Tetrathiafulvalene – a redox-switchable building block to control motion in mechanically interlocked molecules

• Hendrik V. Schröder and
• Christoph A. Schalley

Beilstein J. Org. Chem. 2018, 14, 2163–2185, doi:10.3762/bjoc.14.190

• electrochemical operation of MIMs. Several excellent reviews on the use of TTF in other supramolecular systems such as macrocycles, cages, and receptor molecules are already available [15][16][17][18][19][20][21]. In this review, motifs of construction and working principles of TTF-based MIMs in the past and

• supramolecular chemistry [28] and for the construction of MIMs [29], the good π-donor properties of TTF are frequently used to template donor–acceptor complexes with π-electron deficient macrocycles. If TTF undergoes oxidation, the π-donating effect decreases, whereas the TTF2+ dication can be considered as a π

• hydrophobic TTF (1) in aqueous media [65]. Another water-soluble host which can complex TTFs is cucurbit[7]uril (7) [66]. However, it is not the neutral form, but the TTF radical cation 1●+ which is preferably bound in the cavity of this host. Even the dication 12+ can be hosted by suitable macrocycles. For

Calix[6]arene-based atropoisomeric pseudo[2]rotaxanes

• Carmine Gaeta,
• Carmen Talotta and
• Placido Neri

Beilstein J. Org. Chem. 2018, 14, 2112–2124, doi:10.3762/bjoc.14.186

• bis(benzylalkylammonium) axle [19], where the stereoselective formation of the pseudo[3]rotaxane with endo-alkyl orientation VIII was observed [19]. Calixarene macrocycles [22] have found numerous applications in several areas of supramolecular chemistry, such as (bio)molecular recognition [23] and

• catalysis [24]. The widespread use of the calixarene derivatives is due to their convenient synthesis and to their chemical and conformational versatility [25]. In fact, calixarene macrocycles present a conformational isomerism that in the case of calix[6]arenes gives rise to eight discrete conformations

• threading of calix[6]arene macrocycles in conformations different than the cone one has been rarely observed [17]. Interestingly, the assembling of interpenetrated structures in which the wheel adopts different conformational isomers, could pave the way to mechanomolecules which exhibit novel isomeric forms

Synthesis of new p-tert-butylcalix[4]arene-based polyammonium triazolyl amphiphiles and their binding with nucleoside phosphates

• Vladimir A. Burilov,
• Guzaliya A. Fatikhova,
• Mariya N. Dokuchaeva,
• Ramil I. Nugmanov,
• Diana A. Mironova,
• Pavel V. Dorovatovskii,
• Victor N. Khrustalev,
• Svetlana E. Solovieva and
• Igor S. Antipin

Beilstein J. Org. Chem. 2018, 14, 1980–1993, doi:10.3762/bjoc.14.173

• performed for the first time. It was found that the synthesized macrocycles form stable aggregates with hydrodynamic diameters between 150–200 nm and electrokinetic potentials about +40 to +60 mV in water solutions. Critical aggregation concentration (CAC) values were measured using a micelle method with

• pyrene and eosin Y as dye probes. The CAC values of tetraalkyl-substituted macrocycles 12a,b (5 µM for both) are significantly lower than those for dialkyl-substituted macrocycles 10a,b (790 and 160 µM, respectively). Premicellar aggregates of macrocycles 10a,b and 12a,b with the dye eosin Y were used

• for nucleotides sensing through a dye replacement procedure. It is unusual that disubstituted macrocycles 10a,b bind more effectively a less charged adenosine 5'-diphosphate (ADP) than adenosine 5'-triphosphate (ATP). A simple colorimetric method based on polydiacetylene vesicles decorated with 10b

Efficient catenane synthesis by cucurbit[6]uril-mediated azide–alkyne cycloaddition

• Antony Wing Hung Ng,
• Chi-Chung Yee,
• Kai Wang and
• Ho Yu Au-Yeung

Beilstein J. Org. Chem. 2018, 14, 1846–1853, doi:10.3762/bjoc.14.158

• mechanically interlocked macrocycles. The flexible but strong mechanical bond between the interlocked macrocycles offers a unique opportunity for exploiting catenanes as molecular machines or new materials with unusual mechanical properties [1][2][3][4][5][6][7][8][9]. Over the years, different templates and

• ring-closing reactions to form the interlocked macrocycles have been developed, but the majority of the reported catenanes is limited to the Hopf link (i.e., the simplest [2]catenane with two crossings) [9]. Synthesis of other high-order catenanes with more interlocked macrocycles and/or more crossing

