A new route for the synthesis of 1-deazaguanine and 1-deazahypoxanthine

• Raphael Bereiter,
• Marco Oberlechner and
• Ronald Micura

Beilstein J. Org. Chem. 2022, 18, 1617–1624, doi:10.3762/bjoc.18.172

• -1-deazapurine [16], the key reactions are copper-catalyzed benzyl ether formation and site-specific nitration. The application of protecting groups was necessary for reasons of solubility and to improve selectivity. The obtained heterocycles may serve as core compound for further structural

Preparation of β-cyclodextrin-based dimers with selectively methylated rims and their use for solubilization of tetracene

• Konstantin Lebedinskiy,
• Volodymyr Lobaz and
• Jindřich Jindřich

Beilstein J. Org. Chem. 2022, 18, 1596–1606, doi:10.3762/bjoc.18.170

• functionalizing these molecules, for example, by inserting some protecting groups. Substituted heptacenes demonstrate remarkable stability and exceptional electric properties. Nevertheless, studying the properties of unsubstituted acenes is also essential. We guessed that some increase in solubility of acene

Solid-phase total synthesis and structural confirmation of antimicrobial longicatenamide A

• Takumi Matsumoto,
• Takefumi Kuranaga,
• Yuto Taniguchi,
• Weicheng Wang and
• Hideaki Kakeya

Beilstein J. Org. Chem. 2022, 18, 1560–1566, doi:10.3762/bjoc.18.166

• synthesis. Third, the peptide chain was cyclized in the solution phase, followed by simultaneous cleavage of all protecting groups to afford longicatenamide A. Chromatographic analysis corroborated the chemical structure of longicatenamide A. Furthermore, the antimicrobial activity of synthesized

• chemical communication. The retrosynthesis of peptide 1 is displayed in Scheme 1. First, the cyclic peptide 1 was linearized by retrosynthesis, and acid-labile protecting groups were attached onto the reactive side chain. The biomimetic synthesis of cyclic peptides often enables efficient synthesis [12][13

• 29. Then, five rounds of DIC/Oxyma-mediated amidation [22] and Nα-deprotection with piperidine led to resin-bound peptide 5. Treatment of 5 with TFA/CH2Cl2 1:99 released 30 into the solution without unmasking the acid-labile protecting groups of the side chains. Subsequently, peptide 30 was cyclized

1,4,6,10-Tetraazaadamantanes (TAADs) with N-amino groups: synthesis and formation of boron chelates and host–guest complexes

• Artem N. Semakin,
• Ivan S. Golovanov,
• Yulia V. Nelyubina and
• Alexey Yu. Sukhorukov

Beilstein J. Org. Chem. 2022, 18, 1424–1434, doi:10.3762/bjoc.18.148

• carbazates. In the synthesis of product 3a the intermediate α-chlorohydrazone 9a was not isolated. The preparation of mixed oxime-hydrazones 5 and 7 was more challenging as it required a modular synthetic approach and the use of protecting groups. The developed synthetic route starting from benzylamine is

Preparation of an advanced intermediate for the synthesis of leustroducsins and phoslactomycins by heterocycloaddition

• Anaïs Rousseau,
• Guillaume Vincent and
• Cyrille Kouklovsky

Beilstein J. Org. Chem. 2022, 18, 1385–1395, doi:10.3762/bjoc.18.143

• diastereomers. Therefore, we decided to oxidize the acetal in 23 to the corresponding lactone (Scheme 9). The acetal was first hydrolyzed to the hemiacetal 24 in quantitative yield. Oxidation of 24 proved delicate due to the lability of the tertiary allylic alcohol, and the presence of acid-sensitive protecting

• groups. Several conditions were tested: silver oxide on celite [33] failed to give any conversion. PCC with sodium acetate [34] gave only traces of the target lactone 25. However, the use of the Jones’ reagent gave reproducible yields of 25, together with the deprotected alcohol 26. Under optimized

Synthesis of C6-modified mannose 1-phosphates and evaluation of derived sugar nucleotides against GDP-mannose dehydrogenase

• Sanaz Ahmadipour,
• Alice J. C. Wahart,
• Jonathan P. Dolan,
• Laura Beswick,
• Chris S. Hawes,
• Robert A. Field and
• Gavin J. Miller

Beilstein J. Org. Chem. 2022, 18, 1379–1384, doi:10.3762/bjoc.18.142

• diffuse intermolecular C–H···O contacts involving the phosphate and acetyl oxygen atoms. Deprotection of 16 was completed in two steps, first using hydrogenolysis with Adam’s catalyst (PtO2), followed by removal of the acetate protecting groups with Et3N/H2O/MeOH, and furnished the target glycosyl 1

