Allylic cross-coupling using aromatic aldehydes as α-alkoxyalkyl anions

• Akihiro Yuasa,
• Kazunori Nagao and
• Hirohisa Ohmiya

Beilstein J. Org. Chem. 2020, 16, 185–189, doi:10.3762/bjoc.16.21

• JP17H06449 (Hybrid Catalysis), and Kanazawa University SAKIGAKE project 2018 (to H.O.).

The use of isoxazoline and isoxazole scaffolding in the design of novel thiourea and amide liquid-crystalline compounds

• Itamar L. Gonçalves,
• Rafaela R. da Rosa,
• Vera L. Eifler-Lima and
• Aloir A. Merlo

Beilstein J. Org. Chem. 2020, 16, 175–184, doi:10.3762/bjoc.16.20

• previously published [19][21][22][23][24]. The synthetic route used for the synthesis of the hybrid compounds, N-acyl-N'-isoxazolinylthioureas 17a–c and N-acyl-N'- isoxazolylthioureas 18a–c is outlined in Scheme 2. The synthesis of thioureas 17a–c and 18a–c involved the activation of 4-heptyloxybenzoic acid

Understanding the role of active site residues in CotB2 catalysis using a cluster model

• Keren Raz,
• Ronja Driller,
• Thomas Brück,
• Bernhard Loll and
• Dan T. Major

Beilstein J. Org. Chem. 2020, 16, 50–59, doi:10.3762/bjoc.16.7

• provide important information to derive a synthetic strategy for cyclooctatin and related terpene manufacturing. Future studies using hybrid quantum mechanics and molecular mechanics techniques to model the enzyme reaction in a complete enzyme environment will allow careful evaluation of the usefulness of

Why do thioureas and squaramides slow down the Ireland–Claisen rearrangement?

• Dominika Krištofíková,
• Juraj Filo,
• Mária Mečiarová and
• Radovan Šebesta

Beilstein J. Org. Chem. 2019, 15, 2948–2957, doi:10.3762/bjoc.15.290

• quantum-chemical calculations employing long-range corrected hybrid density ωB97X-D functional [42]. This dispersion-corrected functional displays very balanced overall performances and has demonstrated excellent treatment of noncovalent interactions [43], which are very important in our studied system

• corrected hybrid density ωB97X-D functional showed that thioureas and squaramides stabilize the starting ground state more than the corresponding transitions states. This fact leads to a higher activation barrier and slower reactions in the presence of hydrogen-bond donating organocatalysts. On the other

Palladium-catalyzed Sonogashira coupling reactions in γ-valerolactone-based ionic liquids

• László Orha,
• József M. Tukacs,
• László Kollár and
• László T. Mika

Beilstein J. Org. Chem. 2019, 15, 2907–2913, doi:10.3762/bjoc.15.284

• File 1. Exact mass measurements were performed on a high-resolution Q-Exactive Focus hybrid quadrupole-orbitrap mass spectrometer (Thermo Fisher Scientific, Bremen, Germany) equipped with a heated electrospray ionization (ESI) source. Samples were dissolved in acetonitrile/water 1:1 (v/v) solvent

Preparation of anthracene-based tetraperimidine hexafluorophosphate and selective recognition of chromium(III) ions

• Qing-Xiang Liu,
• Feng Yang,
• Zhi-Xiang Zhao,
• Shao-Cong Yu and
• Yue Ding

Beilstein J. Org. Chem. 2019, 15, 2847–2855, doi:10.3762/bjoc.15.278

• Qing-Xiang Liu Feng Yang Zhi-Xiang Zhao Shao-Cong Yu Yue Ding Tianjin Key Laboratory of Structure and Performance for Functional Molecules, MOE Key Laboratory of Inorganic-Organic Hybrid Functional Material Chemistry, College of Chemistry, Tianjin Normal University, Tianjin 300387, P. R. China

