Preparation of trinucleotide phosphoramidites as synthons for the synthesis of gene libraries

• Ruth Suchsland,
• Bettina Appel and
• Sabine Müller

Beilstein J. Org. Chem. 2018, 14, 397–406, doi:10.3762/bjoc.14.28

• -carboxyethyl)phosphine (TCEP, Figure 6) leaving all other protecting groups intact. The resulting hemi-(S,O)-acetal at the nucleotiode 3'-terminus is spontaneously degraded into the alcohol and thioformaldehyde, thus delivering the trimer with free 3'-OH group for subsequent phosphitylation. The detailed

One-pot sequential synthesis of tetrasubstituted thiophenes via sulfur ylide-like intermediates

• Jun Ki Kim,
• Hwan Jung Lim,
• Kyung Chae Jeong and
• Seong Jun Park

Beilstein J. Org. Chem. 2018, 14, 243–252, doi:10.3762/bjoc.14.16

• already been achieved by the intramolecular aldol-type condensation of N,S-acetal 7a (Figure 2C). Subsequently, we investigated the scope of the reaction using our optimized conditions (Scheme 1). As shown in Scheme 1, various isothiocyanates containing aryl and alkyl groups were applied, and the desired

• yield (32%). Starting from malonitrile, compound 8an was also prepared in a moderate yield (50%) via a Thorpe–Ziegler-type cyclization of N,S-acetal 7an. In this case, the intramolecular cyclization reaction was carried out at 100 °C for 3 h. With 5,5-dimethylcyclohexane-1,3-dione, thiophene 8ao was

• position (Table 1, entries 1 to 5). Interestingly, the 2-pyridyl moiety provided stable and reactive N,S-acetal 7aa, which could be isolated and afforded the desired thiophene 8aa in an excellent yield (92%, Table 1, entry 1). The substrate containing a 3-pyridyl group only afforded S-alkylated compound 7b

5-Aminopyrazole as precursor in design and synthesis of fused pyrazoloazines

• Ranjana Aggarwal and
• Suresh Kumar

Beilstein J. Org. Chem. 2018, 14, 203–242, doi:10.3762/bjoc.14.15

• CaCO-2. Lin et al. [52] developed the synthesis of pyrazolo[3,4-b]pyridine derivatives 45 via aza-Diels–Alder reaction of pyrazolylimines 43 with maleimides 44 (Scheme 8). Pyrazolylimines 43 were in turn obtained from the reaction of 5-aminopyrazole 16 with diisopropylformamide dimethyl acetal (R

• of 5-amino-4-cyanopyrazole 208 with N,N-dimethylformamide dimethyl acetal (DMFDMA) in acetonitrile at reflux temperature. Amidines 219 were condensed with appropriate 2-amino-5-subsitituted-1,3,4-thiadiazoles 220 under microwave irradiation in acetic acid for the generation of the desired pyrazolo

Nucleophilic fluoroalkylation/cyclization route to fluorinated phthalides

• Masanori Inaba,
• Tatsuya Sakai,
• Shun Shinada,
• Tsuyuka Sugiishi,
• Yuta Nishina,
• Norio Shibata and
• Hideki Amii

Beilstein J. Org. Chem. 2018, 14, 182–186, doi:10.3762/bjoc.14.12

• (Scheme 4) [12]. Only diastereoisomer 6 was detected in the NMR analysis. Acid-promoted deprotection of hemiaminal 6 and subsequent oxidation of acetal 7 gave the enantiopure phthalide 1a in good yield. Although a high control of diastereoselectivity (using stoichiometric auxiliary strategy) was achieved

Gram-scale preparation of negative-type liquid crystals with a CF₂CF₂-carbocycle unit via an improved short-step synthetic protocol

• Tatsuya Kumon,
• Shohei Hashishita,
• Takumi Kida,
• Shigeyuki Yamada,
• Takashi Ishihara and
• Tsutomu Konno

Beilstein J. Org. Chem. 2018, 14, 148–154, doi:10.3762/bjoc.14.10

• leads to the formation of the corresponding magnesium acetal Int-D, (ii) the alkoxide attacks another ester carbonyl moiety in the molecule to form the corresponding 5-membered ring acetal intermediate (Int-E) [15][16][17], after which immediate hydrolysis leads to the exclusive formation of the

