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Search for "fragmentation" in Full Text gives 247 result(s) in Beilstein Journal of Organic Chemistry. Showing first 200.

Genicunolide A, B and C: three new triterpenoids from Euphorbia geniculata

  • Alia Farozi,
  • Javid A. Banday and
  • Shakeel A. Shah

Beilstein J. Org. Chem. 2015, 11, 2707–2712, doi:10.3762/bjoc.11.291

Graphical Abstract
  • hydroxy group [δC 71.8] in 3. The mass spectrum of compound 3 revealed that the double bond triggered the typical RDA fragmentation of ring B [39] to give densely populated ion peaks at m/z 166 (ring A) and 292 (rings C/D/E) placing the double bond at C-5 [δC 122.0 (C-6), 139.9 (C-5)] [38] and two hydroxy
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Published 23 Dec 2015

Synthesis of Xenia diterpenoids and related metabolites isolated from marine organisms

  • Tatjana Huber,
  • Lara Weisheit and
  • Thomas Magauer

Beilstein J. Org. Chem. 2015, 11, 2521–2539, doi:10.3762/bjoc.11.273

Graphical Abstract
  • -selectivity of the olefin depends on the ring-size and the choice of catalyst. As a consequence of avoiding ring strain, small- and medium-sized rings are generally obtained with Z-configuration of the alkene. The Grob fragmentation reaction of fused 6,5-bicycles B is usually a concerted process that affords
  • cyclononenes in a stereospecific manner [27]. The relative configuration of the leaving group (LG = OTs, OMs, Hal, NR3+) and the adjacent substituent determine the E/Z-geometry of the olefin. A cis-geometry leads to the formation of the E-configured double bond. In general, the Grob fragmentation is the most
  • ] of 43 afforded a 4,6,5-tricycle which was converted to the fragmentation precursor 45 in four further steps. A base-mediated Wharton-type Grob fragmentation [33] then served as the key step to construct the cyclononene motif of bicycle 47. Prolonged exposure of the resulting cis-fused 4,9-bicycle 47
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Published 10 Dec 2015

Recent highlights in biosynthesis research using stable isotopes

  • Jan Rinkel and
  • Jeroen S. Dickschat

Beilstein J. Org. Chem. 2015, 11, 2493–2508, doi:10.3762/bjoc.11.271

Graphical Abstract
  • EIMS-fragmentation reactions of 34 by comparison of the 13C-including fragments. Singly labeled FPP isotopomers also proved valuable to investigate reprotonation steps in sesquiterpene cyclization mechanisms by incubation in deuterium oxide. The biosynthesis of the recently discovered corvol ethers A
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Published 09 Dec 2015

Bromotyrosine-derived alkaloids from the Caribbean sponge Aplysina lacunosa

  • Qun Göthel,
  • Thanchanok Sirirak and
  • Matthias Köck

Beilstein J. Org. Chem. 2015, 11, 2334–2342, doi:10.3762/bjoc.11.254

Graphical Abstract
  • proposed to be the same as of 19, chemical fragmentation of 5 releasing from the sponge Aplysina spp. after induction by tissue damage (Figure 4). However, the conversion from 5 to 19 has not been confirmed. A single data set in the 13C NMR spectrum supported the presence of one diastereomer of 1. Compound
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Published 26 Nov 2015

Copper-catalyzed aerobic radical C–C bond cleavage of N–H ketimines

  • Ya Lin Tnay,
  • Gim Yean Ang and
  • Shunsuke Chiba

Beilstein J. Org. Chem. 2015, 11, 1933–1943, doi:10.3762/bjoc.11.209

Graphical Abstract
  • cleavage of N–H ketimines. Treatment of N–H ketimines having an α-sp3 hybridized carbon under Cu-catalyzed aerobic reaction conditions resulted in a radical fragmentation with C–C bond cleavage to give the corresponding carbonitrile and carbon radical intermediate. This radical process has been applied for
  • 1aa most likely via the corresponding iminyl radical, that undergoes radical fragmentation to afford the corresponding C-radical and carbonitrile 5a [55]. Thus, it is deduced that oxaspirocyclohexadienone 3a was formed through oxygenation of the putative C-radical. Moreover, in this transformation
  • , that undergoes β-carbon fragmentation to give p-tolunitrile (5a) and biaryl-2-isopropyl radical B (Scheme 5a). The aerobic oxygenation of C-radical B affords peroxy radical C, that is presumably reduced by Cu(I) species through the Fenton-type mechanism [57] to give alkoxy radical D [58]. Subsequent
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Published 19 Oct 2015

Pyridinoacridine alkaloids of marine origin: NMR and MS spectral data, synthesis, biosynthesis and biological activity

