Aromatic C–H bond functionalization through organocatalyzed asymmetric intermolecular aza-Friedel–Crafts reaction: a recent update

• Anup Biswas

Beilstein J. Org. Chem. 2023, 19, 956–981, doi:10.3762/bjoc.19.72

• –Crafts reaction. Reaction between indoles and racemic 2,3-dihydroisoxazol-3-ol derivatives. Exploiting 5-aminoisoxazoles as nucleophiles. Reaction between unsubstituted indoles and 3-alkynylated 3-hydroxy-1-oxoisoindolines. Synthesis of unnatural amino acids bearing an aza-quaternary stereocenter

Photoredox catalysis enabling decarboxylative radical cyclization of γ,γ-dimethylallyltryptophan (DMAT) derivatives: formal synthesis of 6,7-secoagroclavine

• Alessio Regni,
• Francesca Bartoccini and
• Giovanni Piersanti

Beilstein J. Org. Chem. 2023, 19, 918–927, doi:10.3762/bjoc.19.70

• requires a multistep process in conventional chemical synthesis [39][40][41]. Among the various widely available and abundant substrates for photocatalyzed reactions, natural and unnatural α-amino acids play a very important role, given their paramount importance across several chemistry fields as well as

• their ability to participate in either redox step of the catalytic cycle [42][43][44][45]. For example, the main use of α-amino acids in syntheses via photoredox catalysis is as readily available precursors of regioselective α-amino radicals by decarboxylative transformations, by oxidation of the

• carboxylate anion and/or reduction of the corresponding N-hydroxyphthalimide- (NHPI)-derived redox-active ester, although it destroys their stereochemical information [46][47][48][49][50][51]. In addition, the side-chains of aromatic amino acids (mainly electron-rich tryptophan and tyrosine) can be

Pyridine C(sp²)–H bond functionalization under transition-metal and rare earth metal catalysis

• Haritha Sindhe,
• Malladi Mounika Reddy,
• Karthikeyan Rajkumar,
• Akshay Kamble,
• Amardeep Singh,
• Anand Kumar and
• Satyasheel Sharma

Beilstein J. Org. Chem. 2023, 19, 820–863, doi:10.3762/bjoc.19.62

• functionalizations under ligand-controlled conditions are underexplored. Hence, differentiating from this co-coordinative model, in 2013, Zeng and co-workers [86] reported the MPAA (mono-N-protected amino acids) ligand-promoted non-chelate-assisted C–H activation via Pd-catalyzed dehydrogenative Heck reactions on

Palladium-catalyzed enantioselective three-component synthesis of α-arylglycine derivatives from glyoxylic acid, sulfonamides and aryltrifluoroborates

• Bastian Jakob,
• Nico Schneider,
• Luca Gengenbach and
• Georg Manolikakes

Beilstein J. Org. Chem. 2023, 19, 719–726, doi:10.3762/bjoc.19.52

• products. Keywords: amino acids; asymmetric catalysis; multicomponent reaction; palladium catalysis; Petasis reaction; sulfonamides; Introduction α-Amino acids play a crucial role in every aspect of our human life [1]. They are important synthetic intermediates in the chemical industry and used for the

• production of drugs, fertilizers, (biodegradable) polymers or nutritional supplements [2]. More importantly, α-amino acids form the backbone of all proteins and enzymes are therefore essential for almost all biological processes. In the last twenty years non-proteinogenic and chemically synthesized unnatural

• amino acids received increasing attention due to advances in protein-engineering and the development of protein-based therapeutics [3][4]. Among the different types of non-proteinogenic and unnatural amino acids, α-arylglycines play a particular important role. The arylglycine scaffold can be found in

A new oxidatively stable ligand for the chiral functionalization of amino acids in Ni(II)–Schiff base complexes

• Alena V. Dmitrieva,
• Oleg A. Levitskiy,
• Yuri K. Grishin and
• Tatiana V. Magdesieva

Beilstein J. Org. Chem. 2023, 19, 566–574, doi:10.3762/bjoc.19.41

• testing; Introduction Asymmetric synthesis of functionalized amino acids is a subject of intense research because these compounds are of great demand for pharmaceutical industry, health care, and food production [1][2][3]. Various approaches to enantiomerically enriched amino acids have been developed