A combinatorial approach to improving the performance of azoarene photoswitches

• Joaquin Calbo,
• Aditya R. Thawani,
• Rosina S. L. Gibson,
• Andrew J. P. White and
• Matthew J. Fuchter

Beilstein J. Org. Chem. 2019, 15, 2753–2764, doi:10.3762/bjoc.15.266

• the possible conformers both in the Z- and E-forms were fully optimized by using the hybrid exchange-correlation PBE0 functional [37] including the Grimme’s dispersion correction in its latest version (D3) [38]. The split-valence Pople’s basis set 6-31G** was used throughout [39]. Transition states

A review of asymmetric synthetic organic electrochemistry and electrocatalysis: concepts, applications, recent developments and future directions

• Munmun Ghosh,
• Valmik S. Shinde and
• Magnus Rueping

Beilstein J. Org. Chem. 2019, 15, 2710–2746, doi:10.3762/bjoc.15.264

• following publication [36]. The same group, in 2014, published two concomitant reports on the synthesis of metallo-organic hybrid materials by means of entrapment of alkaloids within silver particles [37][38]. They further used this organically doped metal as cathode for the enantioselective

Plasma membrane imaging with a fluorescent benzothiadiazole derivative

• Pedro H. P. R. Carvalho,
• Jose R. Correa,
• Karen L. R. Paiva,
• Daniel F. S. Machado,
• Jackson D. Scholten and
• Brenno A. D. Neto

Beilstein J. Org. Chem. 2019, 15, 2644–2654, doi:10.3762/bjoc.15.257

• position associated with the π–π* transitions, as expected for this type of 4,7-disubstituted BTDs [46][47][48][49][50]. In Figure 3 the mean absolute error (MAE) between the theoretical and experimental absorption maxima (λmax) in different solvents is shown. The results showed the hybrid XCF, PBE1PBE

• (GGA level) and ωB97XD (long range-corrected hybrid level) XCFs were employed. Both B97D3 and ωB97XD were strongly recommended by a thoroughly benchmarking of DFT methods for thermochemistry by Goerik and Grimme [55]. The new dye was then submitted to an MTT assay to investigate possible cytotoxicity

Nanangenines: drimane sesquiterpenoids as the dominant metabolite cohort of a novel Australian fungus, Aspergillus nanangensis

• Heather J. Lacey,
• Cameron L. M. Gilchrist,
• Andrew Crombie,
• John A. Kalaitzis,
• Daniel Vuong,
• Peter J. Rutledge,
• Peter Turner,
• John I. Pitt,
• Ernest Lacey,
• Yit-Heng Chooi and
• Andrew M. Piggott

Beilstein J. Org. Chem. 2019, 15, 2631–2643, doi:10.3762/bjoc.15.256

• an Apollo II ESI/MALDI Dual source or a Q Exactive Plus hybrid quadrupole-Orbitrap mass spectrometer (Thermo Fisher Scientific, Bremen, Germany) by direct infusion. NMR data were recorded in DMSO-d6 on either a Bruker Avance III 500 or a Bruker Avance II DRX-600K spectrometer. All NMR spectra were

Anion-driven encapsulation of cationic guests inside pyridine[4]arene dimers

• Anniina Kiesilä,
• Jani O. Moilanen,
• Anneli Kruve,
• Christoph A. Schalley,
• Perdita Barran and
• Elina Kalenius

Beilstein J. Org. Chem. 2019, 15, 2486–2492, doi:10.3762/bjoc.15.241

• dispersion correction (hydrogen bond lengths are listed in Table S2, Supporting Information File 1). This is expected, because the standard hybrid functionals are able to describe strong hydrogen bonds such as NH···O and OH···O in a reasonable manner [31][32]. Due to the encapsulated guest molecule, the [12

Experimental and computational electrochemistry of quinazolinespirohexadienone molecular switches – differential electrochromic vs photochromic behavior