Aminomethylation/hydrogenolysis as an alternative to direct methylation of metalated isoquinolines – a novel total synthesis of the alkaloid 7-hydroxy-6-methoxy-1-methylisoquinoline

• Benedikt C. Melzer,
• Jan G. Felber and
• Franz Bracher

Beilstein J. Org. Chem. 2018, 14, 130–134, doi:10.3762/bjoc.14.8

• starting aldehyde 2 was subjected to a reductive amination with aminoacetaldehyde dimethyl acetal and NaBH4, followed by N-tosylation and hydrochloric acid-mediated cyclization under concomitant N-detosylation and aromatization. Direct ring metalation of 3 with TMPMgCl∙LiCl was performed as described by us

Aminosugar-based immunomodulator lipid A: synthetic approaches

• Alla Zamyatina

Beilstein J. Org. Chem. 2018, 14, 25–53, doi:10.3762/bjoc.14.3

• starting from azide 1 by first protecting the 3-OH group with an allyloxycarbonyl (Alloc) protecting group followed by regioselective reductive opening of the 4,6-O-benzylidene acetal using NaCNBH3 and HCl in diethyl ether, and successive phosphitylation of the liberated 4’-OH functionality with N,N

• reductive opening of benzylidene acetal using the borane−THF complex in the presence of Bu2BOTf. Regioselective TMSOTf-catalysed glycosylation of the diol 4 by the imidate donor 3 resulted in the formation of a single product, the β(1→6)-linked disaccharide 5. After the 2’-N-Fmoc group in 5 was removed with

• the azido function with zinc in acetic acid followed by acylation of the liberated amino group with the long-chain acyloxyacyl fatty acid furnished fully acylated 16. In the next steps, the isopropylidene acetal and anomeric TDS ether were removed by treatment with aqueous TFA and the anomeric

Quinone-catalyzed oxidative deformylation: synthesis of imines from amino alcohols

• Xinyun Liu,
• Johnny H. Phan,
• Benjamin J. Haugeberg,
• Shrikant S. Londhe and
• Michael D. Clift

Beilstein J. Org. Chem. 2017, 13, 2895–2901, doi:10.3762/bjoc.13.282

• this reaction sequence, (thio)silyl ketene acetal 10 was united with 2-phenylglycinol and para-anisidine in a two-step, one-pot process to provide β-amino acid derivative 11 in a 60% yield. The overall reaction sequence provides a unique method for the production of the high-value β-amino acid

The synthesis of the 2,3-difluorobutan-1,4-diol diastereomers

• Robert Szpera,
• Nadia Kovalenko,
• Kalaiselvi Natarajan,
• Nina Paillard and
• Bruno Linclau

Beilstein J. Org. Chem. 2017, 13, 2883–2887, doi:10.3762/bjoc.13.280

• substituents is of interest. Here we describe optimisation efforts in the synthesis of anti-2,3-difluorobutane-1,4-diol, as well as the synthesis of the corresponding syn-diastereomer. Both targets were synthesised using an epoxide opening strategy. Keywords: acetal isomerization; deoxyfluorination; epoxide

• increase). An investigation to use the much smaller acetonide protecting group, which can be used for the cis-1,4-butenediol starting material, was carried out. It was found that the use of Et3N·3HF for the epoxide opening step also lead to acetal rearrangement, leading to a more stable 1,3-dioxolane ring

CF₃SO₂X (X = Na, Cl) as reagents for trifluoromethylation, trifluoromethylsulfenyl-, -sulfinyl- and -sulfonylation. Part 1: Use of CF₃SO₂Na

• Hélène Guyon,
• Hélène Chachignon and
• Dominique Cahard

Beilstein J. Org. Chem. 2017, 13, 2764–2799, doi:10.3762/bjoc.13.272

• allowing access to various β-trifluoromethyl ketones 24 featuring aryl, alkyl, functionalised alkyl, alkenyl, acetal, silylated alcohol, pyran, and piperidine functionalities (R group in 24). Mechanistic studies by 19F NMR allowed to identify CF3 complexes of copper(I) and copper(III) and the predominance

