1,2,3-Triazolium macrocycles in supramolecular chemistry

• Mastaneh Safarnejad Shad,
• Pulikkal Veettil Santhini and
• Wim Dehaen

Beilstein J. Org. Chem. 2019, 15, 2142–2155, doi:10.3762/bjoc.15.211

• macrocycles and focus on their application in different areas of supramolecular chemistry. The synthesis is mostly relying on the well-known “click reaction” (CuAAC) leading to 1,4-disubstituted 1,2,3-triazoles that then can be quaternized. Applications of triazolium macrocycles thus prepared include

• receptors for molecular recognition of anionic species, pH sensors, mechanically interlocked molecules, molecular machines, and molecular reactors. Keywords: anion recognition; catenane; chalcogen bonding; click reaction; molecular reactor; hydrogen bonding; pH sensor; rotaxane; supramolecular; 1,2,3

• -triazolium macrocycles; Review 1. Introduction Supramolecular chemistry – “The chemistry beyond the molecule” [1] – is an ever growing interdisciplinary area has emerged from the early host–guest chemistry to more elaborate bio-inspired supramolecular aggregates by exploiting various noncovalent

Multiple threading of a triple-calix[6]arene host

• Veronica Iuliano,
• Roberta Ciao,
• Emanuele Vignola,
• Carmen Talotta,
• Patrizia Iannece,
• Margherita De Rosa,
• Annunziata Soriente,
• Carmine Gaeta and
• Placido Neri

Beilstein J. Org. Chem. 2019, 15, 2092–2104, doi:10.3762/bjoc.15.207

• Veronica Iuliano Roberta Ciao Emanuele Vignola Carmen Talotta Patrizia Iannece Margherita De Rosa Annunziata Soriente Carmine Gaeta Placido Neri Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia " A. Zambelli", Università di Salerno, Via Giovanni Paolo II 132, 84084

• stereoselective formation of endo-alkyl pseudo[n]rotaxane stereoisomers. Keywords: calixarene; multiple-threading; pseudo[n]rotaxane; stereoisomers; Introduction The self-assembly [1] of smaller components to larger aggregates represents one of the most spectacular phenomena in supramolecular chemistry [2][3][4

• ]. Among the self-assembly processes, those that lead to the formation of interlocked and/or interpenetrated supramolecular structures have inspired many scientists [5][6][7][8]. The synthesis of interlocked molecules such as rotaxanes, catenanes, and high-order architectures (e.g., polyrotaxanes, suitanes

1,2,3,4-Tetrahydro-1,4,5,8-tetraazaanthracene revisited: properties and structural evidence of aromaticity loss

• Arnault Heynderickx,
• Sébastien Nénon,
• Olivier Siri,
• Vladimir Lokshin and
• Vladimir Khodorkovsky

Beilstein J. Org. Chem. 2019, 15, 2059–2068, doi:10.3762/bjoc.15.203

• moieties allows further modifications at these units to achieve fine-tuning of the light absorption and redox properties. In the course of this study, we also expected that these derivatives could serve as interesting components of supramolecular structures that can assemble in a predictable way owing to

• hydroquinones or chloranilic acid as the H-bond donors (the O–H···N=C H-bonds) are known [15][16], the examples of the N–H···N=C bonds are less numerous and involve mostly aminopyrimidines and imidazoles [13][14]. Derivatives of 3 can be of special interest as flexible supramolecular synthons [14][17] owing to

• , 6a forms a 2D supramolecular network involving the chloride anion Cl1 as an intermolecular connector between the molecules. Each anion interacts with the two N–H protons of the associated dications (Figure 10). In spite of the asymmetrical structure, the X-ray structure of 7a exhibits the same trend

Fluorinated azobenzenes as supramolecular halogen-bonding building blocks

• Esther Nieland,
• Oliver Weingart and
• Bernd M. Schmidt

Beilstein J. Org. Chem. 2019, 15, 2013–2019, doi:10.3762/bjoc.15.197

• , Universitätsstraße 1, D-40225 Düsseldorf, Germany 10.3762/bjoc.15.197 Abstract ortho-Fluoroazobenzenes are a remarkable example of bistable photoswitches, addressable by visible light. Symmetrical, highly fluorinated azobenzenes bearing an iodine substituent in para-position were shown to be suitable supramolecular