• points remain challenging and more general synthetic strategies to catenanes are yet to be realized [10][11][12]. A major challenge in [n]catenane synthesis is the precise spatiotemporal control of the covalent formation of the macrocycles and their mechanical interlocking. Otherwise, various topological

Synthesis of diamido-bridged bis-pillar[5]arenes and tris-pillar[5]arenes for construction of unique [1]rotaxanes and bis-[1]rotaxanes

• Ying Han,
• Li-Ming Xu,
• Cui-Yun Nie,
• Shuo Jiang,
• Jing Sun and
• Chao-Guo Yan

Beilstein J. Org. Chem. 2018, 14, 1660–1667, doi:10.3762/bjoc.14.142

• axle to prevent dissociation of the subcomponents. In recent years, many effects have been devoted to the construction and functionalization of pseudo[1]rotaxanes and [1]rotaxanes [11][12][13][14][15][16][17][18][19][20]. For this purpose, the well-known macrocycles such as crown ether [21][22][23

A conformationally adaptive macrocycle: conformational complexity and host–guest chemistry of zorb[4]arene

• Liu-Pan Yang,
• Song-Bo Lu,
• Arto Valkonen,
• Fangfang Pan,
• Kari Rissanen and
• Wei Jiang

Beilstein J. Org. Chem. 2018, 14, 1570–1577, doi:10.3762/bjoc.14.134

• binding behavior of ZB4 and lays the basis for the construction of stimuli-responsive materials with ZB4 as a major component. Keywords: conformations; host–guest chemistry; macrocycles; supramolecular chemistry; zorb[4]arene; Introduction Macrocyclic receptors are the principal workhorses used in

• supramolecular chemistry [1]. A myriad of synthetic macrocycles have sprouted during the past decade, greatly enriching the arsenal of supramolecular chemists [2][3][4][5][6][7][8][9][10][11]. The majority of artificial macrocycles are featured with rigid backbones as it is widely accepted that preorganization

• biomimetic structures [24]: endo-functionalized molecular tubes [25][26][27][28][29][30] and conformationally adaptive macrocycles [31][32][33][34][35][36][37]. Among the conformationally adaptive macrocycles two types were reported: oxatub[n]arenes [31][32][33][34][35][36] and zorb[n]arenes [37]. These

Synthesis of a sucrose-based macrocycle with unsymmetrical monosaccharides "arms"

• Karolina Tiara,
• Mykhaylo A. Potopnyk and
• Sławomir Jarosz

Beilstein J. Org. Chem. 2018, 14, 634–641, doi:10.3762/bjoc.14.50

• -O-benzylsucrose with different unsaturated monosaccharide units is presented. Such a highly functionalized intermediate was cyclized under RCM conditions to afford a macrocyclic derivative containing a 31-membered ring in 26% yield. Keywords: chiral macrocycles; ring-closing metathesis; sucrose

Synthesis and spectroscopic properties of β-meso directly linked porphyrin–corrole hybrid compounds

• Baris Temelli and
• Hilal Kalkan

Beilstein J. Org. Chem. 2018, 14, 187–193, doi:10.3762/bjoc.14.13

• applications [21][22][23]. In order to achieve rapid energy and electron transfer between macrocycles, the short distance between subunits keeps an important place. Therefore, two important factors affect the physical and electronic properties of porphyrin–corrole conjugates: (i) type of linkers and (ii

• intramolecular energy transfer between macrocycles [38]. As a part of our ongoing research on porphyrin–corrole conjugates, herein we describe a convenient synthesis of a series of novel directly linked porphyrin–corrole hybrid compounds. For this purpose, acid-catalyzed reactions of dipyrromethanes and

• porphyrin arrays [41]. The para-proton (2), the meta-protons (3) and the ortho-protons (4) of the phenyl substituent appeared at 4.05 ppm, 4.64 ppm and 6.62 ppm, respectively. The β-protons of the porphyrin and the corrole macrocycles gave multiplets and doublets between 8.00 and 10.00 ppm as expected

Binding abilities of polyaminocyclodextrins: polarimetric investigations and biological assays

• Marco Russo,
• Daniele La Corte,
• Annalisa Pisciotta,
• Serena Riela,
• Rosa Alduina and
• Paolo Lo Meo