Asymmetric synthesis of propargylamines as amino acid surrogates in peptidomimetics

• Matthias Wünsch,
• David Schröder,
• Tanja Fröhr,
• Lisa Teichmann,
• Sebastian Hedwig,
• Nils Janson,
• Clara Belu,
• Jasmin Simon,
• Shari Heidemeyer,
• Philipp Holtkamp,
• Jens Rudlof,
• Lennard Klemme,
• Alessa Hinzmann,
• Beate Neumann,
• Hans-Georg Stammler and
• Norbert Sewald

Beilstein J. Org. Chem. 2017, 13, 2428–2441, doi:10.3762/bjoc.13.240

• (OiPr)4 and AlMe3 and gave only low yields of the desired N-sulfinyl propargylamine 6k. The reaction of crude 5k in the presence of the Lewis acid Ti(OiPr)4 afforded the N/O-acetal 9k, whereas the attempt of activation with AlMe3 provided the methylated sulfinamide 10k. Both side products were isolated

• as colorless crystalline solids. It is assumed, that the undesired side products 9k and 10k were formed by a ligand transfer from the Lewis acids to imine 5k. Nucleophilic substitution of N/O-acetal 9k with two equivalents of (trimethylsilyl)ethynyllithium, in analogy to the conversions reported by

Phosphonic acid: preparation and applications

• Charlotte M. Sevrain,
• Mathieu Berchel,
• Hélène Couthon and
• Paul-Alain Jaffrès

Beilstein J. Org. Chem. 2017, 13, 2186–2213, doi:10.3762/bjoc.13.219

• is illustrated by the recent works reporting the reaction of bis(diethylamino)chlorophosphine (95) with the acetal 96 in the presence of a Lewis acid to yield the phosphonodiamide 97. Then the nucleophilic addition of adenine and the hydrolysis of the phosphonodiamide function in phosphonic acid

Intramolecular glycosylation

• Xiao G. Jia and
• Alexei V. Demchenko

Beilstein J. Org. Chem. 2017, 13, 2028–2048, doi:10.3762/bjoc.13.201

• by Ito and Ogawa who implemented DDQ-mediated oxidative transformation of the p-methoxybenzyl (PMB) protecting group at the C-2 position of the donor into a tethering mixed acetal with a hydroxy group of the acceptor [94]. The early studies have successfully applied this PMB-based IAD method to the

• stereoselectivity. Thus, mixed acetal 76 can be readily formed in 2 h by the addition of DDQ to a mixture of donor 74 and acceptor 75. Without further purification, the latter mixture can be glycosylated in the presence of MeOTf and DTBMP followed by acetylation to give disaccharide 77 in an excellent yield of 90

Accessing simply-substituted 4-hydroxytetrahydroisoquinolines via Pomeranz–Fritsch–Bobbitt reaction with non-activated and moderately-activated systems

• Marco Mottinelli,
• Mathew P. Leese and
• Barry V. L. Potter

Beilstein J. Org. Chem. 2017, 13, 1871–1878, doi:10.3762/bjoc.13.182

• could be telescoped into a one-pot reaction was investigated. This reaction proceeded to deliver good to excellent yields of the desired aminoacetals 9a–g,i–p accompanied by only a small amount of side products (Table 1). As an exception to the above, the acetal 9h did not form, which could be

• the acetal 9l to give the corresponding aldehyde followed by its rapid conversion into THIQ 10l within the first ten minutes of the reaction. Despite the indication that the reaction proceeded through an initial complete conversion of the acetal to the aldehyde, in certain cases the formation of the

• ethers 15 was identified (Scheme 5). The formation of the two derivatives could be controlled through changes in the reaction concentration (Table 3). When 9f was dissolved in sufficient 6 M HCl necessary to provide a 1 M solution of the acetal, the main product obtained was the 4-hydroxy-THIQ. However

The chemistry and biology of mycolactones

• Matthias Gehringer and
• Karl-Heinz Altmann

Beilstein J. Org. Chem. 2017, 13, 1596–1660, doi:10.3762/bjoc.13.159

• acidic conditions furnished the acetal-protected extended core structure 28. In summary, Kishi’s 1st generation synthesis provided the extended mycolactone core in a longest linear sequence of 17 steps in 1.3% overall yield from known homoallylic silyl ether 20 [133]; the latter had to be prepared in

