Substituted nitrogen-bridged diazocines

• Pascal Lentes,
• Jeremy Rudtke,
• Thomas Griebenow and
• Rainer Herges

Beilstein J. Org. Chem. 2021, 17, 1503–1508, doi:10.3762/bjoc.17.107

• . Moreover, the photoconversion yield for the E→Z isomerization is quantitative (within the detection limit of UV and NMR spectroscopy). A high efficiency in switching the biological activity off is important to avoid side effects of residual concentrations of the active form [13]. Water solubility and high

Double-headed nucleosides: Synthesis and applications

• Vineet Verma,
• Jyotirmoy Maity,
• Vipin K. Maikhuri,
• Ritika Sharma,
• Himal K. Ganguly and
• Ashok K. Prasad

Beilstein J. Org. Chem. 2021, 17, 1392–1439, doi:10.3762/bjoc.17.98

• was hybridized with a DNA target. The double-headed nucleoside 41 has potential in DNA invader probes as well as in RNA targeting and detection [23]. 1,3-Furanosyl double-headed nucleosides In this section, all double-headed nucleosides with furanosyl ring structures are collected. The first

Analogs of the carotane antibiotic fulvoferruginin from submerged cultures of a Thai Marasmius sp.

• Birthe Sandargo,
• Leon Kaysan,
• Rémy B. Teponno,
• Christian Richter,
• Benjarong Thongbai,
• Frank Surup and
• Marc Stadler

Beilstein J. Org. Chem. 2021, 17, 1385–1391, doi:10.3762/bjoc.17.97

• min, flow rate: 0.6 mL/min, UV detection 200–600 nm, was used to obtain the HRESIMS data. NMR spectra were acquired on a Bruker Avance III 700 MHz spectrometer (Bremen, Germany) equipped with a 5 mm TCI cryoprobe (1H NMR (700 MHz), 13C NMR (175 MHz)). Optical rotations of the metabolites were measured

• % FA served as mobile phase, running a gradient of 10 min at 5% acetonitrile + 0.1% FA, then increasing to 100% within 70 min, flow rate: 40 mL/min, UV detection at 200–600 nm. Pre-fractions were further separated using a Luna C18(2) 250 × 21 mm, 7 μm column (Phenomenex, Aschaffenburg, Germany) and

Antiviral therapy in shrimp through plant virus VLP containing VP28 dsRNA against WSSV

• Santiago Ramos-Carreño,
• Ivone Giffard-Mena,
• Jose N. Zamudio-Ocadiz,
• Alfredo Nuñez-Rivera,
• Ricardo Valencia-Yañez,
• Jaime Ruiz-Garcia,
• Maria Teresa Viana and
• Ruben D. Cadena-Nava

Beilstein J. Org. Chem. 2021, 17, 1360–1373, doi:10.3762/bjoc.17.95

• ). Pellets with VLP-dsRNAvp28 prepared with commercial binders (Dry Oil® and NutriKelp®) are described in Supporting Information File 1. Detection of WSSV by real-time quantitative PCR. The real-time PCR (qPCR) for quantitation of WSSV was performed using DNA isolated from shrimp muscle tissue and TaqMan

• concentration range of the standard curve was 3.9 × 109 to 3.9 × 104 copies/ng. The ABI StepOnePlus v2.0 sequence detection system software (Applied Biosystems, USA) was used. Amplification reactions included all shrimp were analyzed (alive, dying and dead) from each experimental group. The viral load of WSSV

• considered significant. For the WSSV detection, an analysis of variance (ANOVA) was used to compare the average number of copies of WSSV and the average number of copies between treatments was analyzed with the Tukey’s test (a = 0.05). The Student's t-test was used to obtain significant differences (t – 95

Icilio Guareschi and his amazing “1897 reaction”

• Gian Cesare Tron,
• Alberto Minassi,
• Giovanni Sorba,
• Mara Fausone and
• Giovanni Appendino

Beilstein J. Org. Chem. 2021, 17, 1335–1351, doi:10.3762/bjoc.17.93

• involvement of Guareschi in the first edition of the Italian Pharmacopoeia was accompanied by the production of an extensive commentary to be used by both pharmacists and industrialists. In connection with his interest in chemistry and art, Guareschi described a color reaction for the selective detection of

A new glance at the chemosphere of macroalgal–bacterial interactions: In situ profiling of metabolites in symbiosis by mass spectrometry

