Mechanochemical bottom-up synthesis of phosphorus-linked, heptazine-based carbon nitrides using sodium phosphide

• Blaine G. Fiss,
• Georgia Douglas,
• Michael Ferguson,
• Jorge Becerra,
• Jesus Valdez,
• Trong-On Do,
• Tomislav Friščić and
• Audrey Moores

Beilstein J. Org. Chem. 2022, 18, 1203–1209, doi:10.3762/bjoc.18.125

• -based materials showed similar resonances to previous work by our group on phosphorus-linked triazine networks [38]. The 31P MAS NMR of g-h-PCN showed a broad resonance centered around −8.9 ppm, with a sharp residual phosphate resonance at 0.9 ppm (Figure 3a). NMR analysis of similar materials, by our

• group as well as others, suggest that the broad resonance corresponds to a largely amorphous phase with predominately phosphate and phosphite-like environments, with the broad resonance at −8.9 ppm possibly corresponding to hydrated sodium phosphate byproducts [43][44]. The NMR spectrum of the g-h

Lewis acid-catalyzed Pudovik reaction–phospha-Brook rearrangement sequence to access phosphoric esters

• Jin Yang,
• Dang-Wei Qian and
• Shang-Dong Yang

Beilstein J. Org. Chem. 2022, 18, 1188–1194, doi:10.3762/bjoc.18.123

• catalyst through a similar transformation under solvent-free conditions [44]. Recently, Zhang’s group disclosed a cesium carbonate-catalyzed Pudovik reaction–phospha-Brook rearrangement sequence and extended the phosphorus source from phosphate to phosphonate [45]. Despite of these important advancements

New azodyrecins identified by a genome mining-directed reactivity-based screening

• Atina Rizkiya Choirunnisa,
• Kuga Arima,
• Yo Abe,
• Noritaka Kagaya,
• Kei Kudo,
• Hikaru Suenaga,
• Junko Hashimoto,
• Manabu Fujie,
• Noriyuki Satoh,
• Kazuo Shin-ya,
• Kenichi Matsuda and
• Toshiyuki Wakimoto

Beilstein J. Org. Chem. 2022, 18, 1017–1025, doi:10.3762/bjoc.18.102

• azodyrecins (Scheme 2). The pathway is likely initiated by Ady2, a putative dehydrogenase that recruits fatty acids from primary metabolism to generate an aldehyde, which would be converted to an aliphatic amine by the pyridoxal phosphate (PLP)-dependent transaminase Ady4. The amine would be N-hydroxylated by

Efficient production of clerodane and ent-kaurane diterpenes through truncated artificial pathways in Escherichia coli

• Fang-Ru Li,
• Xiaoxu Lin,
• Qian Yang,
• Ning-Hua Tan and
• Liao-Bin Dong

Beilstein J. Org. Chem. 2022, 18, 881–888, doi:10.3762/bjoc.18.89

• minimum C5 isoprenoid building blocks isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), which are produced in the cell via one of two pathways: i) the mevalonate (MVA) pathway includes seven steps from acetyl-CoA (A-CoA); and ii) the 2-C-methyl-ᴅ-erythritol 4-phosphate (MEP) pathway

• includes eight steps starting from the condensation of pyruvate and ᴅ-glyceraldehyde 3-phosphate (G3P) [13][14] (Figure 1a). Due to these lengthy biosynthetic steps as well as complex metabolic regulations and extensive cofactor requirements, several groups have engineered elegant bypass pathways to

• (AACT); HMG-CoA synthase (HMGS); HMG-CoA reductase (HMGR); mevalonate kinase (MVK); phosphomevalonate kinase (PMK); diphosphomevalonate decarboxylase (PMD); 1-deoxy-ᴅ-xylulose 5-phosphate synthase (DXS); 1-deoxy-ᴅ-xylulose 5-phosphate reductoisomerase (DXR). Truncated artificial pathways (six steps) to