• bond donor, R is covalently bound to X, and Y is the Lewis basic halogen bond acceptor [1]. In recent years, halogen bonding was used to assemble molecules, leading to a variety of supramolecular architectures [8][9][10][11][12][13][14][15][16][17][18][19], as well as discrete supermolecules [20][21

• in the field of crystal engineering [1]. Only few supramolecular capsules were reported so far [29], including the resorcin[4]arene capsules of Diederich and co-workers [21][23], triangular macrocycles assembled by self-complemented halogen bonding [20] and halogen bond templated, polyfluorinated

Synthesis and anion binding properties of phthalimide-containing corona[6]arenes

• Meng-Di Gu,
• Yao Lu and
• Mei-Xiang Wang

Beilstein J. Org. Chem. 2019, 15, 1976–1983, doi:10.3762/bjoc.15.193

• [1][2][11][12]. Moreover, the designed macrocycles are useful molecular tools in the investigation of supramolecular catalysis and reaction mechanisms [1][2][13][14][15][16]. Heteracalixaromatics or heteroatom-bridged calix(het)arenes [17][18][19][20][21] are synthetic macrocycles composed of

• heteroatoms and meta-(het)arenes in an alternative manner. Because of the interplay between heteroatoms and aromatic rings, heteracalixaromatics possess versatile molecular recognition properties and have found wide supramolecular applications. Very recently, we have devised coronarenes [22] simply through

• ]tetrazines a useful macrocyclic platform for the study of supramolecular chemistry. Applications of the phthalimide-containing functionalized O6-corona[3]arene[3]tetrazines are being actively perused and results will be reported in due course. Experimental General procedure for the synthesis of 3a–e. To a

Morphology-tunable and pH-responsive supramolecular self-assemblies based on AB₂-type host–guest-conjugated amphiphilic molecules for controlled drug delivery

• Yang Bai,
• Cai-ping Liu,
• Di Chen,
• Long-hai Zhuo,
• Huai-tian Bu and
• Wei Tian

Beilstein J. Org. Chem. 2019, 15, 1925–1932, doi:10.3762/bjoc.15.188

• -responsive supramolecular self-assemblies have been constructed, the controlled drug delivery induced by morphology transitions of these supramolecular self-assemblies on the basis of host–guest-conjugated monomers (HGCMs) are few reported. In this paper, the self-assembly behaviors of AB2-type HGCMs, e.g

• ., β-cyclodextrin-benzimidazole2 (β-CD-BM2), were investigated at neutral and acidic pH conditions, respectively. Specifically, β-CD-BM2 first self-assembled into fan-shaped supramolecular self-assemblies with a hydrodynamic diameter of 163 nm at neutral pH, whereas they were further dissociated into

• spherical supramolecular self-assemblies with a size of 52 nm under acidic conditions. This morphology transition process was utilized to conduct a two-stage DOX delivery under neutral and acidic pH. Basic cell experiments demonstrated that the drug-loaded β-CD-BM2-based supramolecular self-assemblies with

Complexation of chiral amines by resorcin[4]arene sulfonic acids in polar media – circular dichroism and diffusion studies of chirality transfer and solvent dependence

• Bartosz Setner and
• Agnieszka Szumna

Beilstein J. Org. Chem. 2019, 15, 1913–1924, doi:10.3762/bjoc.15.187

• Bartosz Setner Agnieszka Szumna Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland 10.3762/bjoc.15.187 Abstract Directional self‐assembly of conformationally well-defined complexes in polar environment is still a major challenge in supramolecular

• disintegrative for these complexes. This result is quite non-intuitive and worth attention in the context of formation of supramolecular complexes in polar environment, for which DMSO is most often a first-choice solvent. Keywords: cavitands; chirality; macrocycle; resorcin[4]arene; self-assembly

• ; supramolecular chemistry; Introduction Despite of the great progress that has been made in supramolecular chemistry in polar and aqueous media, formation of discrete ordered supramolecular associates with precise patterns of noncovalent interactions still presents a challenge [1][2]. Especially self-assembly