  • Louis P. Sandjo,
  • Victor Kuete and
  • Maique W. Biavatti

Beilstein J. Org. Chem. 2015, 11, 1667–1699, doi:10.3762/bjoc.11.183

Graphical Abstract
  • composition leading to the deduction of the structure. Mass fragmentation The mass spectrometry spectrum of pyridoacridines contains very little information due to the lack of fragments. Independent of the ionization source used to determine the elemental composition (ESI, DIC, APCI, FAB, or EI), molecules
  • with compact, and fused rings do not undergo fragmentation and only their corresponding ion peak is observed [47]. However, those containing a side chain show a few ion peaks corresponding to the sequential fragmentation of the latter. This observation is supported by the mass spectrometry data of
  • styelsamine B (6) and sagitol (26), whose fragments could be used to determine the pyridoacridine skeleton (Figures 1–4) [42][45][55]. The electron-impact mass spectrometry of subarine (37) showed good fragmentation because of the partial flexibility of the structure (Figure 5) [40]. Recent synthesis of
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Published 18 Sep 2015

Fates of imine intermediates in radical cyclizations of N-sulfonylindoles and ene-sulfonamides

  • Hanmo Zhang,
  • E. Ben Hay,
  • Stephen J. Geib and
  • Dennis P. Curran

Beilstein J. Org. Chem. 2015, 11, 1649–1655, doi:10.3762/bjoc.11.181

Graphical Abstract
  • /fragmentation. Tin hydride-mediated cyclizations of 2-halo-N-(3-methyl-N-sulfonylindole)anilines provide spiro[indoline-3,3'-indolones] or spiro-3,3'-biindolines (derived from imine reduction), depending on the indole C2 substituent. Cyclizations of 2-haloanilide derivatives of 3-carboxy-N-sulfonyl-2,3
  • ; radical cyclization; radical fragmentation; spiro-indoles; Introduction Radical additions and cyclizations of ene-sulfonamides are useful reactions in a number of settings. The primary products of these reactions, α-sulfonamidoyl radicals, are often thought to undergo elimination reactions of sulfonyl
  • undergoes rapid hydration to hemiaminal 29 followed by fragmentation and enol/lactam tautomerization to give formamide 25. We show here direct fragmentation of 29, in what is essentially the lactam/formamide version of a retro-Claisen (or retro-Dieckmann reaction). However, it is also possible that
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Published 17 Sep 2015

Preparative semiconductor photoredox catalysis: An emerging theme in organic synthesis

  • David W. Manley and
  • John C. Walton

Beilstein J. Org. Chem. 2015, 11, 1570–1582, doi:10.3762/bjoc.11.173

Graphical Abstract
  • semiconductor and releasing neutral radicals. Albini and coworkers reported on the use of benzyltrimethylsilanes 43 [66]. Hole oxidation with photoexcited dispersions of TiO2 gave rise to radical cations that underwent fragmentation with release of benzyl type radicals. The latter reductively benzylated
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Published 09 Sep 2015

Structure and conformational analysis of spiroketals from 6-O-methyl-9(E)-hydroxyiminoerythronolide A

  • Ana Čikoš,
  • Irena Ćaleta,
  • Dinko Žiher,
  • Mark B. Vine,
  • Ivaylo J. Elenkov,
  • Marko Dukši,
  • Dubravka Gembarovski,
  • Marina Ilijaš,
  • Snježana Dragojević,
  • Ivica Malnar and
  • Sulejman Alihodžić

Beilstein J. Org. Chem. 2015, 11, 1447–1457, doi:10.3762/bjoc.11.157

Graphical Abstract
  • formation of compounds 2–4. Supporting Information Supporting Information File 236: Observed nOe contacts (Tables SI1–4), proton vicinal coupling constants used for molecular modelling calculations (Table SI5) and accurate mass measurements (Table SI7) for compounds 2–4, as well as HRMS fragmentation for
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Published 19 Aug 2015

A new and efficient procedure for the synthesis of hexahydropyrimidine-fused 1,4-naphthoquinones

  • Marcelo Isidoro P. Reis,
  • Vinícius R. Campos,
  • Jackson A. L. C. Resende,
  • Fernando C. Silva and
  • Vitor F. Ferreira

Beilstein J. Org. Chem. 2015, 11, 1235–1240, doi:10.3762/bjoc.11.137

Graphical Abstract
  • synthetic and biological applications [40]. These substances are easily prepared from commercially available amines and formaldehyde in toluene in yields ranging from 75–90%. Barluenga and coworkers [41] have previously shown that 1,3,5-triazinanes undergo fragmentation at elevated temperatures to form 3
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Published 22 Jul 2015

Reactions of nitroxides 15. Cinnamates bearing a nitroxyl moiety synthesized using a Mizoroki–Heck cross-coupling reaction

