Bromination of endo-7-norbornene derivatives revisited: failure of a computational NMR method in elucidating the configuration of an organic structure

• Demet Demirci Gültekin,
• Arif Daştan,
• Yavuz Taşkesenligil,
• Cavit Kazaz,
• Yunus Zorlu and
• Metin Balci

Beilstein J. Org. Chem. 2023, 19, 764–770, doi:10.3762/bjoc.19.56

• configurational assignment of organic compounds. The experimental NMR data (13C NMR chemical shifts) are compared with those predicted for all possible theoretical stereoisomers. The correct stereochemistry may be obtained by combining the computed and experimental data [1]. Recently, Novitskiy and Kutateladze

Enolates ambushed – asymmetric tandem conjugate addition and subsequent enolate trapping with conventional and less traditional electrophiles

• Péter Kisszékelyi and
• Radovan Šebesta

Beilstein J. Org. Chem. 2023, 19, 593–634, doi:10.3762/bjoc.19.44

• were able to isolate product (+)-214 in good yield (75–85%) and excellent stereoselectivity (>95%) on a multigram scale. Additionally, both stereoisomers are available by simply using the ligand with the opposite stereochemistry. Pleuromutilin-based antibiotics are an essential line of defense in the

Access to cyclopropanes with geminal trifluoromethyl and difluoromethylphosphonate groups

• Ita Hajdin,
• Romana Pajkert,
• Mira Keßler,
• Jianlin Han,
• Haibo Mei and
• Gerd-Volker Röschenthaler

Beilstein J. Org. Chem. 2023, 19, 541–549, doi:10.3762/bjoc.19.39

• trans isomer (diastereomeric ratio 1.4:1). Moreover, although Int4 is the overall thermodynamic minimum of the reaction for all stereoisomers, it is still unsurprising that the reaction proceeds towards the product since the abstraction of the catalyst is the last step. Once abstracted, the catalyst is

• Int2 yielding Int4_3 and Int4_4 without further intermediates. Formation of the products Pr1 to Pr4. Optimization of the reaction conditionsa. Change in Gibbs free energy ΔG (kcal∙mol−1) from the CuI-catalyzed cyclopropanation of the diazo compound with styrene for possible stereoisomers Pr1 to Pr4

Strategies to access the [5-8] bicyclic core encountered in the sesquiterpene, diterpene and sesterterpene series

• Cécile Alleman,
• Charlène Gadais,
• Laurent Legentil and
• François-Hugues Porée

Beilstein J. Org. Chem. 2023, 19, 245–281, doi:10.3762/bjoc.19.23

• was not controlled, yielding a mixture of stereoisomers. Recent developments were undertaken to propose an asymmetric version [56][57]. In its intramolecular version, the NHK reaction was successfully applied by Kishi in 1989 to forge the cyclooctane ring of ophiobolin C (30) [5-8-5] framework, thus

Germacrene B – a central intermediate in sesquiterpene biosynthesis

• Houchao Xu and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2023, 19, 186–203, doi:10.3762/bjoc.19.18

• -cyclisation to the (Z,E)-germacradienyl cation (E) or a 1,11-cyclisation to the (Z,E)-humulyl cation (F), the E/Z stereoisomers of B and C. Furthermore, a 1,6-cyclisation to the bisabolyl cation (G) or a 1,7-cyclisation to H may follow, which is not possible from A because of its 2E configuration (a

• reprotonation at C-1 of 1, leading to four different stereoisomers of cation I, i.e., I1 with a trans-decalin skeleton, its enantiomer I2, I3 representing the cis-decalin skeleton, and its enantiomer I4 (Scheme 6A). In principle, the eudesmane skeleton can also be formed through cyclisations induced by

• reprotonation at C-4. Assuming anti addition to the C-4/C-5 double bond, these reactions lead to four stereoisomers of the secondary cation J, two with a trans-decalin skeleton (J1 and J2) and two with a cis-decalin skeleton (J3 and J4). However, no natural products are known that may arise through any of these

Identification and determination of the absolute configuration of amorph-4-en-10β-ol, a cadinol-type sesquiterpene from the scent glands of the African reed frog Hyperolius cinnamomeoventris

• Angelique Ladwig,
• Markus Kroll and
• Stefan Schulz

Beilstein J. Org. Chem. 2023, 19, 167–175, doi:10.3762/bjoc.19.16

• amorph-4-ene-10β-ol known from plants. A short synthesis using an organocatalytic approach through a tandem Mannich/intramolecular Diels–Alder reaction led to a mixture of cadinols, which was used for the assignment of the natural cadinol structures and their stereoisomers. Keywords: Anura; chiral gas

1,4-Dithianes: attractive C2-building blocks for the synthesis of complex molecular architectures