Nanopatterns of arylene–alkynylene squares on graphite: self-sorting and intercalation

• Tristan J. Keller,
• Joshua Bahr,
• Kristin Gratzfeld,
• Nina Schönfelder,
• Marcin A. Majewski,
• Marcin Stępień,
• Sigurd Höger and
• Stefan-S. Jester

Beilstein J. Org. Chem. 2019, 15, 1848–1855, doi:10.3762/bjoc.15.180

• , Uniwersytet Wrocławski, ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland 10.3762/bjoc.15.180 Abstract Supramolecular nanopatterns of arylene–alkynylene squares with side chains of different lengths are investigated by scanning tunneling microscopy at the solid/liquid interface of highly oriented pyrolytic

• other words, either alkyl/alkoxy chains of the same or different length(s) will interdigitate, which corresponds to narcisstic self-sorting or social self-sorting, respectively [26]. Results and Discussion Here, we report on the synthesis and supramolecular nanopatterns of shape-persistent arylene

• compounds 1a/b (see Supporting Information File 1). Details, including the full compound characterization (NMR and MS), are given in Supporting Information File 1. Supramolecular nanopatterns of 1a/b at the solid/liquid interface of HOPG and 1,2,4-trichlorobenzene (TCB) were investigated by scanning

Novel macrocycles – and old ones doing new tricks

• Wei Jiang and
• Christoph A. Schalley

Beilstein J. Org. Chem. 2019, 15, 1838–1839, doi:10.3762/bjoc.15.178

• 10.3762/bjoc.15.178 Keywords: macrocycles; supramolecular chemistry; Macrocycles [1] are the workhorses in supramolecular chemistry. Many basic supramolecular concepts have been developed through studying crown ethers, cryptands, podands and spherands in the 1970s and 1980s. For these contributions

• , macrocycles played a central role for the fundamental science that established supramolecular chemistry as an independent field of chemical research as well as for its applications in contemporary research on functional supramolecules and materials. Nowadays, the use of macrocycles has significantly

• diversified. They are not only tools for studying molecular recognition and molecular machines, but are also key components for sensing, supramolecular catalysis, (chiral) separation, drug delivery, or smart materials. Many new macrocycles have recently been reported, with pillararenes being one of the most

Design, synthesis and biological evaluation of immunostimulating mannosylated desmuramyl peptides

• Rosana Ribić,
• Ranko Stojković,
• Lidija Milković,
• Mariastefania Antica,
• Marko Cigler and
• Srđanka Tomić

Beilstein J. Org. Chem. 2019, 15, 1805–1814, doi:10.3762/bjoc.15.174

• , a powerful supramolecular nanoparticle carrier for targeted drug delivery [38]. Previous research suggested a design of mannosylated desmuramyl peptides with adamantane at the C-terminus in order to facilitate the incorporation into the hydrophobic layer of the cavity because of the minor steric

Complexation of 2,6-helic[6]arene and its derivatives with 1,1′-dimethyl-4,4′-bipyridinium salts and protonated 4,4'-bipyridinium salts: an acid–base controllable complexation

• Jing Li,
• Qiang Shi,
• Ying Han and
• Chuan-Feng Chen

Beilstein J. Org. Chem. 2019, 15, 1795–1804, doi:10.3762/bjoc.15.173

• macrocyclic arenes with diverse functional groups are also important for the development of various new host–guest supramolecular systems [23][24][25][26][27][28][29]. Helic[6]arenes [30], a new kind of macrocyclic arenes, are composed of 2,6-dihydroxy-substituted triptycene subunits bridged by methylene

• groups. They have exhibited wide potential applications in supramolecular chemistry [31][32][33][34][35][36] for their unique structures and electron-rich cavities. In this paper, we report the complexation between 2,6-helic[6]arene and its four derivatives with 1,1′-dimethyl-4,4′-bipyridinium and

Host–guest interactions in nor-seco-cucurbit[10]uril: novel guest-dependent molecular recognition and stereoisomerism