• chirality which exhibits no racemization under action of strong bases [29]. The chiral N–H-containing rimantadine-based ligand (L6) is highly lipophilic and it was successfully used for the kinetic resolution of unprotected racemic amino acids [30]. The examples mentioned above show that the metal–Schiff

• base chiral template is a fairly versatile “tool” that can be adapted to a specific task. A relatively new approach to functionalization of amino acids is a combination of a stereoselective synthesis in a metal-coordination environment with electrochemical activation [31]. It increases the reactivity

Phenanthridine–pyrene conjugates as fluorescent probes for DNA/RNA and an inactive mutant of dipeptidyl peptidase enzyme

• Josipa Matić,
• Tana Tandarić,
• Marijana Radić Stojković,
• Filip Šupljika,
• Zrinka Karačić,
• Ana Tomašić Paić,
• Lucija Horvat,
• Robert Vianello and
• Lidija-Marija Tumir

Beilstein J. Org. Chem. 2023, 19, 550–565, doi:10.3762/bjoc.19.40

• three amino acids. DPPIII participates in intracellular protein catabolism, which functions in pain modulation and oxidative stress. These biological functions make DPPIII a valuable target for drug development. Interestingly, although excimer emission was quenched, the pyrene monomer's emission was

• (4.5 g/L) Dulbecco's Modified Eagle's Medium (DMEM, Sigma Aldrich) with the addition of 10% fetal bovine serum (FBS), 1% non-essential amino acids and 1% antibiotic/antimycotic solution (all chemicals were purchased by Capricorn Scientific GmbH). The cells were kept at 37 °C and 5% CO2 in a Heracell

Dipeptide analogues of fluorinated aminophosphonic acid sodium salts as moderate competitive inhibitors of cathepsin C

• Karolina Wątroba,
• Małgorzata Pawełczak and
• Marcin Kaźmierczak

Beilstein J. Org. Chem. 2023, 19, 434–439, doi:10.3762/bjoc.19.33

• . The reactions should proceed with high yields, and any byproducts should be easily removeable. Results and Discussion Dipeptide analogues of α- and β-fluorinated aminophosphonates 5 and 7 were obtained from the corresponding ʟ-amino acids [23][24] 1. In the key step of the synthesis fluorine was

• similar structural requirements, bovine cathepsin C is often used in research as a model for human cathepsin C as it was well documented by Poręba et al. [34] in the study of the substrate specificity of these two mammalian cathepsins. They showed the best fit of amino acids with larger side to the S1

• pocket of the enzyme. In contrast, the S2 pocket preferably accommodates amino acids having short aliphatic side-chains, but also recognizes aromatic amino acids, preferably phenylalanine. To study the structural requirements of the S1 binding site of the enzyme, we synthesized a series of ten dipeptide

Strategies to access the [5-8] bicyclic core encountered in the sesquiterpene, diterpene and sesterterpene series

• Cécile Alleman,
• Charlène Gadais,
• Laurent Legentil and
• François-Hugues Porée

Beilstein J. Org. Chem. 2023, 19, 245–281, doi:10.3762/bjoc.19.23

NaI/PPh₃-catalyzed visible-light-mediated decarboxylative radical cascade cyclization of N-arylacrylamides for the efficient synthesis of quaternary oxindoles

• Dan Liu,
• Yue Zhao and
• Frederic W. Patureau

Beilstein J. Org. Chem. 2023, 19, 57–65, doi:10.3762/bjoc.19.5

• is mediated by visible light irradiation. A wide range of substrates bearing different substituents and derived from ubiquitous carboxylic acids, including α-amino acids, were synthesized and examined under this very mild, efficient, and cost effective transition-metal-free synthetic method. These

• -active ester derived from methionine could be converted effectively to α-aminoalkylation product 3al in overall 70% yield, which thus provides a mild method for the functionalization and derivation of abundant natural or unnatural amino acids. Some functional groups such as a terminal alkene in 3am, a

Digyalipopeptide A, an antiparasitic cyclic peptide from the Ghanaian Bacillus sp. strain DE2B

• Adwoa P. Nartey,
• Aboagye K. Dofuor,
• Kofi B. A. Owusu,
• Anil S. Camas,
• Hai Deng,
• Marcel Jaspars and
• Kwaku Kyeremeh