• Bram Ryckaert,
• Ellen Demeyere,
• Frederick Degroote,
• Hilde Janssens and
• Johan M. Winne

Beilstein J. Org. Chem. 2023, 19, 115–132, doi:10.3762/bjoc.19.12

• excess of a perbenzoic acid, as shown for the oxidation of 6 to 7 [33][34]. Partial oxidations are also possible, but lead to mixtures of sulfoxides, including cis- and trans-sulfoxide stereoisomers (see also chapter 6). For a more detailed and extensive discussion of the synthesis of 1,4-dithiin

Improving the accuracy of ³¹P NMR chemical shift calculations by use of scaling methods

• William H. Hersh and
• Tsz-Yeung Chan

Beilstein J. Org. Chem. 2023, 19, 36–56, doi:10.3762/bjoc.19.4

• ; stereoisomers; Introduction Calculation of 1H and 13C NMR chemical shifts and coupling constants using density functional theory (DFT) has increasingly become an adjunct to structure determination [1][2][3][4][5][6][7][8]. In particular for complex organic compounds, determination of relative stereochemistry

• . Calculated 31P NMR chemical shifts for stereoisomers and unusual structures. We next chose our own set of phosphorus compounds (Figure 5, 11–29; for simplicity compounds 30–34[O] discussed later are included in the MAD/RMSD values here). This was done to to determine if the calculation and scaling would be

• accurate enough to distinguish stereoisomers via chemical shifts rather than coupling constants [72][73] and provide confirmation of unusual structures and chemical shifts, and with the further stipulation that multiple P–C bonding would likely give inaccurate M06-2X NMR calculations (Table 3; results with

Preparation of an advanced intermediate for the synthesis of leustroducsins and phoslactomycins by heterocycloaddition

• Anaïs Rousseau,
• Guillaume Vincent and
• Cyrille Kouklovsky

Beilstein J. Org. Chem. 2022, 18, 1385–1395, doi:10.3762/bjoc.18.143

• pressure. Purification by column chromatography (5% Et2O/pentane), gave 19 as a colourless oil (866 mg, 94%, 91/9 mixture of stereoisomers). Analytical data were in agreement with literature data [18]. (2R,3S,6RS)-3-Ethyl-2-((E)-2-iodovinyl)-6-methoxy-3,6-dihydro-2H-pyran (20): This compound was prepared

Synthesis of tryptophan-dehydrobutyrine diketopiperazine and biological activity of hangtaimycin and its co-metabolites

• Houchao Xu,
• Anne Wochele,
• Minghe Luo,
• Gregor Schnakenburg,
• Yuhui Sun,
• Heike Brötz-Oesterhelt and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2022, 18, 1159–1165, doi:10.3762/bjoc.18.120

• well as the previously synthesised HTM222 (2) and 1 isolated from S. spectabilis. Neither 2 nor any of the stereoisomers of 4 showed antibacterial effects against a panel of Gram-positive and Gram-negative organisms (Supporting Information File 1, Table S2). Only 1 exhibited concentration-dependent

Electroreductive coupling of 2-acylbenzoates with α,β-unsaturated carbonyl compounds: density functional theory study on product selectivity

• Naoki Kise and
• Toshihiko Sakurai

Beilstein J. Org. Chem. 2022, 18, 956–962, doi:10.3762/bjoc.18.95

• Discussion The electroreduction of methyl 2-formylbenzoate (1a) with acrylonitrile (2a) was carried out in 0.3 M Bu4NClO4/THF in the presence of TMSCl at 0.1 A (2.5 F/mol). From the crude product, cyclized product 6a was obtained by column chromatography as a complex mixture of stereoisomers. Since compound

The stereochemical course of 2-methylisoborneol biosynthesis

• Binbin Gu,
• Anwei Hou and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2022, 18, 818–824, doi:10.3762/bjoc.18.82

• stereoisomers (5:2) that were separated by column chromatography (Scheme 2). Reduction of (E)-3 with DIBAl-H gave 2-methylgeraniol (4) that was converted under Sharpless conditions [36] into the epoxides (2R,3R)-5a using ᴅ-(−)-diisopropyl tartrate (DIPT) and (2S,3S)-5b with ʟ-(−)-DIPT. The enantiomeric purity

The asymmetric Henry reaction as synthetic tool for the preparation of the drugs linezolid and rivaroxaban

• Martin Vrbický,
• Karel Macek,
• Jaroslav Pochobradský,
• Jan Svoboda,
• Miloš Sedlák and
• Pavel Drabina

Beilstein J. Org. Chem. 2022, 18, 438–445, doi:10.3762/bjoc.18.46

• the starting aldehydes on the enantioselectivity of the Henry reaction was examined. Moreover, the resulting nitroaldols 22, 24, and 26 were formed as a pair of epimers, and therefore, a possible separation of the individual stereoisomers of these compounds was assumed. Hence, it should be noted that