Synthesis of oligonucleotides on a soluble support

• Harri Lönnberg

Beilstein J. Org. Chem. 2017, 13, 1368–1387, doi:10.3762/bjoc.13.134

• commercially available building blocks turned out to be too hydrophobic to allow precipitation of the support-bound oligonucleotides from MeOH. The 1-methoxy-1-methylethyl group could be removed quantitatively as a dimethyl acetal of acetone upon acid-catalyzed transesterification in MeOH. The 3'-terminal

Synthesis of alkynyl-substituted camphor derivatives and their use in the preparation of paclitaxel-related compounds

• M. Fernanda N. N. Carvalho,
• Rudolf Herrmann and
• Gabriele Wagner

Beilstein J. Org. Chem. 2017, 13, 1230–1238, doi:10.3762/bjoc.13.122

• the sensitivity of the alkyne to oxidising conditions. Our next strategy was to modify the carbonyl group in the 3-position and introduce the alkyne at the sulfonamide side, as shown in Scheme 5 and Scheme 6. The carbonyl group in 3 can be selectively protected as an acetal by reaction with

• for the synthesis of 12 and 13 introduced the alkyne into the 2-position of the camphor skeleton, to provide the sultams 17. The removal of the acetal-protecting group occurred under comparatively mild conditions by stirring a mixture of 17 with acetone and conc. HCl. Acetone as solvent was best as it

• allows for trans-acetalisation to acetone dimethylacetal and 12 rather than hydrolysis to methanol and 12. Overall, yields are higher throughout when the methyl acetal is used. To obtain the camphor-derived hydroxysultam 18 bearing an alkyne substituent in 2-position rather than in 3-position, 12 was

Sugar-based micro/mesoporous hypercross-linked polymers with in situ embedded silver nanoparticles for catalytic reduction

• Qing Yin,
• Qi Chen,
• Li-Can Lu and
• Bao-Hang Han

Beilstein J. Org. Chem. 2017, 13, 1212–1221, doi:10.3762/bjoc.13.120

• .13.120 Abstract Porous hypercross-linked polymers based on perbenzylated monosugars (SugPOP-1–3) have been synthesized by Friedel–Crafts reaction using formaldehyde dimethyl acetal as an external cross-linker. Three perbenzylated monosugars with similar chemical structure were used as monomers in order

• -linkers [4], and self-polycondensation of small molecular monomers [5]. Since the Tan group proposed the new synthetic strategy that "knits" low functionality rigid aromatic compounds with formaldehyde dimethyl acetal (FDA) as an external cross-linking agent through a Friedel–Crafts reaction to synthesize

• AgNPs/SugPOP-1 composite. Time-dependent UV–vis spectral changes (a) and the kinetic curve (b) for the catalytic reduction of 4-nitrophenol (4-NP) to 4-aminophenol (4-AP) at room temperature. Preparation of polymers SugPOP-1–3 (FDA: formaldehyde dimethyl acetal). The preparation of AgNPs/SugPOP-1

Synthesis of D-manno-heptulose via a cascade aldol/hemiketalization reaction

• Yan Chen,
• Xiaoman Wang,
• Junchang Wang and
• You Yang

Beilstein J. Org. Chem. 2017, 13, 795–799, doi:10.3762/bjoc.13.79

• spectra of 8 (see Supporting Information File 1 for details). Cleavage of the isopropylidene acetal group in 8 under acidic conditions gave diol 9 (50%). However, oxidative cleavage of diol 9 with sodium periodate resulted in the unexpected formation of α,β-unsaturated aldehyde 10 in 71% yield, indicating

• isopropylidene acetal group in 7 was cleaved under acidic conditions to produce triol 11 in 86% yield (Scheme 3). Cleavage of the resulting vicinal diol in 11 with sodium periodate led to the C4 aldehyde 3 in nearly 60–70% yield. In this oxidative cleavage reaction, almost no elimination product was found based

• excellent yield (91%). Saponification of all esters in 16 with potassium carbonate followed by acidic cleavage of the isopropylidene acetal group with aqueous acetic acid furnished D-manno-heptulose (1, 76% over two steps). The structure of 1 was found to be in good agreement with those reported for α-D