• Xiaodong Zhang,
• Wei Wu,
• Zhu Tao and
• Xin-Long Ni

Beilstein J. Org. Chem. 2019, 15, 1705–1711, doi:10.3762/bjoc.15.166

• Xiaodong Zhang Wei Wu Zhu Tao Xin-Long Ni Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province, Guizhou University, Guiyang 550025, China 10.3762/bjoc.15.166 Abstract The unique monomer and excimer fluorescence emissions of pyrene were first exploited as distinctly

• guests in its cavity through host-stabilized charge-transfer or π–π interactions [14][15]. This novel property of Q[8] has been utilized as molecular container for biological substrates [16][17], as well as in the construction of various supramolecular assemblies with specific structures and properties

• adamantaneammonium (ADA) or alkylammonium ions into the cavity, forming a ternary complex. The novel binding capacity of NS-CB[10] has been utilized to form supramolecular polymers [24][25][26] and polymer nanoparticles [27]. More importantly, Isaacs et al. discovered that when the unsymmetrical guest ADA molecules

Synthesis, enantioseparation and photophysical properties of planar-chiral pillar[5]arene derivatives bearing fluorophore fragments

• Guojuan Li,
• Chunying Fan,
• Guo Cheng,
• Wanhua Wu and
• Cheng Yang

Beilstein J. Org. Chem. 2019, 15, 1601–1611, doi:10.3762/bjoc.15.164

• : aggregation; circular dichroism; chirality; click chemistry; macrocycles; pillar[5]arenes; Introduction Planar-chiral compounds are structurally appealing and potentially applicable in various functional materials such as chiral discriminators [1][2], chiral polymers, supramolecular sensors [3] and chiral

• center and therefore chirality transfer is non-effective [43]. Supramolecular assembly usually leads to different photophysical properties than homogeneous solutions. We have demonstrated that solvents play a critical role in chiral recognition and chiral photoreactions [44][45][46][47][48][49][50][51

• adding water into the THF solution. This work presented a new strategy for achieving versatile planar chiral hosts, and these hosts will have potential applications in various fields such as supramolecular sensing, host–guest recognition and triplet–triplet annihilation upconversion. Experimental General

Water inside β-cyclodextrin cavity: amount, stability and mechanism of binding

• Stiliyana Pereva,
• Valya Nikolova,
• Silvia Angelova,
• Tony Spassov and
• Todor Dudev

Beilstein J. Org. Chem. 2019, 15, 1592–1600, doi:10.3762/bjoc.15.163

• supramolecular host–guest structures. The water content of CDs has been a subject of numerous investigations. The data (both experimental and theoretical) are scattered and, still, no consensus has been reached on the number and position of water molecules, and the energetics of the hydration/dehydration of

An azobenzene container showing a definite folding – synthesis and structural investigation

• Abdulselam Adam,
• Saber Mehrparvar and
• Gebhard Haberhauer

Beilstein J. Org. Chem. 2019, 15, 1534–1544, doi:10.3762/bjoc.15.156

• Abdulselam Adam Saber Mehrparvar Gebhard Haberhauer Institut für Organische Chemie, Universität Duisburg-Essen, Universitätsstr. 7, D-45117 Essen, Germany 10.3762/bjoc.15.156 Abstract The combination of photo-switchable units with macrocycles is a very interesting field in supramolecular

• the high dispersion energy in the compact cis,cis-isomer. Keywords: azobenzene; macrocycles; molecular switch; Introduction In supramolecular chemistry rigid scaffolds are required to arrange different recognition units in predefined distances and spatial orientation to each other [1]. One example

• organoammonium ions [10], and biomolecules [11][12][13][14][15][16][17]. Furthermore, modified Lissoclinum cyclopeptides were used for the construction of novel tubular and cage structures [18][19], as prototypes for mimicking multiple loops of proteins [20] and for homochiral supramolecular polymerization [21

Mechanochemistry II

• José G. Hernández

Beilstein J. Org. Chem. 2019, 15, 1521–1522, doi:10.3762/bjoc.15.154

• find contributions from renowned global experts in the field of mechanochemistry spanning areas from organic mechanochemistry, supramolecular mechanochemistry to polymer mechanochemistry. Moreover, findings reported in this current thematic issue also contribute to the expansion of synthetic chemistry

A heteroditopic macrocycle as organocatalytic nanoreactor for pyrroloacridinone synthesis in water