• of stereoisomers that are easier to separate by standard techniques than enantiomers. In particular, an exploration of convenient chromatographic conditions was performed. Unfortunately, none of the conditions was successful even though all derivatives were tested. Subsequently, the separation of the

Synthetic strategies toward 1,3-oxathiolane nucleoside analogues

• Umesh P. Aher,
• Dhananjai Srivastava,
• Girij P. Singh and
• Jayashree B. S

Beilstein J. Org. Chem. 2021, 17, 2680–2715, doi:10.3762/bjoc.17.182

• ) appeared to be a more effective antiviral agent than AZT in PBM cells and U937 cells [13]. The BCH-189 core structure bears two stereocenters, and hence four stereoisomers are possible. The individual stereoisomers were also evaluated against HIV-1 activity in PBM cells and based on this study, it was

• found that out of four stereoisomers, the β-configured ʟ-(−)-enantiomer 1 (EC50 = 0.02 µM) is more potent in primary human lymphocytes than the β-configured ᴅ-(+)-enantiomer 1a (EC50 = 0.2 µM) in CEM cells [14]. Similarly, the 5-fluoro-substituted analogue of cytidine, i.e., β-configured ʟ

Phenolic constituents from twigs of Aleurites fordii and their biological activities

• Kyoung Jin Park,
• Won Se Suh,
• Da Hye Yoon,
• Chung Sub Kim,
• Sun Yeou Kim and
• Kang Ro Lee

Beilstein J. Org. Chem. 2021, 17, 2329–2339, doi:10.3762/bjoc.17.151

• on NO production and the stereoisomers 2 and 5 demonstrated the difference in activity according to the configuration. Compounds 8 and 16 exhibited neuroprotection effects. Thus, this study indicates that the active phenolic compounds from A. fordii would be potential candidates for drug discovery

Cationic oligonucleotide derivatives and conjugates: A favorable approach for enhanced DNA and RNA targeting oligonucleotides

• Mathias B. Danielsen and
• Jesper Wengel

Beilstein J. Org. Chem. 2021, 17, 1828–1848, doi:10.3762/bjoc.17.125

• to create an epimeric mixture of the dinucleotide phosphoramidate-linked derivatives with subsequent separation of the two stereoisomers. These were then incorporated into the desired ONs after O3’-desilylation and phosphitylation of the dimers [107]. The authors found that for each of the sequences

Double-headed nucleosides: Synthesis and applications

• Vineet Verma,
• Jyotirmoy Maity,
• Vipin K. Maikhuri,
• Ritika Sharma,
• Himal K. Ganguly and
• Ashok K. Prasad

Beilstein J. Org. Chem. 2021, 17, 1392–1439, doi:10.3762/bjoc.17.98

N-tert-Butanesulfinyl imines in the asymmetric synthesis of nitrogen-containing heterocycles

• Joseane A. Mendes,
• Paulo R. R. Costa,
• Miguel Yus,
• Francisco Foubelo and
• Camilla D. Buarque

Beilstein J. Org. Chem. 2021, 17, 1096–1140, doi:10.3762/bjoc.17.86

• models were proposed to rationalize organometallic additions to N-sulfinyl imines. The mechanism for obtaining these two stereoisomers was elucidated in the work published by Andersen and co- workers [36]. The origin of the reversal of the diastereofacial selectivity on the change of reducing agents is

Identification of volatiles from six marine Celeribacter strains

• Anuj Kumar Chhalodia,
• Jan Rinkel,
• Dorota Konvalinkova,
• Jörn Petersen and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2021, 17, 420–430, doi:10.3762/bjoc.17.38

• ·OEt2-catalyzed reaction of bis(benzothiazol-2-yl)disulfane with dimethyl disulfide, giving access to 41 with a yield of 64% (Scheme 2). The synthetic compound 41 showed an identical mass spectrum and retention index compared to the volatile in the Celeribacter extracts. The Z and E stereoisomers of 42

• were obtained by the Michael addition of NaSMe to ethyl propiolate (45), yielding a mixture of stereoisomers inseparable by silica gel column chromatography (92%). The major stereoisomer was found to be (Z)-42 (dr 94:6), whose preferred formation may be a result of a chalcogen–chalcogen interaction

• between the sulfur and an ester oxygen. This phenomenon was first described in supramolecular structures by Gleiter [59] and later also used to explain the outcome of organocatalytic reactions [60]. The pure stereoisomers of 42 were isolated by preparative HPLC, for which the best separation was achieved

Diels–Alder reaction of β-fluoro-β-nitrostyrenes with cyclic dienes

• Savva A. Ponomarev,
• Roman V. Larkovich,
• Alexander S. Aldoshin,
• Andrey A. Tabolin,
• Sema L. Ioffe,
• Jonathan Groß,
• Till Opatz and
• Valentine G. Nenajdenko