The stereochemical course of 2-methylisoborneol biosynthesis

• Binbin Gu,
• Anwei Hou and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2022, 18, 818–824, doi:10.3762/bjoc.18.82

• . Further conversion by treatment with PPh3, iodine, pyridine, and water [38] gave access to (R)- and (S)-2-methyllinalool (6a and 6b). The materials were subsequently converted into the diphosphates using triethylammonium phosphate and trichloroacetonitrile [39] (Scheme 2). Conversion of enantiomerically

Synthesis of odorants in flow and their applications in perfumery

• Merlin Kleoff,
• Paul Kiler and
• Philipp Heretsch

Beilstein J. Org. Chem. 2022, 18, 754–768, doi:10.3762/bjoc.18.76

• solution of (R)-carvone (25) in toluene is merged with a stream of hydrogen and the resulting segmented flow is passed through a column reactor containing a dimethylpolysilane-modified platinum catalyst (DMPS-Pt, 26), immobilized on carbon/calcium phosphate. At a temperature of 25 °C using 1.4 equivalents

• %. Thus, Brenna and co-workers developed a cis-selective synthesis of 54 via a biocatalytic process in flow (Scheme 12) [45]. In the first step, a mixture of cyclohexanone 51, NADH, and isopropanol in an aqueous phosphate buffer (pH ≈ 7) is pumped through a continuously stirred membrane reactor at 30 °C

Identification of the new prenyltransferase Ubi-297 from marine bacteria and elucidation of its substrate specificity

• Jamshid Amiri Moghaddam,
• Huijuan Guo,
• Karsten Willing,
• Thomas Wichard and
• Christine Beemelmanns

Beilstein J. Org. Chem. 2022, 18, 722–731, doi:10.3762/bjoc.18.72

• % pairwise identity) displayed similarities to geranylgeranylglyceryl phosphate synthases (EC 2.5.1.42), which are involved in the formation of polar membrane lipids of archaea and other bacteria [20], while group G4 contained close homologs of the protoheme IX farnesyltransferase (EC 2.5.1.141) (23–100

• % pairwise identity) responsible for heme O production in bacteria like E. coli [21][22]. However, no representatives of the remaining four Ptase groups G6–G8, which encode for ubiquinone biosynthesis (G5), decaprenyl-phosphate phosphoribosyltransferases (EC 2.4.2.45, G6) as reported in Mycobacteriaceae [23

• biochemically characterized Ptases; however, none of the members grouped with UbiA-297 the G2-Ptase group (Figure S1, Supporting Information File 1). The closest characterized relatives were identified as a putatively assigned digeranylgeranylglyceryl phosphate synthase encoded in Sulfurisphaera tokodaii str. 7

Heteroleptic metallosupramolecular aggregates/complexation for supramolecular catalysis

• Prodip Howlader and
• Michael Schmittel

Beilstein J. Org. Chem. 2022, 18, 597–630, doi:10.3762/bjoc.18.62

• catalysts that allow ON/OFF reaction control in photoredox catalysis [120], phosphate diester transesterification [121], Friedel–Crafts reaction, ring opening of epoxides, oligomerization [116], and acyl-transfer reactions [122][123]. While there are further examples by Mirkin [124][125][126], Schmittel

Shift of the reaction equilibrium at high pressure in the continuous synthesis of neuraminic acid

• Jannis A. Reich,
• Miriam Aßmann,
• Kristin Hölting,
• Paul Bubenheim,
• Jürgen Kuballa and
• Andreas Liese

Beilstein J. Org. Chem. 2022, 18, 567–579, doi:10.3762/bjoc.18.59

• (ECR8309F). For all immobilizations, a 20 mM sodium phosphate buffer with a pH of 7.4 was used as immobilization buffer. All filtration steps were executed using a membrane pump (Membrane pump ME 2C NT, Vacuubrandt GMBH & Co. KG, Wertheim, Germany) with bottle topper filter (Nalgene™, Thermo Fisher