A versatile way for the synthesis of monomethylamines by reduction of N-substituted carbonylimidazoles with the NaBH₄/I₂ system

• Lin Chen,
• Xuan Zhou,
• Zhiyong Chen,
• Changxu Wang,
• Shunjie Wang and
• Hanbing Teng

Beilstein J. Org. Chem. 2022, 18, 1032–1039, doi:10.3762/bjoc.18.104

• particularly suitable for peptide chemistry since protecting groups are often required in peptide synthesis [52][53]. These multistep reaction methods are conducive to avoid overmethylation products. Although procedures for the synthesis of monomethylamines have been developed over the past years, the starting

First series of N-alkylamino peptoid homooligomers: solution phase synthesis and conformational investigation

• Maxime Pypec,
• Laurent Jouffret,
• Claude Taillefumier and
• Olivier Roy

Beilstein J. Org. Chem. 2022, 18, 845–854, doi:10.3762/bjoc.18.85

• acylation conditions in solution (Scheme 1) allowed us to reach the pentamer length with good yields for each substitution–acylation submonomer cycle (from 56 to 76% yield, Supporting Information File 1, Scheme S1). All compounds were acetylated at the N-terminus followed by removal of the Boc protecting

• groups to obtain peptoids 1–5 with high purity at the scale of several hundred milligrams (Table 1). Synthesis details are provided in Supporting Information File 1, along with analysis data. The main limitation of this synthetic route is the somewhat delicate purification of the products after the

Copper-catalyzed multicomponent reactions for the efficient synthesis of diverse spirotetrahydrocarbazoles

• Shao-Cong Zhan,
• Ren-Jie Fang,
• Jing Sun and
• Chao-Guo Yan

Beilstein J. Org. Chem. 2022, 18, 796–808, doi:10.3762/bjoc.18.80

• , substrates with a differently substituted indole ring or with different protecting groups on the indole N-1 position (2f, 2g). All substrates reacted smoothly to give the corresponding products in moderate to good yields and with high stereoselectivity. It should be pointed out that the minor products 2a’–e

Tosylhydrazine-promoted self-conjugate reduction–Michael/aldol reaction of 3-phenacylideneoxindoles towards dispirocyclopentanebisoxindole derivatives

• Sayan Pramanik and
• Chhanda Mukhopadhyay

Beilstein J. Org. Chem. 2022, 18, 469–478, doi:10.3762/bjoc.18.49

• , 3o, 3q, 3s, 3t and 3x) gave a good yield of the corresponding product, respectively. Here also, the halo-substituted aryl ring on 1 can be further used for transition-metal-catalyzed cross coupling reactions, thus providing a very good application. Then the effect of N-protecting groups on the

Site-selective reactions mediated by molecular containers

• Rui Wang and
• Yang Yu

Beilstein J. Org. Chem. 2022, 18, 309–324, doi:10.3762/bjoc.18.35

• rather hard to just reduce only one site in the presence of the others. Protecting groups are widely used to prevent reaction of one or more functional groups and let others to react [55][56][57]. Generally, protecting groups are covalently connected to the targeted groups, which requires

• prefunctionalization and deprotection synthetic procedures. Based on the logical concept of protecting groups, noncovalent interactions can be considered, because they can be built up in situ and are weak enough to let the substrate dissociate from the “protecting template” easily, omitting the complicated

• prefunctionalization and deprotection processes. Moreover, functional groups that are not suitable for being functionalized with protecting groups can also be incorporated into the noncovalent protective systems. Actually, the molecular container has been applied to work as a noncovalent protective module. In this

Synthesis and late stage modifications of Cyl derivatives

• Phil Servatius and
• Uli Kazmaier

Beilstein J. Org. Chem. 2022, 18, 174–181, doi:10.3762/bjoc.18.19

• chirality transfer. With this positive results in hand, we incorporated 5 into the desired tetrapeptide 8. So far, we carried out peptide Claisen rearrangements only with small dipeptides, but never used longer peptide chains, such as tetrapeptides. We knew from previous work that the protecting groups on

Asymmetric organocatalytic Michael addition of cyclopentane-1,2-dione to alkylidene oxindole

• Estelle Silm,
• Ivar Järving and
• Tõnis Kanger

Beilstein J. Org. Chem. 2022, 18, 167–173, doi:10.3762/bjoc.18.18

• because of the longer time needed. Next, we screened different protecting groups for the oxindole. Previously, Boc-protected oxindole 2a gave us the product in 75% yield, in dr 2.6:1 and in ee 90%/94% (Scheme 1, 3a). With a Cbz-protecting group the enantioselectivity decreased to 82%/88% (Scheme 1, 3b