Beilstein J. Org. Chem. 2021, 17, 283–292, doi:10.3762/bjoc.17.27

• and stereoisomers, respectively) 3d in 40% overall yield. Two pairs of regioisomers were partially separated by column chromatography with sufficiently slow elution and analyzed by 1H NMR spectroscopy. The structure assignment was made as depicted in Scheme 5. The structures of two pairs of

The preparation and properties of 1,1-difluorocyclopropane derivatives

• Kymbat S. Adekenova,
• Peter B. Wyatt and
• Sergazy M. Adekenov

Beilstein J. Org. Chem. 2021, 17, 245–272, doi:10.3762/bjoc.17.25

Progress in the total synthesis of inthomycins

• Bidyut Kumar Senapati

Beilstein J. Org. Chem. 2021, 17, 58–82, doi:10.3762/bjoc.17.7

• racemic form (92% yield). The stannane (Z)-(rac)-43 was then subjected to Stille coupling with iodide (E,E)-36b (3:1 mixture of stereoisomers, 3 equiv) using Pd(CH3CN)2Cl2/DMF conditions to produce a 3:1 mixture of (Z,Z,E):(Z,E,E) triene products (rac)-12a and (rac)-12c in 72% yield after 10 h reaction

• produce a 1.2:1 mixture of (Z,Z,E):(Z,E,E) triene products (rac)-12a and (rac)-12c in 74% yield. The stereoisomers (rac)-12a and (rac)-12c were found to be inseparable by chromatography. The isomerically pure bromide (Z)-38 was found to be inert to coupling with vinylstannane (rac)-43 under standard

• transformed into (−)-101 using a three-step sequence. Upon iodination of (−)-101 produced iodide (+)-102 in excellent yield. Deiodination of (+)-102 followed by regioselective dihydroxylation with Sharpless’ AD mix-β reagent [64][65] provided diol (−)-103 as a mixture of stereoisomers. Significantly, the diol

Ring-closing metathesis of prochiral oxaenediynes to racemic 4-alkenyl-2-alkynyl-3,6-dihydro-2H-pyrans

• Viola Kolaříková,
• Markéta Rybáčková,
• Martin Svoboda and
• Jaroslav Kvíčala

Beilstein J. Org. Chem. 2020, 16, 2757–2768, doi:10.3762/bjoc.16.226

• 46 and 76 kJ/mol. From the activation free Gibbs energy results that two main stereoisomers should be formed, namely the endo-trans 14B (99%) and the exo-cis 14C (1%). The difference among the computed (99% and 1%) and experimentally observed values (29% and 16%) can be explained by a participation

• of other conformations, a lower accuracy of pure functional used, and an incompleteness of the double zeta basis set. The structures of the corresponding transition states 15B, 15C are depicted in Figure 7, and the relative free Gibbs energies of all saddle points for all four stereoisomers are shown

A consensus-based and readable extension of Linear Code for Reaction Rules (LiCoRR)

• Benjamin P. Kellman,
• Yujie Zhang,
• Emma Logomasini,
• Eric Meinhardt,
• Karla P. Godinez-Macias,
• Austin W. T. Chiang,
• James T. Sorrentino,
• Chenguang Liang,
• Bokan Bao,
• Yusen Zhou,
• Sachiko Akase,
• Isami Sogabe,
• Thukaa Kouka,
• Elizabeth A. Winzeler,
• Iain B. H. Wilson,
• Matthew P. Campbell,
• Sriram Neelamegham,
• Frederick J. Krambeck,
• Kiyoko F. Aoki-Kinoshita and
• Nathan E. Lewis

Beilstein J. Org. Chem. 2020, 16, 2645–2662, doi:10.3762/bjoc.16.215

• structure rules are set to differentiate the stereoisomers or distinct ring structures. A change from primary to secondary stereospecificity is denoted by “ ’ ”, while a change to secondary ring structure is denoted “ ^ ”. A change to both secondary ring and stereospecificity is denoted “ ~ ”. For example

Synthesis of novel fluorinated building blocks via halofluorination and related reactions

• Attila Márió Remete,
• Tamás T. Novák,
• Melinda Nonn,
• Matti Haukka,
• Ferenc Fülöp and
• Loránd Kiss

Beilstein J. Org. Chem. 2020, 16, 2562–2575, doi:10.3762/bjoc.16.208

• that of the corresponding stereoisomers, it is more likely that the epimerization occurs after the formation of (rac)-T10. Concerning (rac)-8a and 8b as well as (rac)-11a and 11b, the reagent preference was exactly the opposite: DBU in THF under reflux was effective, while t-BuOK in THF under reflux