• washed with immobilization buffer. For immobilization, the buffer of purified enzymes (150 mM imidazol, 300 mM NaCl, 50 mM sodium phosphate buffer pH 7.4) was exchanged to the immobilization buffer using ultracentrifuge units with 10 kDa Cut-off (Sartorius Vivaspin™, Göttingen, Germany). The unbuffered

• moisture (immobilized enzyme after filtration under vacuum) at 6 °C. Storage in 20 mM sodium phosphate buffer, pH 7.5 at 6 °C and 40 °C, respectively and storage at 40 °C while shaking at 1000 rpm. Enzyme activity was measured at regular intervals over the storage period. For each measuring point, the

BINOL as a chiral element in mechanically interlocked molecules

• Matthias Krajnc and
• Jochen Niemeyer

Beilstein J. Org. Chem. 2022, 18, 508–523, doi:10.3762/bjoc.18.53

• )-52/(S)-53 were mixed with the dialkynylated amine 54 to give the pseudorotaxanes based on ammonium–phosphate interactions. Subsequent stoppering with bulky azides 55a/b gave rotaxanes (S)-56a/b and (S)-57a/b in yields of 28–58%. These catalysts differ in the length of the axle (n = 0 or 1, for a or b

• zwitterionic ammonium phosphate rotaxanes were inactive, deprotonation with LiOH led to active catalysts for this reaction. In all cases, the interlocked catalysts showed faster conversion (87–92% conversion after 7 days) than the corresponding non-interlocked mixtures of macrocycle and thread (35–78

• for the non-interlocked mixture, see Figure 15). DFT calculations showed that the reaction takes place by cooperative action of the Li phosphate macrocycle and the amine thread, enabled by the mechanical bond. The Li phosphate acts as a Lewis acid to activate the malonic acid diethyl ester, which is

Synthesis of 3,4,5-trisubstituted isoxazoles in water via a [3 + 2]-cycloaddition of nitrile oxides and 1,3-diketones, β-ketoesters, or β-ketoamides

• Md Imran Hossain,
• Md Imdadul H. Khan,
• Seong Jong Kim and
• Hoang V. Le

Beilstein J. Org. Chem. 2022, 18, 446–458, doi:10.3762/bjoc.18.47

• phosphate buffer under weakly acidic conditions (pH 4.0) at room temperature for 15–24 h and generated 3,5-disubstituted isoxazolines and 3,4,5-trisubstituted isoxazoles in good yields (Figure 1) [28]. Notably, no metal catalysts were used in this method. The development of organic reactions in water not

• % methanol (Table 1, entry 15); in these cases, compound 4 was obtained in excellent yields (70% yield and 95% yield, respectively). Compound 4 was also formed almost exclusively in 76% yield when the reaction was run in phosphate buffer (pH 7.4) in the presence of 5% methanol with 10 mol % of DIPEA (Table 1

Menadione: a platform and a target to valuable compounds synthesis

• Acácio S. de Souza,
• Ruan Carlos B. Ribeiro,
• Dora C. S. Costa,
• Fernanda P. Pauli,
• David R. Pinho,
• Matheus G. de Moraes,
• Fernando de C. da Silva,
• Luana da S. M. Forezi and
• Vitor F. Ferreira

Beilstein J. Org. Chem. 2022, 18, 381–419, doi:10.3762/bjoc.18.43

• steps whose main difficulties are the separation of pyridine byproducts and inorganic phosphate (Scheme 20). Kulkarni and co-workers reported a method for menadione reduction mediated by 5,6-O-isopropylidene-ʟ-ascorbic acid (70, R = H) under UV light irradiation [120]. Initial studies were carried out

Regioselectivity of the S_EAr-based cyclizations and S_EAr-terminated annulations of 3,5-unsubstituted, 4-substituted indoles