Beilstein J. Org. Chem. 2017, 13, 2751–2763, doi:10.3762/bjoc.13.271

• derivatives, obtained by anchoring suitable polyammonium or imidazolium pendant groups onto the main macrocycle scaffold [23][24][25][26][27][28]. The latter example is interesting, because of the well-known ability of these macrocycles to form inclusion complexes with diverse organic guest molecules [29][30

Binding abilities of a chiral calix[4]resorcinarene: a polarimetric investigation on a complex case of study

• Marco Russo and
• Paolo Lo Meo

Beilstein J. Org. Chem. 2017, 13, 2698–2709, doi:10.3762/bjoc.13.268

• variety of diversely modified CA derivatives existing, the binding abilities of these macrocycles have been subjected to less systematic and thorough studies [32][46][47][48] as compared to other classes of hosts such as CDs. With the aim at gaining a deeper understanding of the microscopic and

Synthesis and application of trifluoroethoxy-substituted phthalocyanines and subphthalocyanines

• Satoru Mori and
• Norio Shibata

Beilstein J. Org. Chem. 2017, 13, 2273–2296, doi:10.3762/bjoc.13.224

• phthalocyanines 25 and 26 [119]. When a rare earth element is used as the central metal of the phthalocyanine, it is known that phthalocyanine macrocycles form a double-decker phthalocyanine (DDPc) in which two macrocycles are coordinated above and below the metal [120][121]. The double-decker structure can be

Intramolecular glycosylation

• Xiao G. Jia and
• Alexei V. Demchenko

Beilstein J. Org. Chem. 2017, 13, 2028–2048, doi:10.3762/bjoc.13.201

• hydrogenation conditions followed by global acetylation. The results obtained with the 6-hydroxyglucopyranosyl acceptor were somewhat mixed [81]. Attaching the template at various positions of the acceptor to achieve either 16- or 17-membered macrocycles resulted in high yields of 90% and 82%, respectively

p-tert-Butylthiacalix[4]arenes functionalized by N-(4’-nitrophenyl)acetamide and N,N-diethylacetamide fragments: synthesis and binding of anionic guests

• Alena A. Vavilova and
• Ivan I. Stoikov

Beilstein J. Org. Chem. 2017, 13, 1940–1949, doi:10.3762/bjoc.13.188

• thiacalix[4]arene variously substituted at the lower rim form 1,2-, 1,3-di- and trisubstituted macrocycles [42], depending on the nature of the alkali metal carbonates and solvent. In this paper, we describe the regioselective synthesis of p-tert-butylthiacalix[4]arene monosubstituted at the lower rim by N

• observed in the IR spectra of the macrocycles 3 and 5 as a narrow and broadened bands in the region of 3383–3278 cm−1 (see Supporting Information File 1, Table S1). In the IR spectra of the compounds 4, 5 and 6, absorption bands of valence vibrations for the N,N-diethylacetamide group (ν 1658, 1648 and

• ][54][55][56][57]. Modified macrocycles with the amide fragments at the lower rim can form complexes with the anions by hydrogen bonds of the amide group with the guest. It was shown that (thia)calix[4]arene derivatives with urea and thiourea fragments at the lower rim can bind anions through hydrogen

Molecular recognition of N-acetyltryptophan enantiomers by β-cyclodextrin

• Spyros D. Chatziefthimiou,
• Mario Inclán,
• Petros Giastas,
• Athanasios Papakyriakou,
• Konstantina Yannakopoulou and
• Irene M. Mavridis

Beilstein J. Org. Chem. 2017, 13, 1572–1582, doi:10.3762/bjoc.13.157

• towards their 7-fold axis are small and close to their average values (7.1 and 7.7°, respectively). As in all β-CD dimeric complexes [28], the macrocycles’ conformation is stabilized by hydrogen bonds connecting (i) intramolecularly, the O-3n and O-2(n+1) atoms of neighboring glucopyranose units (mean

Synthesis of the heterocyclic core of the D-series GE2270

• Christophe Berini,
• Thibaut Martin,
• Pierrik Lassalas,
• Francis Marsais,
• Christine Baudequin and
• Christophe Hoarau

Beilstein J. Org. Chem. 2017, 13, 1407–1412, doi:10.3762/bjoc.13.137

• as readily available starting material. Keywords: antibiotic; bromination; BSC; C–H arylation; cross-coupling; Hantzsch synthesis; thiopeptide; Introduction Thiopeptide antibiotics are a class of peptide-derived macrocycles which contain many thiazole and thiazoline units, with almost 90 structures