• -protecting groups. Reaction conditions: 0.2 M solution of 1 (1 equiv), 2 (1 equiv), of catalyst D (0.1 equiv), chloroform, at room temperature; isolated yields after column chromatography; ee determined by chiral HPLC. Scope of the reaction (the relative configuration of the major diastereoisomer is depicted

Peptide stapling by late-stage Suzuki–Miyaura cross-coupling

• Hendrik Gruß,
• Rebecca C. Feiner,
• Ridhiwan Mseya,
• David C. Schröder,
• Michał Jewgiński,
• Kristian M. Müller,
• Rafał Latajka,
• Antoine Marion and
• Norbert Sewald

Beilstein J. Org. Chem. 2022, 18, 1–12, doi:10.3762/bjoc.18.1

• , 1 h. In panel C), amino acids in R1 and R2 are with protecting groups and R2 is resin-bound (Rink amide resin); R3 = 4-phenylboronic acid or (4-ethylphenyl)boronic acid (P2–P5). Supporting Information Supporting Information File 6: Details on the amino acid and peptide synthesis, analytical data of

Stepwise PEG synthesis featuring deprotection and coupling in one pot

• Logan Mikesell,
• Dhananjani N. A. M. Eriyagama,
• Yipeng Yin,
• Bao-Yuan Lu and
• Shiyue Fang

Beilstein J. Org. Chem. 2021, 17, 2976–2982, doi:10.3762/bjoc.17.207

• under basic conditions. (2) The protecting group is stable under the basic Williamson ether formation conditions. For this reason, we screened several potentially useful protecting groups against these two criteria using compounds 3a–l (Scheme 2). For criterion (1), we subjected the compounds into basic

• protecting groups in compounds 3a–l meet the criterion (1). For criterion (2), we conducted the Williamson ether formation reaction between compounds 4 and 1 to form compound 5 using KHMDS as the base in the presence of compounds 3a–l. Compound 4 (1 equiv) in THF was deprotonated with KHMDS (1.2 equiv). The

• compounds 3a–l against criteria (1) and (2), we concluded that the protecting groups in compounds 3a–g and 3i–l can be used as the base-labile protection group for the new PEG synthesis method featuring PEG elongation in one-pot. Among the groups studied, the phenethyl group (i.e., -(CH2)2Ph) is one of the

DABCO-promoted photocatalytic C–H functionalization of aldehydes

• Bruno Maia da Silva Santos,
• Mariana dos Santos Dupim,
• Cauê Paula de Souza,
• Thiago Messias Cardozo and
• Fernanda Gadini Finelli

Beilstein J. Org. Chem. 2021, 17, 2959–2967, doi:10.3762/bjoc.17.205

• differences are discussed. Keywords: C–H functionalization; DABCO; HAT; photocatalysis; Introduction The functionalization of inert C–H bonds is a goal pursued by chemists from decades, due to its ubiquity in organic molecules. This strategy also dismisses tiresome protecting groups and functional group

A photochemical C=C cleavage process: toward access to backbone N-formyl peptides

• Haopei Wang and
• Zachary T. Ball

Beilstein J. Org. Chem. 2021, 17, 2932–2938, doi:10.3762/bjoc.17.202

• a rich history that dates back decades [1][2][3][4][5]. Photochemical pathways allow access to diverse and interesting target structures [6][7][8][9][10], though photocleavage of C–X bonds for use as photoremovable protecting groups [11][12] has been the major thrust of the development of 2

Total synthesis of the O-antigen repeating unit of Providencia stuartii O49 serotype through linear and one-pot assemblies

• Tanmoy Halder and
• Somnath Yadav

Beilstein J. Org. Chem. 2021, 17, 2915–2921, doi:10.3762/bjoc.17.199

• 73%. The structure of the trisaccharide was confirmed by comparison of its NMR and HRMS spectral data with that of the previously synthesized product by the linear strategy. With the protected trisaccharide 2 in hand, it remained to carry out the N-acetylation and the removal of the protecting groups

Synthetic strategies toward 1,3-oxathiolane nucleoside analogues

• Umesh P. Aher,
• Dhananjai Srivastava,
• Girij P. Singh and
• Jayashree B. S

Beilstein J. Org. Chem. 2021, 17, 2680–2715, doi:10.3762/bjoc.17.182

Synthesis of highly substituted fluorenones via metal-free TBHP-promoted oxidative cyclization of 2-(aminomethyl)biphenyls. Application to the total synthesis of nobilone