• Jonali Das and
• Sajal Kumar Das

Beilstein J. Org. Chem. 2022, 18, 293–302, doi:10.3762/bjoc.18.33

• and co-workers reported that the ring closure of the Pictet−Spengler reaction between 2-(1H-indol-4-yl)ethanamine (10) and secologanin (11) in potassium phosphate buffer (KPi) at 70 °C regioselectively took place at the indole C3 position, resulting in unstable 4β-(R)-1H-azepino[3,4,5-cd

Anomeric 1,2,3-triazole-linked sialic acid derivatives show selective inhibition towards a bacterial neuraminidase over a trypanosome trans-sialidase

• Peterson de Andrade,
• Sanaz Ahmadipour and
• Robert A. Field

Beilstein J. Org. Chem. 2022, 18, 208–216, doi:10.3762/bjoc.18.24

• 3a–h were tested at 1.0 mM in the presence of the donor substrate MUNANA (0.1 mM) along with pyridoxal phosphate (PLP, Ki = 7.3 mM) [35] and 2,3-dehydro-2-deoxy-N-acetylneuraminic acid (DANA) [36] as positive controls for TcTS and neuraminidase, respectively. Surprisingly, the results showed

• further purification. N-Acetylneuraminic acid was purchased from Carbosynth (MA00746), terminal alkynes were purchased from Sigma-Aldrich, MUNANA [2'-(4-methylumbelliferyl)-α-ᴅ-N-acetylneuraminic acid sodium salt hydrate] (BIB6114) was purchased from Apollo Scientific Ltd, pyridoxal 5′-phosphate hydrate

• described by Neres and co-workers [34]. Briefly, TcTS assay was performed in duplicate in 96-well plates containing 200 mM phosphate buffer solution pH 7 (20 μL), 0.8 mg/mL recombinant enzyme (20 μL), 5 mM lactose (20 μL) and 5 mM inhibitor (20 μL) solutions. This mixture was kept for 10 min at 25 °C

1,2-Naphthoquinone-4-sulfonic acid salts in organic synthesis

• Ruan Carlos B. Ribeiro,
• Patricia G. Ferreira,
• Amanda de A. Borges,
• Luana da S. M. Forezi,
• Fernando de Carvalho da Silva and
• Vitor F. Ferreira

Beilstein J. Org. Chem. 2022, 18, 53–69, doi:10.3762/bjoc.18.5

• similar to lapachol, buparvaquone (13) and parvaquone (14), are used to treat animal diseases, such as bovine theileriosis (east coast fever, corridor disease, Zimbabwean theileriosis, and tropical theileriosis) [30][31][32][33]. Buparvaquone (13), phosphate prodrugs, and some formulations were evaluated

Recent advances in the asymmetric phosphoric acid-catalyzed synthesis of axially chiral compounds

• Alemayehu Gashaw Woldegiorgis and
• Xufeng Lin

Beilstein J. Org. Chem. 2021, 17, 2729–2764, doi:10.3762/bjoc.17.185

• functional calculations showed that the chiral phosphoric acid proton forms an H-bond with nitrogen atoms of 1 and the phosphate acts as a chiral counterion, resulting in a [3,3]-sigmatropic rearrangement with controlled stereoselectivity [14][41]. In 2017, Tan and co-workers developed an organocatalytic

Synthetic strategies toward 1,3-oxathiolane nucleoside analogues

• Umesh P. Aher,
• Dhananjai Srivastava,
• Girij P. Singh and
• Jayashree B. S

Beilstein J. Org. Chem. 2021, 17, 2680–2715, doi:10.3762/bjoc.17.182

• with natural nucleotides for incorporation into the growing HIV DNA chain. The result if the triphosphate is taken up is the termination of the chain elongation because the drug lacks the 3’-hydroxy group on the deoxyribose ring that is necessary for the sugar–phosphate linking as shown in Figure 2

• THF and phosphate-buffered saline (PBS). The reaction used 64 and 3q as starting materials and was stereocontrolled efficiently, providing an enantiomeric excess of about >99%. The subsequent N-glycosylation further provided enantiopure lamivudine (1). Hu et al. [60] explained that chiral HPLC and