  • Jerzy Zakrzewski and
  • Bogumiła Huras

Beilstein J. Org. Chem. 2015, 11, 1155–1162, doi:10.3762/bjoc.11.130

Graphical Abstract
  • /z 124 and 109 (Scheme 2). The peaks at m/z 154, 124 and 109 were thoroughly analyzed for the acrylate 3, as an example. Proposed elemental composition of the fragmentation ions at m/z 154, 124, 109 for the acrylate 3 were confirmed by the measurement of their exact mass: m/z 154 (calculated C9H16NO
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Published 13 Jul 2015

Peptide–polymer ligands for a tandem WW-domain, an adaptive multivalent protein–protein interaction: lessons on the thermodynamic fitness of flexible ligands

  • Katharina Koschek,
  • Vedat Durmaz,
  • Oxana Krylova,
  • Marek Wieczorek,
  • Shilpi Gupta,
  • Martin Richter,
  • Alexander Bujotzek,
  • Christina Fischer,
  • Rainer Haag,
  • Christian Freund,
  • Marcus Weber and
  • Jörg Rademann

Beilstein J. Org. Chem. 2015, 11, 837–847, doi:10.3762/bjoc.11.93

Graphical Abstract
  • building block N-methacryloyl-β-alaninyl-S-benzyl thioester under reversible addition–fragmentation chain-transfer (RAFT) conditions yielding a thioester-containing copolymer with 13.3 kDa and polydispersity of 1.2, which we denominated as NCL-polymer [10]. NCL-polymer was converted into multivalent
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Published 18 May 2015

Discrete multiporphyrin pseudorotaxane assemblies from di- and tetravalent porphyrin building blocks

  • Mirko Lohse,
  • Larissa K. S. von Krbek,
  • Sebastian Radunz,
  • Suresh Moorthy,
  • Christoph A. Schalley and
  • Stefan Hecht

Beilstein J. Org. Chem. 2015, 11, 748–762, doi:10.3762/bjoc.11.85

Graphical Abstract
  • . The formation of unspecific complexes as well as fragmentation upon ionization have been found to be quite limited so that the picture obtained from the mass spectra can be expected to provide realistic insights into the composition of the complexes present in solution. As all stereoisomers have the
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Published 12 May 2015

Highly selective generation of vanillin by anodic degradation of lignin: a combined approach of electrochemistry and product isolation by adsorption

  • Dominik Schmitt,
  • Carolin Regenbrecht,
  • Marius Hartmer,
  • Florian Stecker and
  • Siegfried R. Waldvogel

Beilstein J. Org. Chem. 2015, 11, 473–480, doi:10.3762/bjoc.11.53

Graphical Abstract
  • electrolysis time to 5% of the initially applied with planar electrodes. Another important factor for the efficiency of the selective degradation to 1 is the reaction temperature. At elevated temperatures usually decoiling or fragmentation takes place in the lignin particles [35][36]. This is very important to
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Published 13 Apr 2015
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Published 08 Apr 2015

Cross-dehydrogenative coupling for the intermolecular C–O bond formation

  • Igor B. Krylov,
  • Vera A. Vil’ and
  • Alexander O. Terent’ev

Beilstein J. Org. Chem. 2015, 11, 92–146, doi:10.3762/bjoc.11.13

Graphical Abstract
  • these radicals are often non-selective and are accompanied by the formation of alcohols, carbonyl compounds, and fragmentation products. The examples of the C–O bond formation between two molecules using O-electrophiles are rare; electron-deficient peroxides with a specific structure can act as O
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Published 20 Jan 2015

Come-back of phenanthridine and phenanthridinium derivatives in the 21st century

  • Lidija-Marija Tumir,
  • Marijana Radić Stojković and
  • Ivo Piantanida

Beilstein J. Org. Chem. 2014, 10, 2930–2954, doi:10.3762/bjoc.10.312

Graphical Abstract
  • photoinitiation in the presence of excess t-BuOK. The photoinduced ET to the amide-anion resulted in its radical anion. After fragmentation of the C–I bond, an intramolecular cyclization occurred, and after acidification of the reaction medium, the oxidized phenanthridine compounds were obtained in very good
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Published 10 Dec 2014

Linear-g-hyperbranched and cyclodextrin-based amphiphilic block copolymer as a multifunctional nanocarrier

  • Yamei Zhao,
  • Wei Tian,
  • Guang Yang and
  • Xiaodong Fan

Beilstein J. Org. Chem. 2014, 10, 2696–2703, doi:10.3762/bjoc.10.284

Graphical Abstract
  • achieve controlled drug release. An amphiphilic, triblock polymer (ABC) with hyperbranched polycarbonsilane (HBPCSi) and β-cyclodextrin (β-CD) moieties were first synthesized by the combination of a two-step reversible addition-fragmentation transfer polymerization into a pseudo-one-step hydrosilylation
  • of the β-CD moieties (Scheme 1C, P3). Based on the above considerations, P1 was first synthesized via reversible addition–fragmentation transfer polymerization (RAFT), where HEMA and DMAEMA were used as the first and second monomer, respectively. To obtain P2, HBPCSi was then grafted onto the side
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Published 18 Nov 2014