• Ilya A. P. Jourjine,
• Lukas Zeisel,
• Jürgen Krauß and
• Franz Bracher

Beilstein J. Org. Chem. 2021, 17, 2668–2679, doi:10.3762/bjoc.17.181

• reaction to give the hydroxyfluorenone 10t (Scheme 6) was unsuccessful, suggesting that here TBHP chemoselectively reacts with the phenolic group to generate non-identifiable products. In order to provide an access to phenolic fluorenones as well, some commonly used phenol protecting groups were tested

• . Both TBS and SEM protecting groups were tolerated, as demonstrated by the syntheses of the fluorenones 10u and 10v (52 and 46% yields). As expected, the O-benzyl group was not tolerated, giving only trace amounts of product 10w, as benzyl ethers are well known to undergo side reactions with free

• Suzuki cross-coupling reactions, followed by reduction or reductive amination. The oxidative cyclization conditions are compatible with many functional groups on the aromatic rings (methoxy, chloro, cyano, nitro, and phenol protecting groups like TBS and SEM – but not benzyl and methylenedioxy

α-Ketol and α-iminol rearrangements in synthetic organic and biosynthetic reactions

• Scott Benz and
• Andrew S. Murkin

Beilstein J. Org. Chem. 2021, 17, 2570–2584, doi:10.3762/bjoc.17.172

• silyl ethers. Ooi et al. utilized an axially chiral organoaluminum Lewis acid catalyst (18) to convert a series of α,α-dialkyl-α-siloxyaldehydes 16 to α-siloxyketones 17 in high yields and >74% ee (Figure 5) [7]. This reaction is noteworthy for its tolerance of silyl protecting groups, which are

A novel methodology for the efficient synthesis of 3-monohalooxindoles by acidolysis of 3-phosphate-substituted oxindoles with haloid acids

• Li Liu,
• Yue Li,
• Tiao Huang,
• Dulin Kong and
• Mingshu Wu

Beilstein J. Org. Chem. 2021, 17, 2321–2328, doi:10.3762/bjoc.17.150

• substrate with no residue R1 on the phenyl ring produced the corresponding product 4a in a higher yield than some the substituted substrates. In addition, N-protected (2-oxoindolin-3-yl) phosphate substrates could also deliver the products in good yield (see 4m–o), even though bulkier N-protecting groups

Progress and challenges in the synthesis of sequence controlled polysaccharides

• Giulio Fittolani,
• Theodore Tyrikos-Ergas,
• Denisa Vargová,
• Manishkumar A. Chaube and
• Martina Delbianco

Beilstein J. Org. Chem. 2021, 17, 1981–2025, doi:10.3762/bjoc.17.129

• for the introduction of unnatural modifications. However, the control over the length and substitution pattern remains poor. To ensure good regio- and stereoselectivity, the starting material, often a polycyclic compound, has to be designed with suitable protecting groups (PGs). These structures can

• importance of the deacetylated residues, with the free amino group able to stabilize new geometries. Many more N-protecting groups [217][261] are available and could generate COS with defined PA, however, to date most of them have shown significant drawbacks, decreasing the reactivity of the BB during

Chemical synthesis of C6-tetrazole ᴅ-mannose building blocks and access to a bioisostere of mannuronic acid 1-phosphate

• Eleni Dimitriou and
• Gavin J. Miller

Beilstein J. Org. Chem. 2021, 17, 1527–1532, doi:10.3762/bjoc.17.110

• appropriate chemoenzymatic syntheses [21][22][23]. Conclusion We have established synthetic access to a series of C6-tetrazole thioglycoside monosaccharide building blocks with capability for orthogonal C4- and tetrazole N-protecting groups. We demonstrate anomeric manipulation of these donors to new

Total synthesis of ent-pavettamine

• Memory Zimuwandeyi,
• Manuel A. Fernandes,
• Amanda L. Rousseau and
• Moira L. Bode

Beilstein J. Org. Chem. 2021, 17, 1440–1446, doi:10.3762/bjoc.17.99

• group did not yield the desired product [22][23][24][25][26]. Several selective trityl deprotection attempts gave different results: either the reaction did not proceed at all yielding starting material, or both the trityl and benzyl group were removed or all three protecting groups were removed. Based

• pavettamine, in order to obtain the enantiomer. The final deprotection step proved particularly efficient, with two protecting groups being removed simultaneously to unveil the desired target. Structure of pavettamine 1 and its enantiomer 2. Crystal structure of compound 9. Single crystal X-ray structure of