One-pot synthesis of block-copolyrotaxanes through controlled rotaxa-polymerization

• Jessica Hilschmann,
• Gerhard Wenz and
• Gergely Kali

Beilstein J. Org. Chem. 2017, 13, 1310–1315, doi:10.3762/bjoc.13.127

• with macrocycles threaded on them [1][2][3][4]. In the case of polyrotaxanes, the dethreading of the macrocycles is prevented by bulky stopper groups placed along the chain or at the chain ends. The importance of these supramolecules lies in the possibility to modify the properties, or even cross-link

• polymers without chemical modification of the backbone. Through polyrotaxane formation solubility [2][3][4][5], as well as mechanical [1][2][3][6][7][8][9] and electrical properties [10], can be improved. Cross-linking of threaded macrocycles gives rise to so-called slide-ring gels with unique mechanical

• properties [6][11][12][13]. One of the most important class of important macrocycles, applied in polyrotaxane chemistry, are cyclodextrins (CDs) because they are nontoxic, biodegradable and available in industrial scale. Furthermore, CDs can be simply functionalized by modification of the hydroxy groups [14

Towards open-ended evolution in self-replicating molecular systems

• Herman Duim and
• Sijbren Otto

Beilstein J. Org. Chem. 2017, 13, 1189–1203, doi:10.3762/bjoc.13.118

• macrocycles of different sizes as depicted in Figure 12b. The design of the peptide chains is such that self-assembly of the chains into parallel β-sheets is promoted, which in turn leads to the formation of stacks of macrocycles as shown in Figure 12c. Growth of these stacks occurs exclusively via the ends

• doubled, leading to an exponential self-replication. In previous work it was already shown that the less hydrophobic building block 2 tends to form larger octameric macrocycles than the more hydrophobic building block 1 which forms hexamers [54]. This is reasonable, since a weaker hydrophobic interaction

• set I is the ancestor of set II. When macrocycles that are rich in building block 2 are exposed at the fiber ends of set I, they act as a template for the formation of members of set II. Indeed, significant amounts of set II members only form when a seed of set I is present that contains 2-enriched

An eco-compatible strategy for the diversity-oriented synthesis of macrocycles exploiting carbohydrate-derived building blocks

• Sushil K. Maurya and
• Rohit Rana

Beilstein J. Org. Chem. 2017, 13, 1106–1118, doi:10.3762/bjoc.13.110

• , greener solvents, easy purification and avoidance of hazards and toxic solvents are advantages of this protocol to access this important structural class. The diversity of the macrocycles synthesized (in total we have synthesized 13 macrocycles) using a set of standard reaction protocols demonstrate the

• potential of the new eco-compatible approach for the macrocyclic library generation. Keywords: carbohydrate; click chemistry; diversity-oriented synthesis; macrocycles; ring-closing metathesis; Introduction Macrocycles offer very complex molecular architectures with a diverse range of ring sizes decorated

• with many functional groups found application in pharmaceuticals, agrochemicals, cosmetics and materials science [1][2][3][4]. Carbohydrate-embedded macrocycles represent an important class of macrocyclic compounds in which at least two bonds from a monosaccharide residue form a part of the macrocyclic

Interactions between shape-persistent macromolecules as probed by AFM

• Johanna Blass,
• Jessica Brunke,
• Franziska Emmerich,
• Cédric Przybylski,
• Vasil M. Garamus,
• Artem Feoktystov,
• Roland Bennewitz,
• Gerhard Wenz and
• Marcel Albrecht

Beilstein J. Org. Chem. 2017, 13, 938–951, doi:10.3762/bjoc.13.95

• ; shape persistent polymers; Introduction Shape-persistence is an important key feature in self-organisation strategies of supramolecular building blocks resulting in high structural perfection of the obtained molecular assemblies [1], such as shape persistent macrocycles, cage compounds or rotaxanes [2

Inclusion complexes of β-cyclodextrin with tricyclic drugs: an X-ray diffraction, NMR and molecular dynamics study

• Franca Castiglione,
• Fabio Ganazzoli,
• Luciana Malpezzi,
• Andrea Mele,
• Walter Panzeri and
• Giuseppina Raffaini

Beilstein J. Org. Chem. 2017, 13, 714–719, doi:10.3762/bjoc.13.70

• antiparallel columns along the crystallographic b axis. Within each column, the molecules are linked by hydrogen bonding involving both the macrocycles and the guest molecules, while interactions between macrocycles link adjacent columns. A large network of H-bonds involving the water molecules contribute to

Pd- and Cu-catalyzed approaches in the syntheses of new cholane aminoanthraquinone pincer-like ligands

• Nikolay V. Lukashev,
• Gennadii A. Grabovyi,
• Dmitry A. Erzunov,
• Alexey V. Kazantsev,
• Gennadij V. Latyshev,
• Alexei D. Averin and
• Irina P. Beletskaya.