Beilstein J. Org. Chem. 2022, 18, 1763–1771, doi:10.3762/bjoc.18.185

• Tables S1 and S2 in Supporting Information File 1. The addition of carbonyl carbon HMBC data gave the complete amino acids which were further sequenced using LC–HRESIMSn sequence tag data. The 1H NMR data also showed the presence of diastereotopic methylene protons at δH 2.41, 2.38 (ov., 2H, H-38) which

• acid and the elaborate system of aliphatic side chains, the sequence tag ions generated by systematic loss of amino acids were each subjected to several facile losses of H2O, –CH3, –C2H2O and CO resulting in the generation of several peaks in the LC–HRESIMSn spectrum. The b and y ion fragmentation

• novo total synthesis or degradation. This is because in natural product peptides both the ᴅ- and ʟ-forms of the different amino acids may be incorporated into the peptide structure. In order to determine the regiochemistry of the Val, Leu, Asp, and Glu amino acid residues in compound 1, we deployed the

Navigating and expanding the roadmap of natural product genome mining tools

• Friederike Biermann,
• Sebastian L. Wenski and
• Eric J. N. Helfrich

Beilstein J. Org. Chem. 2022, 18, 1656–1671, doi:10.3762/bjoc.18.178

• computationally cost-effective characterization of genomic data [43]. Hidden Markov Models (HMMs) are statistical models that are used by the NP community as a more flexible approach to identify BGCs (Figure 4). These models consist of a sequence of “states” (e.g., the occurrences of specific amino acids or

Synthesis of (−)-halichonic acid and (−)-halichonic acid B

• Keith P. Reber and
• Emma L. Niner

Beilstein J. Org. Chem. 2022, 18, 1629–1635, doi:10.3762/bjoc.18.174

• Keith P. Reber Emma L. Niner Department of Chemistry, Towson University, 8000 York Road, Towson, MD, 21252, USA 10.3762/bjoc.18.174 Abstract The first syntheses of the amino acids (–)-halichonic acid and (–)-halichonic acid B have been achieved in ten steps starting from commercially available

• hydrolysis of compounds 8 and 9 to form the corresponding amino acids. Thus, treating bicycle 8 with aqueous lithium hydroxide resulted in hydrolysis of the ethyl ester, and subsequent neutralization with pH 7 phosphate buffer afforded halichonic acid ((−)-1) in 88% yield after purification by column

One-pot double annulations to confer diastereoselective spirooxindolepyrrolothiazoles

• Juan Lu,
• Bin Yao,
• Desheng Zhan,
• Zhuo Sun,
• Yun Ji and
• Xiaofeng Zhang

Beilstein J. Org. Chem. 2022, 18, 1607–1616, doi:10.3762/bjoc.18.171

• one-pot reactions were also developed by Zhang using the 4-aminoquinoline synthesis, for example, in amino acids(esters)-based [3 + 2] cycloadditions [38][39][40][41][42][43][44][45][46][47][48] and in the synthesis of pyrrolidine-containing systems [49][50][51][52][53][54][55][56][57][58][59

Solid-phase total synthesis and structural confirmation of antimicrobial longicatenamide A

• Takumi Matsumoto,
• Takefumi Kuranaga,
• Yuto Taniguchi,
• Weicheng Wang and
• Hideaki Kakeya

Beilstein J. Org. Chem. 2022, 18, 1560–1566, doi:10.3762/bjoc.18.166

• . pulmonis TP-B0596 [8]. The planar structures were determined by analyzing two-dimensional (2D) nuclear magnetic resonance (NMR) spectra and mass spectrometry (MS) data, and the absolute configurations of their component amino acids were elucidated by using highly sensitive reagents that we recently

Make or break: the thermodynamic equilibrium of polyphosphate kinase-catalysed reactions

• Michael Keppler,
• Sandra Moser,
• Henning J. Jessen,
• Christoph Held and
• Jennifer N. Andexer

Beilstein J. Org. Chem. 2022, 18, 1278–1288, doi:10.3762/bjoc.18.134

• fractions [5][10][15][16]. Based on the crystal structures of three PPK2-III, the coordination of polyP and ADP by positively charged amino acids (lysine and arginine) has been suggested [16][17]. Two magnesium ions are held in place by two conserved aspartate residues that further coordinate the polyP and

A one-pot electrochemical synthesis of 2-aminothiazoles from active methylene ketones and thioureas mediated by NH₄I