• Eric W. Webb,
• Jonathan P. Moerdyk,
• Kyndra B. Sluiter,
• Benjamin J. Pollock,
• Amy L. Speelman,
• Eugene J. Lynch,
• William F. Polik and
• Jason G. Gillmore

Beilstein J. Org. Chem. 2019, 15, 2473–2485, doi:10.3762/bjoc.15.240

• node (dual Intel X5650 CPU, with 6 cores running at 2.66 GHz) using the Gaussian 09 [30] software package implemented through the WebMO [26] graphical user interface. Restricted open-shell Hartree-Fock (ROHF) theory [31] with the Becke 3, Lee, Yang, and Parr (B3LYP) hybrid functional [32][33][34] was

Combining the Ugi-azide multicomponent reaction and rhodium(III)-catalyzed annulation for the synthesis of tetrazole-isoquinolone/pyridone hybrids

• Gerardo M. Ojeda,
• Prabhat Ranjan,
• Pavel Fedoseev,
• Lisandra Amable,
• Upendra K. Sharma,
• Daniel G. Rivera and
• Erik V. Van der Eycken

Beilstein J. Org. Chem. 2019, 15, 2447–2457, doi:10.3762/bjoc.15.237

• rhodium(III)-catalyzed intermolecular annulation has been established for the preparation of tetrazole-isoquinolone/pyridone hybrids. Several N-acylaminomethyltetrazoles were reacted with arylacetylenes to form the hybrid products in moderate to very good yields. The method relies on the capacity of the

• , which has been considered of interest for medicinal chemistry applications [7][8]. In recent years, the preparation of hybrid heterocyclic scaffolds including the tetrazole ring (either fused or linked to other heterocycles) has rendered potent bioactive compounds [9][10][11][12][13], which confirms the

• incorporation of three different diversity-generating sites (Scheme 1A), a feature that has been exploited for the construction of libraries of tetrazole-based compounds with potential bioactivity [9][10][11][12][19]. A powerful approach for obtaining hybrid heterocyclic compounds including the tetrazole ring

Targeted photoswitchable imaging of intracellular glutathione by a photochromic glycosheet sensor

• Xianzhi Chai,
• Hai-Hao Han,
• Yi Zang,
• Jia Li,
• Xiao-Peng He,
• Junji Zhang and
• He Tian

Beilstein J. Org. Chem. 2019, 15, 2380–2389, doi:10.3762/bjoc.15.230

• integrate these functions into one molecule. By taking advantages of both redox-active/high loading features of two-dimensional (2D) manganese dioxide (MnO2) and dynamic fluorescence photoswitching of photochromic sensors, we here design a hybrid photochromic MnO2 glycosheet (Glyco-DTE@MnO2) to achieve the

• design and further broaden the availability of photoswitchable biosensing, herein we report a glycosheet hybrid sensor (Glyco-DTE@MnO2) fabricated by 2D MnO2 nanosheets and dithienylethene fluorescence reporter (Glyco-DTE) to achieve cell-targeted photoswitchable imaging of intracellular GSH. As shown in

• as biosensing/imaging, bioactivity modulation, drug delivery, etc [23][24]. In our system, the Glyco-DTE@MnO2 hybrid sensor undergoes decomposition when encountering the overexpressed intracellular GSH in HepG2 cell lines, following the recovery of the photoswitchable fluorescence signal regulated by

Small anion-assisted electrochemical potential splitting in a new series of bistriarylamine derivatives: organic mixed valency across a urea bridge and zwitterionization

• Keishiro Tahara,
• Tetsufumi Nakakita,
• Alyona A. Starikova,
• Takashi Ikeda,
• Masaaki Abe and
• Jun-ichi Kikuchi

Beilstein J. Org. Chem. 2019, 15, 2277–2286, doi:10.3762/bjoc.15.220

• performed using the Gaussian09 software [63]. The three-parameterized Becke–Lee–Yang–Parr (B3LYP) hybrid exchange-correlation functional [64] was selected using the 6-31G(d) basis set for 1a and 1b with a restricted method and using the 6-311++G(d,p) basis set for the MV species with an unrestricted method