Beilstein J. Org. Chem. 2017, 13, 564–570, doi:10.3762/bjoc.13.55

• macrocycles by Pd-catalyzed Buchwald–Hartwig amination [36]. Though this method is often preferable for the macrocyclization in comparison to classical nucleophilic substitution [28][31], it is limited to bile acid derivatives bearing groups with C(sp2)–Hal bonds. In addition, the use of bile acid moieties

Efficient access to β-vinylporphyrin derivatives via palladium cross coupling of β-bromoporphyrins with N-tosylhydrazones

• Vinicius R. Campos,
• Ana T. P. C. Gomes,
• Anna C. Cunha,
• Maria da Graça P. M. S. Neves,
• Vitor F. Ferreira and
• José A. S. Cavaleiro

Beilstein J. Org. Chem. 2017, 13, 195–202, doi:10.3762/bjoc.13.22

• diversity of structural features that can be induced in the porphyrin structure [14][15][16]. Alkenyl-type moieties are examples of versatile functional groups which are present in several biologically active natural porphyrin derivatives or are substituents that can be introduced into the macrocycles

• , affording in such way important intermediates for different synthetic strategies [4][17][18]. There are methods available allowing the insertion of alkenyl groups into porphyrin macrocycles (e.g., Heck reaction [4], metathesis [7][19][20][21], Wittig reaction [22][23]). However, palladium-catalyzed cross

• -tetraphenylporphyrinatozinc(II) (1) and N-tosylhydrazone derivatives 2a–c gave rise to the new β-alkenylporphyrin derivatives 3a–c in excellent yields (between 86–89%). This is the first report using this methodology in the functionalization of tetrapyrrolic macrocycles. The new compounds that can be achieved by this

A direct method for the N-tetraalkylation of azamacrocycles

• Andrew J. Counsell,
• Angus T. Jones,
• Matthew H. Todd and
• Peter J. Rutledge

Beilstein J. Org. Chem. 2016, 12, 2457–2461, doi:10.3762/bjoc.12.239

• ]. This is due in part to the versatility of these macrocycles towards N-functionalisation, in part to the tendency of functionalised cyclams and cyclens to coordinate selectively a wide range of metal cations, and in part to the diverse and interesting physical and chemical behaviour displayed by the

• peptide-based disulfide macrocycles in a dynamic combinatorial library [49]. They observed different product distributions when reaction mixtures were shaken than when stirred, concluding that “mechanical forces can ... determine the outcome of a covalent synthesis” and that the ‘mechanosensitivity’ of

• ), NaOH (1 M), RCH2Br (4.1 equivalents), rt, 6 h; R = C≡CH (3 and 8), C6H5 (4 and 9), o-bromophenyl (5 and 10), p-nitrophenyl (6 and 11), 2-naphthyl (7 and 12, see Table 1 for yields.). Direct synthesis of N-tetraalkylated macrocycles 3–12 from cyclam (1) and cyclen (2). Supporting Information Supporting

Biosynthesis of oxygen and nitrogen-containing heterocycles in polyketides

• Franziska Hemmerling and
• Frank Hahn

Beilstein J. Org. Chem. 2016, 12, 1512–1550, doi:10.3762/bjoc.12.148

• macrocycles or more rarely medium-sized and small cycles with defined size. Type II and type III PKS are mono-modular and form aromatic structures. Their gene clusters can contain additional cyclase/aromatase domains and a chain-length factor that together force particular folding patterns of a polyketone

Cyclisation mechanisms in the biosynthesis of ribosomally synthesised and post-translationally modified peptides

• Andrew W. Truman

Beilstein J. Org. Chem. 2016, 12, 1250–1268, doi:10.3762/bjoc.12.120

• macrocyclisation found in NRP biosynthesis, although the energetic demands of breaking an amide bond versus a thioester bond are notably different. PatG may have synthetic utility, as studies with unnatural substrates have shown that macrocycles of between 5–22 residues can be produced [108], despite it naturally