• Fabienne Speck,
• David Rombach and
• Hans-Achim Wagenknecht

Beilstein J. Org. Chem. 2019, 15, 52–59, doi:10.3762/bjoc.15.5

• estimated to values of Ered(S/S−·) = −3.0 V [25]. In our initial photoredox catalyst screening [26], we identified 1-(N,N-dimethylamino)pyrene (16) having an excited-state reduction potential E*ox(P+·/P*) of −2.4 V (determined by cyclic voltammetry and E00). Thus, we are able to photoreduce 1,1

• ). The initial conditions included irradiation of substrate 13a in the presence of the catalyst (5 mol %) in methanol and triethylamine (10% (v/v)) as the additive according to our previously reported photoredox catalysis with pyrene 16 [18]. Under these conditions the product 17 was formed in a yield of

• 31%. It turned out that omitting the additive as electron shuttle enhanced the catalytic efficiency and the yield increased up to 84%. Obviously, this is a major difference between the photoredox catalysis with pyrene 16, where triethylamine was absolutely crucial to obtaining good product yields

Organometallic vs organic photoredox catalysts for photocuring reactions in the visible region

• Aude-Héloise Bonardi,
• Frédéric Dumur,
• Guillaume Noirbent,
• Jacques Lalevée and
• Didier Gigmes

Beilstein J. Org. Chem. 2018, 14, 3025–3046, doi:10.3762/bjoc.14.282

• detailed in Table 9. In order to be concise, only three kinds of organophotocatalysts have been described in the present review. However, over the years, a large number of different organophotocalysts has been described in the literature. Notably, pyrene [89], truxene [90][91][92], polyaromatic

Tetrathiafulvalene – a redox-switchable building block to control motion in mechanically interlocked molecules

• Hendrik V. Schröder and
• Christoph A. Schalley

Beilstein J. Org. Chem. 2018, 14, 2163–2185, doi:10.3762/bjoc.14.190

• MOF NU-1000 consists of Zr6 nodes which are bridged by 1,3,6,8-tetrakis(p-carboxyphenyl)pyrene ligands [109]. Four hydroxy groups of each metal cluster are pointing into the mesoporous channels of the MOF and can be post-functionalized. Similar to a previous report about rotaxanes implemented into a

Synthesis of new p-tert-butylcalix[4]arene-based polyammonium triazolyl amphiphiles and their binding with nucleoside phosphates

• Vladimir A. Burilov,
• Guzaliya A. Fatikhova,
• Mariya N. Dokuchaeva,
• Ramil I. Nugmanov,
• Diana A. Mironova,
• Pavel V. Dorovatovskii,
• Victor N. Khrustalev,
• Svetlana E. Solovieva and
• Igor S. Antipin

Beilstein J. Org. Chem. 2018, 14, 1980–1993, doi:10.3762/bjoc.14.173

• pyrene and eosin Y as dye probes. The CAC values of tetraalkyl-substituted macrocycles 12a,b (5 µM for both) are significantly lower than those for dialkyl-substituted macrocycles 10a,b (790 and 160 µM, respectively). Premicellar aggregates of macrocycles 10a,b and 12a,b with the dye eosin Y were used

• performed by the dye micellization method using pyrene and eosin Y (EY) as fluorescent and spectrophotometric probes, respectively (Table 1). The nonpolar pyrene can be incorporated into hydrophobic domains of the aggregates due to hydrophobic interactions. Pyrene insertion is measured by analyzing the

• lower CACs than ionic ones owing to the lack of electrostatic repulsions between head groups [43]. In the case of pyrene there is no charge compensation and interactions occur exclusively with hydrophobic domains of the aggregates. Thus, using pyrene reveals the real CAC value, while with EY the CAC

A three-armed cryptand with triazine and pyridine units: synthesis, structure and complexation with polycyclic aromatic compounds

• Claudia Lar,
• Adrian Woiczechowski-Pop,
• Attila Bende,
• Ioana Georgeta Grosu,
• Natalia Miklášová,
• Elena Bogdan,
• Niculina Daniela Hădade,
• Anamaria Terec and
• Ion Grosu

Beilstein J. Org. Chem. 2018, 14, 1370–1377, doi:10.3762/bjoc.14.115

• reported cage-box [11] is able to complex a plethora of aromatic compounds (e.g., anthracene, pyrene, perylene), while in the cases of several metallo-based cryptands the formation of layered host–guest supramolecular structures (with many guests in the cavity of the host) were reported [12][13][14][15

• 1 towards aromatic guests (anthracene, pyrene) in solution was observed and the formation of a cryptand–pyrene complex was revealed by cyclic voltammetry only after the adsorption of the cryptand on a graphite surface (electrode). In a more recent paper [33], authors who reobtained our cryptand 1

• pyrene, anthracene and 1,5-dihydroxynaphthalene as guest molecules was investigated by NMR titration experiments and molecular modelling. The spectra recorded during the NMR titrations of cryptand 2 with increasing amounts of the named guests (ratio 1:9 to 9:1), revealed only one set of signals. However