α-Ketol and α-iminol rearrangements in synthetic organic and biosynthetic reactions

• Scott Benz and
• Andrew S. Murkin

Beilstein J. Org. Chem. 2021, 17, 2570–2584, doi:10.3762/bjoc.17.172

• -xylulose-5-phosphate reductoisomerase (DXR), uses a different mechanism to accomplish the carbon-skeleton rearrangement of its substrate 63 [19]; kinetic isotope effect experiments have excluded an α-ketol rearrangement and instead support a stepwise retro-aldol/aldol sequence for formation of intermediate

• similarity in reaction, 1-deoxy-ᴅ-xylulose-5-phosphate reductoisomerase (DXR) instead uses a retro-aldol/aldol sequence to accomplish its rearrangement of 68 to 69. c) The secondary metabolite aurachin C (71) is oxidized by the FAD-dependent monooxygenase AuaG to epoxide 72, which upon deprotonation by an

Cryogels: recent applications in 3D-bioprinting, injectable cryogels, drug delivery, and wound healing

• Luke O. Jones,
• Leah Williams,
• Tasmin Boam,
• Martin Kalmet,
• Chidubem Oguike and
• Fiona L. Hatton

Beilstein J. Org. Chem. 2021, 17, 2553–2569, doi:10.3762/bjoc.17.171

• polyamidoamine (PAMAM) dendrimers have been shown to be effective for minimally invasive drug delivery [83]. The reinforced cryogels main function was to provide scaffolding for cell growth and also incorporated the anti-inflammatory corticosteroid drug betamethasone sodium phosphate (BSP) for delivery when

• as a DDS using diclofenac sodium and indomethacin as the drugs. They reported the cumulative release of diclofenac sodium from the monoliths lower than 5% at pH 1.2 and higher than 70% at pH 7.4. In addition, they reported cumulative release 6% of indomethacin within the first hour in phosphate

A novel methodology for the efficient synthesis of 3-monohalooxindoles by acidolysis of 3-phosphate-substituted oxindoles with haloid acids

• Li Liu,
• Yue Li,
• Tiao Huang,
• Dulin Kong and
• Mingshu Wu

Beilstein J. Org. Chem. 2021, 17, 2321–2328, doi:10.3762/bjoc.17.150

• University, Haikou 571199, Hainan Province, P. R. China 10.3762/bjoc.17.150 Abstract A novel method for the synthesis of 3-monohalooxindoles by acidolysis of isatin-derived 3-phosphate-substituted oxindoles with haloid acids was developed. This synthetic strategy involved the preparation of 3-phosphate

• -substituted oxindole intermediates and SN1 reactions with haloid acids. This new procedure features mild reaction conditions, simple operation, good yield, readily available and inexpensive starting materials, and gram-scalability. Keywords: acidolysis; haloid acids; isatin; 3-monohalooxindole; 3-phosphate

• has a remarkable structural feature: the phosphate moiety is located at the benzylic position as well as at the position α to an amide group, which makes it a good leaving group for the design and development of new reactions. Accordingly, diethyl (2-oxoindolin-3-yl) phosphates 2 have been used

Halides as versatile anions in asymmetric anion-binding organocatalysis

• Lukas Schifferer,
• Martin Stinglhamer,
• Kirandeep Kaur and
• Olga García Macheño

Beilstein J. Org. Chem. 2021, 17, 2270–2286, doi:10.3762/bjoc.17.145

• interactions in the chloride channel of E. coli. and b) examples of chloride, cyanide, nitrate and phosphate anions with their respective topology. a) H-bond vs anion-binding catalysis and b) activation modes in anion-binding catalysis. Role of the counter-anion: a) Anion acting as a spectator and b) anion

Transition-metal-free intramolecular Friedel–Crafts reaction by alkene activation: A method for the synthesis of some novel xanthene derivatives