Synthesis of ribavirin 2’-Me-C-nucleoside analogues

• Fanny Cosson,
• Aline Faroux,
• Jean-Pierre Baltaze,
• Jonathan Farjon,
• Régis Guillot,
• Jacques Uziel and
• Nadège Lubin-Germain

Beilstein J. Org. Chem. 2017, 13, 755–761, doi:10.3762/bjoc.13.74

• a partially deprotected compound (only acetal deprotected), stemming from 9b, demonstrating the different hydrolysis rate of each regioisomer. An HPLC analysis of the disappearance of 9a and 9b and the formation of 10a and 10b showed a ratio of 2:1 in favor of regioisomer 10a. The hydrolysis was

Fluorescent carbon dots from mono- and polysaccharides: synthesis, properties and applications

• Stephen Hill and
• M. Carmen Galan

Beilstein J. Org. Chem. 2017, 13, 675–693, doi:10.3762/bjoc.13.67

• uniform surface state giving a single quantum dot-like emission profile. This interesting report highlights the fact that a reducing sugar is not essential to produce CDs and that under acidic and forcing conditions this type of starting materials can still undergo acetal hydrolysis, dehydration

Total synthesis of a Streptococcus pneumoniae serotype 12F CPS repeating unit hexasaccharide

• Peter H. Seeberger,
• Claney L. Pereira and
• Subramanian Govindan

Beilstein J. Org. Chem. 2017, 13, 164–173, doi:10.3762/bjoc.13.19

• subsequently converted to the fucosyl trichloroacetimidate building block 8 (Scheme 5). Galactosyl thioglycoside 9 was prepared from D-galactose following published procedures [32]. Reductive opening of the benzylidene acetal of known galactosyl thioglycoside 29 [33] with triethylsilane [34] in TFA/CH2Cl2

Solution-phase automated synthesis of an α-amino aldehyde as a versatile intermediate

• Hisashi Masui,
• Sae Yosugi,
• Shinichiro Fuse and
• Takashi Takahashi

Beilstein J. Org. Chem. 2017, 13, 106–110, doi:10.3762/bjoc.13.13

• -8503, Japan 10.3762/bjoc.13.13 Abstract A solution-phase automated synthesis of the versatile synthetic intermediate, Garner’s aldehyde, was demonstrated. tert-Butoxycarbonyl (Boc) protection, acetal formation, and reduction of the ester to the corresponding aldehyde were performed utilizing our

• originally developed automated synthesizer, ChemKonzert. The developed procedure was also useful for the synthesis of Garner’s aldehyde analogues possessing fluorenylmethyloxycarbonyl (Fmoc) or benzyloxycarbonyl (Cbz) protection. Keywords: acetal formation; amino acid; automated synthesis; Garner’s aldehyde

• manually concentrated in vacuo. The obtained residue was purified manually using silica gel column chromatography. Carbamate 2a was obtained in 82% yield. Acetal formation was also demonstrated using ChemKonzert. A solution of substrate 2a in dichloromethane was stirred at 25 °C in the reaction vessel (RF1

Silyl-protective groups influencing the reactivity and selectivity in glycosylations

• Mikael Bols and
• Christian Marcus Pedersen

Beilstein J. Org. Chem. 2017, 13, 93–105, doi:10.3762/bjoc.13.12

• 3,5-O-(tetraisopropyldisilylene)acetal and also found the arabinofuranolysations to be β-selective, despite the more flexible system [63]. Interestingly it was recently found that exchanging the 3,5-DTBS group with trifluoroacetates retained a high β-selectivity, which suggests that the

New approaches to organocatalysis based on C–H and C–X bonding for electrophilic substrate activation

• Pavel Nagorny and
• Zhankui Sun

Beilstein J. Org. Chem. 2016, 12, 2834–2848, doi:10.3762/bjoc.12.283

• followed by anion exchange. The resultant oxocarbenium/tetraphenylborate ion pair undergoes a nucleophilic attack by silyl ketene acetal, which is followed by scavenging the trimethylsilyl cation with a chloride anion to result in chlorotrimethylsilane and the product. Mechanistic studies were conducted to