Aggregation-induced emission effect on turn-off fluorescent switching of a photochromic diarylethene

• Luna Kono,
• Yuma Nakagawa,
• Ayako Fujimoto,
• Ryo Nishimura,
• Yohei Hattori,
• Toshiki Mutai,
• Nobuhiro Yasuda,
• Kenichi Koizumi,
• Satoshi Yokojima,
• Shinichiro Nakamura and
• Kingo Uchida

Beilstein J. Org. Chem. 2019, 15, 2204–2212, doi:10.3762/bjoc.15.217

• subsequent TDDFT calculations. For the calculation of the fluorescence, the geometry optimizations were performed for the first excited state obtained by TDDFT. The hybrid B3LYP functional [33][34][35] was adopted to exchange-correlation term of DFT. The gaussian 6-31G(d,p) basis set was adopted to all

Azologization and repurposing of a hetero-stilbene-based kinase inhibitor: towards the design of photoswitchable sirtuin inhibitors

• Christoph W. Grathwol,
• Nathalie Wössner,
• Sören Swyter,
• Adam C. Smith,
• Enrico Tapavicza,
• Robert K. Hofstetter,
• Anja Bodtke,
• Manfred Jung and
• Andreas Link

Beilstein J. Org. Chem. 2019, 15, 2170–2183, doi:10.3762/bjoc.15.214

• SV(P) basis set [68][69]. The 10 lowest excitation energies and their oscillator strengths were computed using the SV(P) basis and the larger def2-TZVP basis set [69]. This was done using TDDFT with the hybrid approximation to the XC functional PBE0, CC2, and ADC(2) [51][52][53][70][71][72]. ADC(2

Fluorinated azobenzenes as supramolecular halogen-bonding building blocks

• Esther Nieland,
• Oliver Weingart and
• Bernd M. Schmidt

Beilstein J. Org. Chem. 2019, 15, 2013–2019, doi:10.3762/bjoc.15.197

• help of quantum mechanical calculations involving a combination of low-cost implicit solvation models and hybrid density functionals when including dispersion corrections. Electrostatic potential map at different isodensity values (B3LYP/ def2/TZVP/DGZVP optimized geometries) with a) ρ = 0.0001, and b

Tautomerism as primary signaling mechanism in metal sensing: the case of amide group

• Vera Deneva,
• Georgi Dobrikov,
• Aurelien Crochet,
• Daniela Nedeltcheva,
• Katharina M. Fromm and
• Liudmil Antonov

Beilstein J. Org. Chem. 2019, 15, 1898–1906, doi:10.3762/bjoc.15.185

• still not appear even after 1024 scans. Theoretical calculations Quantum-chemical calculations were performed using the Gaussian 09 D.01 program suite [17]. The M06-2X functional [18][19] was used with the 6-31++G** basis set for the calculations. This fitted hybrid meta-GGA functional with 54% HF

Identification of optimal fluorescent probes for G-quadruplex nucleic acids through systematic exploration of mono- and distyryl dye libraries

• Xiao Xie,
• Michela Zuffo,
• Marie-Paule Teulade-Fichou and
• Anton Granzhan

Beilstein J. Org. Chem. 2019, 15, 1872–1889, doi:10.3762/bjoc.15.183

• and RNA structures The fluorimetric response of the dye library was investigated against a set of 14 diverse nucleic acid structures (Table 2), including ten G4-DNA structures of different topologies (parallel G4: c-kit2, 25CEB, c-kit87up, c-myc, c-src1; parallel dimer G4: c-myb; hybrid G4: 22AG, 46AG