• Tülay Yıldız,
• İrem Baştaş and
• Hatice Başpınar Küçük

Beilstein J. Org. Chem. 2021, 17, 2203–2208, doi:10.3762/bjoc.17.142

• , iron(III) chloride hexahydrate, trifluoroacetic acid (TFA), N-trifylphosphoramide (NTPA), benzoic acid, diphenyl phosphate (DPP), malonic acid, chloroacetic acid, copper(II) triflate, acetic acid, and p-toluenesulfonic acid (p-TSA) were used as catalysts. TFA gave the best yield of these catalysts with

Progress and challenges in the synthesis of sequence controlled polysaccharides

• Giulio Fittolani,
• Theodore Tyrikos-Ergas,
• Denisa Vargová,
• Manishkumar A. Chaube and
• Martina Delbianco

Beilstein J. Org. Chem. 2021, 17, 1981–2025, doi:10.3762/bjoc.17.129

• (LG, e.g., phosphate, fluoride, nucleotide) are polymerized by the enzyme to form the desired polysaccharide (Figure 1A). Several classes of enzymes are available, including hydrolases, phosphorylases, sucrases, glycosyltransferases, and glycosynthases [19][20][21][22]. An excellent overview of the

• well as branched β(1–3)-glucans with defined lengths could be prepared by AGA [140][141][142]. The poor nucleophilicity of the C-3 hydroxy group on the glycosyl acceptor required the use of more reactive glycosyl phosphate donors and, in some cases, a double glycosylation cycle [118][143]. Longer

• , enabling the synthesis of a 32mer [272]. The construction of α(1–6)-mannans (up to 10mer) bearing α(1–2)-Man branches was also accomplished using phosphate, N-phenyltrifluoroacetimidate or n-pentenylorthoester donors [273][274]. An approach using a (cationic) ROP method using tricyclic orthoester Man BBs

Chemical approaches to discover the full potential of peptide nucleic acids in biomedical applications

• Nikita Brodyagin,
• Martins Katkevics,
• Venubabu Kotikam,
• Christopher A. Ryan and
• Eriks Rozners

Beilstein J. Org. Chem. 2021, 17, 1641–1688, doi:10.3762/bjoc.17.116

• for innovative chemistry and biology to unlock the full potential of PNA in biomedical applications. Keywords: antisense; chemical modifications; diagnostics; peptide nucleic acid; PNA; Introduction Peptide nucleic acid (PNA) is a DNA mimic where the sugar–phosphate backbone of DNA is replaced with

• similar to A-type DNA and RNA, and allows the O1P oxygen from each DNA phosphate to form a hydrogen bond to the amide proton of each residue of the PNA backbone of the Hoogsteen strand [41]. More recent structural work by Rozners and co-workers confirmed that the PNA–dsRNA triplex had similar structural

Chemical synthesis of C6-tetrazole ᴅ-mannose building blocks and access to a bioisostere of mannuronic acid 1-phosphate

• Eleni Dimitriou and
• Gavin J. Miller

Beilstein J. Org. Chem. 2021, 17, 1527–1532, doi:10.3762/bjoc.17.110

• -protected donors, suitable for iterative oligosaccharide synthesis. The development of these building blocks is showcased to access anomeric 3-aminopropyl- and 1-phosphate free sugars containing this non-native motif. Keywords: alginate; glycosyl 1-phosphate; non-native monosaccharide; tetrazole; uronate

• to explore the synthesis of a ᴅ-manno C6-tetrazole thioglycoside donor and examine subsequent installation of C1 phosphate and anomeric linker groups. Results and Discussion An initial route towards a protected C6-tetrazole building block started from known mannuronic acid thioglycoside 1 (Scheme 1

• overall yield for the route increased from 9 to 21%. To demonstrate capability for anomeric linker attachment and conversion to a biologically relevant analogue of mannuronic acid 1-phosphate, 3-aminopropyl glycoside 20 and glycosyl 1-phosphate 21 were synthesised (Scheme 4). The mixture 18/19 was used