• Shang-Feng Yang,
• Pei Li,
• Zi-Lin Fang,
• Sen Liang,
• Hong-Yu Tian,
• Bao-Guo Sun,
• Kun Xu and
• Cheng-Chu Zeng

Beilstein J. Org. Chem. 2022, 18, 1249–1255, doi:10.3762/bjoc.18.130

• with thioureas [42]. However, the reported method only tolerates aromatic and aliphatic ketones; the active methylene ketones were not suitable. Given that amino acids have been reported to work as green organocatalysts for the synthesis of 2-aminothiazole heterocycles [43][44]. We herein report a ᴅʟ

Derivatives of benzo-1,4-thiazine-3-carboxylic acid and the corresponding amino acid conjugates

• Péter Kisszékelyi,
• Tibor Peňaška,
• Klára Stankovianska,
• Mária Mečiarová and
• Radovan Šebesta

Beilstein J. Org. Chem. 2022, 18, 1195–1202, doi:10.3762/bjoc.18.124

• isolated. Moreover, the coupling of benzothiazines with amino acids was realized. In doing so, an enantioselective synthesis of the nonproteinogenic amino acid 2-amino-3-propylhexanoic acid was accomplished. Keywords: amino acid; benzothiazine; oxidative dimerization; peptide coupling; stereoselective

• protease inhibitors. Given the potential usefulness of the benzothiazine scaffold as a biologically active unit and the peptidomimetic nature of many SARS-CoV-2 protease inhibitors [35], we decided to investigate the viability of attaching a 4H-benzo[b][1,4]thiazine-3-carboxylic core to amino acids

• the amino acids. However, these reactions proved to be unsuccessful due to the high reactivity of the bromo derivative. On the contrary, coupling of the less reactive amides formed from pyruvic acid and the amino acids 16a and 16b was accomplished (Scheme 5a), and several different conditions were

Reductive opening of a cyclopropane ring in the Ni(II) coordination environment: a route to functionalized dehydroalanine and cysteine derivatives

• Oleg A. Levitskiy,
• Olga I. Aglamazova,
• Yuri K. Grishin and
• Tatiana V. Magdesieva

Beilstein J. Org. Chem. 2022, 18, 1166–1176, doi:10.3762/bjoc.18.121

• acids. One-pot combination of the reductive ring opening and subsequent addition of thiols allows obtaining the cysteine derivatives in practical yields and with high stereoselectivity at the removed β-stereocenter. Keywords: amino acids; cathodic cyclopropane opening; cysteine derivatives; Ni–Schiff

• construction of complex multifunctional molecules [3][4][5][6][7][8]. Recently, we elaborated a versatile electrochemical approach for the stereoselective functionalization of a side chain of amino acids involved in the Ni(II) chiral coordination environment [9][10][11][12][13][14][15]. A combination of redox

• -activity and chirality provided by the Ni–Schiff base template, supported with the protection from redox-destruction of the amino acid skeleton, makes the suggested approach a convenient route to various types of non-proteinogenic amino acids [9][10][12][13]. Recently, several practical approaches to α,α

On Reuben G. Jones synthesis of 2-hydroxypyrazines

• Pierre Legrand and
• Yves L. Janin

Beilstein J. Org. Chem. 2022, 18, 935–943, doi:10.3762/bjoc.18.93

• would be the hydrolysis of the α-aminoamides and the resulting α-amino acids would also be water-soluble. For these reasons, a low temperature as well as a plausibly softer base (i.e., tetraalkylammonium hydroxides) would be key parameters to alleviate the impact of these side reactions. These would

Synthesis of bis-spirocyclic derivatives of 3-azabicyclo[3.1.0]hexane via cyclopropene cycloadditions to the stable azomethine ylide derived from Ruhemann's purple

• Alexander S. Filatov,
• Olesya V. Khoroshilova,
• Anna G. Larina,
• Vitali M. Boitsov and
• Alexander V. Stepakov

Beilstein J. Org. Chem. 2022, 18, 769–780, doi:10.3762/bjoc.18.77

• been explored [19][20][21][22][23][24]. To generate azomethine ylides, we used a classical method based on the reaction of cyclic carbonyl compounds with α-amino acids. Μono-, bi-, and tetracyclic carbonyl compounds were utilized in these studies. 1,3-Dipolar cycloaddition of cyclopropenes to