• Piyali Sarkar,
• Sayan Sarkar and
• Pradyut Ghosh

Beilstein J. Org. Chem. 2019, 15, 1505–1514, doi:10.3762/bjoc.15.152

• supramolecular assemblies like molecular rotors (pseudorotaxane, rotaxane, catenane), molecular switches, molecular shuttles, etc. [32][33][34][35][36][37][38][39][40][41][42][43]. Furthermore, macrocycles have been applied in the area of ion–ion pair recognition and heterometallic complex formation [44][45][46

2,3-Dibutoxynaphthalene-based tetralactam macrocycles for recognizing precious metal chloride complexes

• Li-Li Wang,
• Yi-Kuan Tu,
• Huan Yao and
• Wei Jiang

Beilstein J. Org. Chem. 2019, 15, 1460–1467, doi:10.3762/bjoc.15.146

• –guest chemistry; macrocycles; molecular recognition; precious metal chloride complexes; Introduction Macrocyclic receptors are the major workhorses in supramolecular chemistry. Design and synthesis of new macrocyclic receptors with new properties is always attractive but is also challenging [1

Introduction of an isoxazoline unit to the β-position of porphyrin via regioselective 1,3-dipolar cycloaddition reaction

• Xiujun Liu,
• Xiang Ma and
• Yaqing Feng

Beilstein J. Org. Chem. 2019, 15, 1434–1440, doi:10.3762/bjoc.15.143

• enantiomers of 3a is present, which assembled to a dimeric structure with the fifth chelation of a Zn2+ ion by the carbonyl group of the other molecule. The self-dimerization property of 3a may be utilized in supramolecular chemistry [50][51][52][53]. Experimental 1: Porphyrin phosphonium salt 1 was prepared

Reversible end-to-end assembly of selectively functionalized gold nanorods by light-responsive arylazopyrazole–cyclodextrin interaction

• Maximilian Niehues,
• Patricia Tegeder and
• Bart Jan Ravoo

Beilstein J. Org. Chem. 2019, 15, 1407–1415, doi:10.3762/bjoc.15.140

• aggregates can be realized more or less efficiently through various approaches based on supramolecular interactions like metal–metal and π–π interactions [11], DNA mediated [12] or by host–guest chemistry [13]. Most of these approaches require selective functionalization of the ends of the AuNR and take

• the complete surface because of its cell toxicity [17], hence strategies for replacing this coating are desirable. Host–guest chemistry is a supramolecular interaction that is tailor-made for self-assembly due to its lock–key mechanism and has been applied in our and other groups to various

• azobenzenes leading due to the superior photophysical properties to fully reversible supramolecular systems, which showed limited feasibility with azobenzenes [20][38][39]. Herein, we present the application of a light-responsive CD–AAP host–guest system for the reversible end-to-end assembly of AuNR. The

Complexation of a guanidinium-modified calixarene with diverse dyes and investigation of the corresponding photophysical response

• Yu-Ying Wang,
• Yong Kong,
• Zhe Zheng,
• Wen-Chao Geng,
• Zi-Yi Zhao,
• Hongwei Sun and
• Dong-Sheng Guo

Beilstein J. Org. Chem. 2019, 15, 1394–1406, doi:10.3762/bjoc.15.139

• -consuming syntheses. Alternatively, supramolecular chemistry provides a non-covalent approach to achieve fluorescence sensing [2]. An elegant supramolecular strategy, named indicator displacement assay (IDA), was established and popularized by Anslyn and co-workers (Scheme 1a) [3][4]. The complexation of a

• observable signal. Subsequent to IDA, Nau and co-workers conceptualized a novel approach towards enzyme assays, termed supramolecular tandem assay (STA) (Scheme 1b) [5]. STA is envisaged as a time-resolved version of IDA and the key idea is that the competitor is not added, but rather created during the

• fluorophores through supramolecular encapsulation using artificial macrocyclic hosts has always been an active research area [10][11][12]. The complexes of macrocycles with luminescent dyes not only act as reporter pairs for sensing [13][14][15], but also offer various applications in bioimaging [16][17

Selective detection of DABCO using a supramolecular interconversion as fluorescence reporter