• Marine Vallet,
• Filip Kaftan,
• Veit Grabe,
• Fatemeh Ghaderiardakani,
• Simona Fenizia,
• Aleš Svatoš,
• Georg Pohnert and
• Thomas Wichard

Beilstein J. Org. Chem. 2021, 17, 1313–1322, doi:10.3762/bjoc.17.91

• (1024 × 1024) were acquired using a Zeiss cLSM 880 (Carl Zeiss AG, Oberkochen, Germany) with a Plan-Apochromat 20 × 0.8 and 488 nm Argon-laser excitation (5% transmission). Emission wavelengths for SYBR Gold (490–650 nm) and chlorophyll A (653–735 nm) were separated via the spectral detection unit

Structural effects of meso-halogenation on porphyrins

• Keith J. Flanagan,
• Maximilian Paradiz Dominguez,
• Zoi Melissari,
• Hans-Georg Eckhardt,
• René M. Williams,
• Dáire Gibbons,
• Caroline Prior,
• Gemma M. Locke,
• Alina Meindl,
• Aoife A. Ryan and
• Mathias O. Senge

Beilstein J. Org. Chem. 2021, 17, 1149–1170, doi:10.3762/bjoc.17.88

• bisporophyrin via reaction of the starting material with PhLi followed by in situ oxidation to a radical anion and dimerization [55]. While formation of 5,10,15-trisubstituted porphyrins and 5,10,15,20-tetrasubstituted porphyrins was anticipated as side products, the detection of the title compound 4 was

Metal-free glycosylation with glycosyl fluorides in liquid SO₂

• Krista Gulbe,
• Jevgeņija Lugiņina,
• Edijs Jansons,
• Artis Kinens and
• Māris Turks

Beilstein J. Org. Chem. 2021, 17, 964–976, doi:10.3762/bjoc.17.78

• can be performed in widely available glass pressure tubes. Detection of the FSO2− species by 19F NMR (471 MHz, D2O). Computational study of reaction mechanism α-11 + MeOH → α-13c in the presence of and in absence of SO2 (Gaussian 09, Revision D.01; Gaussian, Inc.; m052x method and the 6-31+g(d) basis

Enhanced target cell specificity and uptake of lipid nanoparticles using RNA aptamers and peptides

• Roslyn M. Ray,
• Anders Højgaard Hansen,
• Maria Taskova,
• Bernhard Jandl,
• Jonas Hansen,
• Citra Soemardy,
• Kevin V. Morris and
• Kira Astakhova

Beilstein J. Org. Chem. 2021, 17, 891–907, doi:10.3762/bjoc.17.75

• percentage of Cy5-positive cell detection and a higher MFI compared to the hCMEC/D3 barrier (Figure 2D and Supporting Information File 1, Figure S4). Collectively, these data suggest that the candidate LNPs, particularly LNP B9 G-3 T7, may increase uptake through tight junctions and prove useful in

• Nano ZS (Malvern Instruments, UK), having He–Ne 633 nm laser at an angle of detection of 90°, with an incubation time of 60 s. Samples were diluted 50-fold in Milli-Q water and placed into the disposable plastic cuvettes for measurement performed in triplicates (n ≥ 3) to obtain a mean value. NTA

• h later, the apical layer was removed, and the basolateral cells were washed, trypsinized, and resuspended in 1× PBS. Detection of Cy5 was measured by flow cytometry on a BD Accuri™ C6 device (Becton, Dickinson and Company, NJ), and the data was analyzed using FlowJo™ Version 10.7.1 (Becton

Microwave-assisted multicomponent reactions in heterocyclic chemistry and mechanistic aspects

• Shivani Gulati,
• Stephy Elza John and
• Nagula Shankaraiah

Beilstein J. Org. Chem. 2021, 17, 819–865, doi:10.3762/bjoc.17.71

• organic synthesis (2000–10), witnessed microwaves with optic fibre or IR pyrometers for temperature detection along with specific glass reaction vessels that can withstand pressure and temperature in the reaction generated especially by low boiling solvents. Microwave-assisted heating reduces reaction

Synthesis and physicochemical evaluation of fluorinated lipopeptide precursors of ligands for microbubble targeting