• azomethine ylides generated from primary or secondary α-amino acids and carbonyl compounds such as alloxan, isatin, tryptanthrin, and 11H-indeno[1,2-b]quinoxalin-11-one were performed in a multicomponent fashion [19][20][21][24]. In these reactions, the azomethine ylides generated in situ are highly reactive

Identification of the new prenyltransferase Ubi-297 from marine bacteria and elucidation of its substrate specificity

• Jamshid Amiri Moghaddam,
• Huijuan Guo,
• Karsten Willing,
• Thomas Wichard and
• Christine Beemelmanns

Beilstein J. Org. Chem. 2022, 18, 722–731, doi:10.3762/bjoc.18.72

• ], chlorophyll synthases (EC 2.5.1.62, G7) [24] or homogentisate Ptases (EC 2.5.1.117, G8) [25], were found within the investigated genomes of Flavobacteria and Saccharomonospora representatives. A Ptase (UbiA-297) which was putatively assigned as an aromatic Ptase of the G2 UbiA-like family (299 amino acids

BINOL as a chiral element in mechanically interlocked molecules

• Matthias Krajnc and
• Jochen Niemeyer

Beilstein J. Org. Chem. 2022, 18, 508–523, doi:10.3762/bjoc.18.53

• amino acids N-Boc-leucine, N-Boc-proline, and N-Boc-tryptophane were used. Overall, rotaxane 64a shows lower association constants (K = 138–2589 M−1) with preference for the (R)-isomers of the guest molecules (K(S)/K(R) = 0.29–0.66). In contrast, rotaxane 64b preferentially binds the (S)-isomers (K(S)/K

Menadione: a platform and a target to valuable compounds synthesis

• Acácio S. de Souza,
• Ruan Carlos B. Ribeiro,
• Dora C. S. Costa,
• Fernanda P. Pauli,
• David R. Pinho,
• Matheus G. de Moraes,
• Fernando de C. da Silva,
• Luana da S. M. Forezi and
• Vitor F. Ferreira

Beilstein J. Org. Chem. 2022, 18, 381–419, doi:10.3762/bjoc.18.43

• ][139][140][141]. In 2001, Salmon-Chemin and co-workers described the preparation of alkylated compounds 89 and 90 via oxidative decarboxylation of diacids and N-Boc-protected amino acids β-alanine, γ-aminobutyric acid, 5-aminovaleric acid, and 6-aminocaproic acid [131]. The compounds were obtained in

• studies developed by Naturale’s group, α-, β-, and γ-amino acids of linear and branched chains were used, as well as different amine protection groups (Table 5). The results revealed that the functionalization of naphthoquinones by a radical addition of decarboxylated α-, β- and γ-N-protected amino acids

• outcome, although electronic effects can be considered to play a role, especially with substituted α-amino acids. Lanfranchi and co-workers also studied the menadione (10) alkylation by oxidative decarboxylation using carboxylic acids containing nitrogenous heterocycles as substituents, and achieved very

Synthesis of piperidine and pyrrolidine derivatives by electroreductive cyclization of imine with terminal dihaloalkanes in a flow microreactor

• Yuki Naito,
• Naoki Shida and
• Mahito Atobe

Beilstein J. Org. Chem. 2022, 18, 350–359, doi:10.3762/bjoc.18.39

• time, extremely fast molecular diffusion, and expelling the reaction product to avoid over-oxidation or over-reduction. We have previously reported the electrochemical carboxylation of several imines in a flow microreactor to afford the corresponding α-amino acids in good to moderate yields [33][34][35

Synthesis and late stage modifications of Cyl derivatives

• Phil Servatius and
• Uli Kazmaier

Beilstein J. Org. Chem. 2022, 18, 174–181, doi:10.3762/bjoc.18.19

• digest and metabolic processes [3]. Furthermore, cyclization generally helps to fix the active conformation of a peptide needed to interact with the respective cellular target. Incorporation of non-proteinogenic and unusual amino acids often is related to their biological function. For example, trapoxin

• and Discussion Since a couple of years the focus of our research group is on the synthesis of unnatural amino acids and their incorporation into complex natural products. Many of these show interesting anticancer activities [26][27][28]. Some linear peptides, such as pretubulysin bind to tubulin [29