• Indrajit Paul,
• Debabrata Samanta,
• Sudhakar Gaikwad and
• Michael Schmittel

Beilstein J. Org. Chem. 2019, 15, 1371–1378, doi:10.3762/bjoc.15.137

• -component rectangle [Cu4(1)2(2)2]4+ and the four-component sandwich complex [Cu2(1)(2)(4)]2+ is triggered by inclusion and release of DABCO (4). The fully reversible and clean switching between two multicomponent supramolecular architectures can be monitored by fluorescence changes at the zinc porphyrin

• sites. The structural changes are accompanied by a huge spatial contraction/expansion of the zinc porphyrin–zinc porphyrin distances that change from 31.2/38.8 Å to 6.6 Å and back. The supramolecular interconversion was used for the highly selective detection of DABCO in a mixture of other similar

• compounds. Keywords: copper; detection; fluorescence; interconversion; macrocycles; self-assembly; self-sorting; zinc porphyrin; Introduction Since dynamic multicomponent supramolecular structures are nowadays abundant [1][2], the weak intercomponent binding [3][4][5][6][7][8][9] is often instrumentalized

Efficient resolution of racemic crown-shaped cyclotriveratrylene derivatives and isolation and characterization of the intermediate saddle isomer

• Sven Götz,
• Andreas Schneider and
• Arne Lützen

Beilstein J. Org. Chem. 2019, 15, 1339–1346, doi:10.3762/bjoc.15.133

• ; cyclotriveratrylenes; HPLC; macrocycles; racemization; saddle isomer; Introduction Cyclotriveratrylenes (CTVs) [1][2][3][4][5][6][7][8] are cyclic bowl-shaped molecules and belong to the most studied concave host molecules in supramolecular chemistry besides, e.g., calixarenes and resorcinarenes [9], cyclodextrins

• ][28]. Due to our interest in dissymmetric [29][30][31][32][33][34][35][36] and concave molecular building blocks [37] and their implementation in supramolecular architectures like (allosteric) receptors [38][39][40][41][42][43][44] or metallosupramolecular helicates and cages [45][46][47][48][49][50

Host–guest interactions between p-sulfonatocalix[4]arene and p-sulfonatothiacalix[4]arene and group IA, IIA and f-block metal cations: a DFT/SMD study

• Valya K. Nikolova,
• Cristina V. Kirkova,
• Silvia E. Angelova and
• Todor M. Dudev

Beilstein J. Org. Chem. 2019, 15, 1321–1330, doi:10.3762/bjoc.15.131

• cations (La3+) a supramolecular approach with explicit solvent treatment has been applied in the study of the effect of metal hydration on the complexation process. The La3+ binding to the p-sulfonatocalix[4]arene host molecule (now in the metal’s second coordination shell) is still exergonic as evidenced

• formation reactions. Keywords: complex formation; DFT; group IA; IIA and f-block metal cations; macrocycles; p-sulfonatocalix[4]arene; p-sulfonatothiacalix[4]arene; Introduction If macrocycles are pillars of the supramolecular chemistry, then calixarenes (“calix” = vase + “arene”) are the 3rd pillar after

• metal hydration (i.e., explicit solvent treatment method) on the complexation process was studied here by employing a supramolecular approach for one representative of the metal species from the series, La3+ cation. A hydration number of 9 and initial tricapped trigonal prismatic arrangement of the

Bambusuril analogs based on alternating glycoluril and xylylene units

• Tomáš Lízal and
• Vladimír Šindelář

Beilstein J. Org. Chem. 2019, 15, 1268–1274, doi:10.3762/bjoc.15.124

• Tomas Lizal Vladimir Sindelar Department of Chemistry and RECETOX, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic 10.3762/bjoc.15.124 Abstract The glycoluril monomer is a popular building block in supramolecular chemistry as it is used for the synthesis of versatile host molecules

• ; supramolecular chemistry; Introduction Macrocycles consisting of urea building blocks play an important role in supramolecular chemistry [1]. Urea N–H motifs provide macrocycles with the ability to act as anion receptors due to the stabilizing effect of N–H···anion hydrogen bonding [2][3][4]. Furthermore, the