• Masayori Hagimori,
• Estefanía E. Mendoza-Ortega and
• Marie Pierre Krafft

Beilstein J. Org. Chem. 2021, 17, 511–518, doi:10.3762/bjoc.17.45

• blood circulation times by allowing them to evade immune detection. PEGs often play a key role in the design of the ligands as a spacer between the nanocarrier surface and the lipid. PEGs have, however, some shortcomings, such as a broad molecular weight distribution, large steric hindrance, and the

Identification of volatiles from six marine Celeribacter strains

• Anuj Kumar Chhalodia,
• Jan Rinkel,
• Dorota Konvalinkova,
• Jörn Petersen and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2021, 17, 420–430, doi:10.3762/bjoc.17.38

• (indole-2H5)tryptophan were performed, but none of these experiments resulted in a detectable incorporation of labeling. Conclusively, a non-biological origin of this part of the molecule seems likely, which may also explain why the detection of 41 in Celeribacter was not always reproducible. Notably, 2

1,2,3-Triazoles as leaving groups: S_NAr reactions of 2,6-bistriazolylpurines with O- and C-nucleophiles

• Dace Cīrule,
• Irina Novosjolova,
• Ērika Bizdēna and
• Māris Turks

Beilstein J. Org. Chem. 2021, 17, 410–419, doi:10.3762/bjoc.17.37

• Agilent Technologies 1200 Series chromatograph equipped with an Agilent XDB-C18 (4.6 × 50 mm, 1.8 µm) column was used. Eluent A: 0.1% TFA solution with 5% v/v MeCN added; eluent B – MeCN. Gradient: 10–95% B 5 min, 95% B 5 min, 95–10% B 2 min. Flow: 1 mL/min. Wavelength of detection was 260 nm. LC–MS was

Regioselective chemoenzymatic syntheses of ferulate conjugates as chromogenic substrates for feruloyl esterases

• Olga Gherbovet,
• Fernando Ferreira,
• Apolline Clément,
• Mélanie Ragon,
• Julien Durand,
• Sophie Bozonnet,
• Michael J. O'Donohue and
• Régis Fauré

Beilstein J. Org. Chem. 2021, 17, 325–333, doi:10.3762/bjoc.17.30

• , France 10.3762/bjoc.17.30 Abstract Generally, carbohydrate-active enzymes are studied using chromogenic substrates that provide quick and easy color-based detection of enzyme-mediated hydrolysis. For feruloyl esterases, commercially available chromogenic ferulate derivatives are both costly and limited

• lignocellulosic matrix. Moreover, Faes are useful tools to obtain commercially relevant ferulic acid, which represents up to 3 wt % of plant the cell wall dry weight [8]. So far, the detection and characterization of Faes has mainly relied on either the use of HPLC or on UV–visible spectrophotometry, using

• ] and (ii) spontaneous oxidation and subsequent dimerization forming the insoluble blue 5-bromo-4-chloro-substituted indigo dye [15]. In an alternative demonstration, 1a was also used for colony level detection of FAE using yeast cells (Yarrowia lipolytica [30]) that actually coexpressed AnFaeA and

¹⁹F NMR as a tool in chemical biology

• Diana Gimenez,
• Aoife Phelan,
• Cormac D. Murphy and
• Steven L. Cobb

Beilstein J. Org. Chem. 2021, 17, 293–318, doi:10.3762/bjoc.17.28

• estrogen receptor (ER) co-activator peptides and enabled the sensitive detection of their protein–peptide interaction inhibition by the ER antagonist tamoxifen [20]. Significantly, different secondary structure conformational preferences were also found among the diastereomers of perfluoro-tert

• the aforementioned issues, Virta and co-workers have explored the application of trifluoromethyl analogues of guanosine, cytidine and uridine based in 2’-O-[(4-trifluoromethyltriazol-1-yl)methyl] reporter groups as 19F NMR probes for the detection of RNA secondary structures (Figure 14). As shown by

• , but only one could be detected (SF5-catechol) despite the 19F NMR analysis showing the presence of multiple fluorometabolites. Detection and biosynthesis of natural organofluorine compounds As naturally-occurring organofluorine compounds are so rare, it is possible to easily detect them in a crude

1,2,3-Triazoles as leaving groups in S_NAr–Arbuzov reactions: synthesis of C6-phosphonated purine derivatives