• towards hybrid (22AG, 46AG) and antiparallel (HRAS) G4-DNA, whereas the second group (dyes 1s, 1u, 1v, 17a and 18a) shows fluorimetric selectivity for parallel G4-DNA forms (c-kit2, c-kit87up, c-myc). To verify the preferences of the dyes with respect to the conformation of the G4 analytes, we analysed

• this plot, PC1 (x axis) correlates with the overall light-up intensity observed for each dye with the tested targets. On the contrary, PC2 (y axis) correlates with the intra-G4 selectivity of each compound, with compounds selective for hybrid and antiparallel G4s locating in the lower part of the plot

Halide metathesis in overdrive: mechanochemical synthesis of a heterometallic group 1 allyl complex

• Ross F. Koby,
• Nicholas R. Rightmire,
• Nathan D. Schley,
• Timothy P. Hanusa and
• William W. Brennessel

Beilstein J. Org. Chem. 2019, 15, 1856–1863, doi:10.3762/bjoc.15.181

• this and several related points more quantitatively, various features of the K/Cs/[allyl]− system were modeled with DFT calculations, using the B3PW91 hybrid functional [27][28] with Grimme’s -D3 dispersion corrections (GD3BJ) [29]. A calculation on the simple model systems [K(C3H5)] and [Cs(C3H5

Functional panchromatic BODIPY dyes with near-infrared absorption: design, synthesis, characterization and use in dye-sensitized solar cells

• Quentin Huaulmé,
• Cyril Aumaitre,
• Outi Vilhelmiina Kontkanen,
• David Beljonne,
• Alexandra Sutter,
• Gilles Ulrich,
• Renaud Demadrille and
• Nicolas Leclerc

Beilstein J. Org. Chem. 2019, 15, 1758–1768, doi:10.3762/bjoc.15.169

• organic counterpart, i.e., bulk heterojunction solar cells, or other hybrid PV technologies such as perovskite solar cells. DSSCs can display satisfactory power conversion efficiencies (PCE) in the range of 10 to 14% [1][2][3] but also a long-term stability when specific electrolytes based on ionic

Recent advances on the transition-metal-catalyzed synthesis of imidazopyridines: an updated coverage

• Gagandeep Kour Reen,
• Ashok Kumar and
• Pratibha Sharma

Beilstein J. Org. Chem. 2019, 15, 1612–1704, doi:10.3762/bjoc.15.165

Reversible end-to-end assembly of selectively functionalized gold nanorods by light-responsive arylazopyrazole–cyclodextrin interaction

• Maximilian Niehues,
• Patricia Tegeder and
• Bart Jan Ravoo

Beilstein J. Org. Chem. 2019, 15, 1407–1415, doi:10.3762/bjoc.15.140

• –organic hybrid nanomaterials. Keywords: cyclodextrins; gold nanorods; host–guest chemistry; light-responsive materials; molecular switches; self-assembly; Introduction Metallic nanomaterials have received intense and interdisciplinary interest due to their unique optical [1], electronic [2][3] and

• linker molecule (dAAP) led to light-responsive reversible self-assembly of AuNR in an end-to-end manner as depicted in Scheme 1 to open up a novel strategy for the design of hybrid nanomaterials by supramolecular chemistry. Results and Discussion The AuNR (length: 58 nm, width: 25 nm, aspect-ratio: 2.3

• successful method for the fabrication of new hybrid nanomaterials by the application of light-responsive host–guest chemistry allowing for effective control over assembled and disassembled states of anisotropic nanoparticles over several cycles. Experimental Instrumentation and materials All chemicals were

Bambusuril analogs based on alternating glycoluril and xylylene units

• Tomáš Lízal and
• Vladimír Šindelář

Beilstein J. Org. Chem. 2019, 15, 1268–1274, doi:10.3762/bjoc.15.124

• which can interact with cationic, anionic or neutral guest molecules. Here we present the design and synthesis of a new hybrid macrocycle containing glycoluril and aromatic units. The reaction afforded a mixture of macrocyclic homologues from which a two-membered macrocycle was isolated as the main