• Kārlis-Ēriks Kriķis,
• Irina Novosjolova,
• Anatoly Mishnev and
• Māris Turks

Beilstein J. Org. Chem. 2021, 17, 193–202, doi:10.3762/bjoc.17.19

• an Agilent Technologies 1200 Series system equipped with an XBridge C18 column, 4.6 × 150 mm, particle size 3.5 μm, with a flow rate of 1 mL/min, using eluent A–0.1% TFA/H2O with 5 vol % MeCN and eluent B–MeCN as the mobile phase. The wavelength of detection was 260 nm. Gradient: 30–95% B 5 min, 95

The fluorescence of a mercury probe based on osthol

• Guangyan Luo,
• Zhishu Zeng,
• Lin Zhang,
• Zhu Tao and
• Qianjun Zhang

Beilstein J. Org. Chem. 2021, 17, 22–27, doi:10.3762/bjoc.17.3

• selectivity for Hg2+. The fluorescence intensity of OST showed a good linear correlation with the Hg2+ concentration (6.0 × 10−5 to 24.0 × 10−5 mol∙L−1, R2 = 0.9954), and the detection limit of the probe was 5.04 × 10−8 mol∙L−1, which can be used for the determination of Hg2+ traces. Keywords: fluorescence

• irreversible nerve damage. Therefore, it is very important to develop a highly sensitive and selective method for mercury detection. At present, the detection of mercury mainly includes atomic absorption and atomic emission spectrometry [4], inductively coupled plasma mass spectrometry [5][6], and capillary

• electrophoresis [7]. However, the application of these analytical methods in mercury detection is limited due to the complex sample pretreatment procedures, expensive instruments, and other factors [8][9]. Fluorescent-probe instruments have been widely used due to the advantages of the simple operation, low cost

Synthesis, crystal structures and properties of carbazole-based [6]helicenes fused with an azine ring

• Daria I. Tonkoglazova,
• Anna V. Gulevskaya,
• Konstantin A. Chistyakov and
• Olga I. Askalepova

Beilstein J. Org. Chem. 2021, 17, 11–21, doi:10.3762/bjoc.17.2

• -detection (see Supporting Information File 1, Figures S38–S40). X-ray molecular structures The structures of the title compounds 10a–c were further explored by a single-crystal X-ray diffraction analysis (Figure 1, see also Supporting Information File 1, Figures S35–S37 and Table S1) and compared with that

Semiautomated glycoproteomics data analysis workflow for maximized glycopeptide identification and reliable quantification

• Steffen Lippold,
• Arnoud H. de Ru,
• Jan Nouta,
• Peter A. van Veelen,
• Magnus Palmblad,
• Manfred Wuhrer and
• Noortje de Haan

Beilstein J. Org. Chem. 2020, 16, 3038–3051, doi:10.3762/bjoc.16.253

• developed to facilitate and improve both the identification and quantification of glycopeptides. Here, a selection of these tools was combined and evaluated with the aim of establishing a robust glycopeptide detection and quantification workflow targeting enriched glycoproteins. For this purpose, a tryptic

• ]. Advances in MS technologies tremendously enhanced the detection and informative fragmentation of glycopeptides in the past years [9]. The large amount of highly complex data acquired using these technologies shifted the major bottleneck in glycopeptide analysis to the data processing steps. Next to the

• coverage was maximized by combining all measurements. For the MS1-based assignment, the variation between replicates was found in the minor glycan species, which were on the borderline of the limit of detection. Further, the stochastic nature of MS/MS selection is a known factor, which may cause

Secondary metabolites of Bacillus subtilis impact the assembly of soil-derived semisynthetic bacterial communities

• Heiko T. Kiesewalter,
• Carlos N. Lozano-Andrade,
• Mikael L. Strube and
• Ákos T. Kovács

Beilstein J. Org. Chem. 2020, 16, 2983–2998, doi:10.3762/bjoc.16.248

• , and Paenibacillus. The remaining most abundant genera in the mock communities were below the detection limit. The comparison of the abundance ratios between the control communities and B. subtilis WT-treated communities revealed that Lysinibacillus and Viridibacillus were significantly decreased 9.4

• indicated a significantly lower (P ≤ 0.01) abundance (0.03%) compared to the control communities. Notably, in two of the WT-treated community replicates, Viridibacillus was below the detection level. Nevertheless, the abundance of this genus in the sfp-treated communities (0.26%) was statistically not

• back to different growth rates among the present species. A substantial shift in the community compositions was observed between in vivo and in vitro communities since the majority of the genera present in the in vitro communities was below the detection limit in the soil sample. However, during the 12

Selected peptide-based fluorescent probes for biological applications

• Debabrata Maity

Beilstein J. Org. Chem. 2020, 16, 2971–2982, doi:10.3762/bjoc.16.247

• labeled with environmentally sensitive/FRET fluorophores have allowed direct detection/monitoring of biomolecules in aqueous media and in live cells. In this review, key peptide-based approaches for different biological applications are presented. Keywords: fluorescent probe; fluorophores; molecular

• for biomolecule detection [27][28]. Being intrinsically modular, peptide scaffolds also allow the attachment of multiple fluorophores simultaneously [29]. It provides the opportunity of developing ratiometric fluorescent sensors from the interaction between multiple fluorophores (Figure 1B

• to perform FRET in vitro and in vivo, particularly in living cells [30]. FRET-based peptide probes are heavily used for ratiometric fluorescence detection of biomolecules. Pyrene-functionalized oligonucleotides and locked nucleic acids (LNAs) are considerably used for targeting nucleic acids [31

Controlled decomposition of SF₆ by electrochemical reduction

• Sébastien Bouvet,
• Bruce Pégot,
• Stéphane Sengmany,
• Erwan Le Gall,
• Eric Léonel,
• Anne-Marie Goncalves and
• Emmanuel Magnier

Beilstein J. Org. Chem. 2020, 16, 2948–2953, doi:10.3762/bjoc.16.244

• , CNRS, ICMPE, UMR 7182, 2 rue Henri Dunant, 94320 Thiais, France 10.3762/bjoc.16.244 Abstract The electroreduction of SF6 is shown at ambient temperature in acetonitrile using an array of platinum microelectrodes to improve the electrical detection. Its half reduction potential occurs at −2.17 V vs Fc

• . All potentials were measured against a pseudo silver reference electrode (SRE). The addition of ferrocene in the electrolyte gives access to an internal reference [33]. In order to improve the current detection level of SF6, platinum disk electrodes were used as working electrode (Pt

• counter electrode. Electrochemical measurements were covered by a wide range of a potentiostat for more effective current detection. A potentiostat–galvanostat such as Princeton Applied Research Model 263 was monitored by its front panel and analogue-to-digital conversion was provided by «Powerlab». A

Using multiple self-sorting for switching functions in discrete multicomponent systems

• Amit Ghosh and
• Michael Schmittel

Beilstein J. Org. Chem. 2020, 16, 2831–2853, doi:10.3762/bjoc.16.233

• reversibility was achieved by the addition of the rhodium porphyrin 19 that reversed the system reviving the state SelfSORT-I. Since both self-sorted states exhibited a distinct fluorescence due to the changes at the zinc porphyrin sites, luminescence was used for the selective detection of DABCO in a mixture

3-Acetoxy-fatty acid isoprenyl esters from androconia of the ithomiine butterfly Ithomia salapia

• Florian Mann,
• Daiane Szczerbowski,
• Lisa de Silva,
• Melanie McClure,
• Marianne Elias and
• Stefan Schulz

Beilstein J. Org. Chem. 2020, 16, 2776–2787, doi:10.3762/bjoc.16.228

• vicinity of the male wings, although the evaporation rate might be increased by erection of the androconia hairpencils (Figure 1). Alternatively, direct or close contact might be needed for detection, probably taking place during contact of the female antennae with the male wings. What this potential

Selective recognition of ATP by multivalent nano-assemblies of bisimidazolium amphiphiles through “turn-on” fluorescence response

• Rakesh Biswas,
• Surya Ghosh,
• Shubhra Kanti Bhaumik and
• Supratim Banerjee

Beilstein J. Org. Chem. 2020, 16, 2728–2738, doi:10.3762/bjoc.16.223

• presence of positive surface charges on the multivalent aggregates led to ATP binding which was accompanied by a significant increase in the excimeric emission intensity. This provided a convenient way of monitoring ATP binding in a “turn-on” mode and an efficient detection of ATP was achieved in aqueous

• buffer and also in buffer containing 150 mM NaCl at physiological pH value. Furthermore, the multivalent aggregates demonstrated a significant selectivity in ATP detection over ADP, AMP and pyrophosphate. Keywords: amphiphile; ATP; excimer; multivalency; self-assembly; Introduction Supramolecular anion

• years, anion responsive materials [5][6] have also emerged as an interesting class of stimuli-responsive materials. Among the different varieties of anionic species, the selective and sensitive detection of bio-anions is particularly important due to their involvement in various biological functions