Photorelease of phosphates: Mild methods for protecting phosphate derivatives

  • Sanjeewa N. Senadheera,
  • Abraham L. Yousef and
  • Richard S. Givens

Beilstein J. Org. Chem. 2014, 10, 2038–2054, doi:10.3762/bjoc.10.212

Graphical Abstract
  • -naphthylacetyl analogs [49] or are consumed by oxidation and fragmentation as in the case of 24. Thus, the conversion and chemical yields were low and the photolysates were complex mixtures of byproducts. In the case of 24, although the reaction efficiency was insensitive to O2 (implying singlet reactivity, not
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Published 29 Aug 2014

A new charge-tagged proline-based organocatalyst for mechanistic studies using electrospray mass spectrometry

  • J. Alexander Willms,
  • Rita Beel,
  • Martin L. Schmidt,
  • Christian Mundt and
  • Marianne Engeser

Beilstein J. Org. Chem. 2014, 10, 2027–2037, doi:10.3762/bjoc.10.211

Graphical Abstract
  • charged proline catalyst has been tested in the direct asymmetric inverse aldol reaction between aldehydes and diethyl ketomalonate. Two intermediates in accordance with the List–Houk mechanism for enamine catalysis have been detected and characterized by gas-phase fragmentation. In addition, their
  • ]+. In contrast, signals for the remaining two intermediates Ibuntagged and IVbuntagged have not been found, which probably is due to their very low concentration in the reaction equilibria as well as to their facile fragmentation during ESI. Note that the group of Metzger has successfully achieved the
  • detection of a similar intermediate for the aldol reaction beween acetone and selected benzaldehydes using rather unusual and presumably extremely soft ESI conditions, and their results indeed confirm its facile fragmentation [20]. Interestingly, the signal at m/z 290.12 can be assigned to a further
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Published 28 Aug 2014

Expeditive synthesis of trithiotriazine-cored glycoclusters and inhibition of Pseudomonas aeruginosa biofilm formation

  • Meriem Smadhi,
  • Sophie de Bentzmann,
  • Anne Imberty,
  • Marc Gingras,
  • Raoudha Abderrahim and
  • Peter G. Goekjian

Beilstein J. Org. Chem. 2014, 10, 1981–1990, doi:10.3762/bjoc.10.206

Graphical Abstract
  • fragmentation of the cluster core, which preceded complete deprotection of the carbohydrate groups. We were unable to obtain the deprotected glycoclusters by this route. We therefore investigated a direct route to the glycoasterisks using unprotected azidosugars, thus avoiding the final deprotection step. The
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Published 25 Aug 2014

Application of cyclic phosphonamide reagents in the total synthesis of natural products and biologically active molecules

  • Thilo Focken and
  • Stephen Hanessian

Beilstein J. Org. Chem. 2014, 10, 1848–1877, doi:10.3762/bjoc.10.195

Graphical Abstract
  • phosphonamides, which require harsher conditions to undergo fragmentation [19], cyclic oxaphosphetane oxide 26 releases the corresponding olefin 27 upon treatment with cold acetic acid [18]. Moreover, the only weakly basic nature of the “soft” phosphonamide anion favors the attack on the carbonyl group over
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Published 13 Aug 2014

Macrocyclic bis(ureas) as ligands for anion complexation

  • Claudia Kretschmer,
  • Gertrud Dittmann and
  • Johannes Beck

Beilstein J. Org. Chem. 2014, 10, 1834–1839, doi:10.3762/bjoc.10.193

Graphical Abstract
  • fragmentation and rearrangement reaction had occurred. Under the applied conditions 1 is completely converted to dihydroindoloquinolinone 3 (Scheme 2). In accordance with the effortlessness of the conversion reaction, the mass spectrum of 1 is dominated by the [M/2]+ signal. The indoloquinolinone 3 forms
  • isocyanates lead to indoloquinolinones. The crystal structure of the N-methylated congener of 3 has been determined [15]. Thermal treatment of 2 does not lead to fragmentation or sublimation of volatile material as observed for 1. Macrocycle 2 is soluble in dimethylformamide (DMF) or dimethyl sulfoxide (DMSO
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Published 12 Aug 2014

Structure elucidation of female-specific volatiles released by the parasitoid wasp Trichogramma turkestanica (Hymenoptera: Trichogrammatidae)

  • Armin Tröger,
  • Teris A. van Beek,
  • Martinus E. Huigens,
  • Isabel M. M. S. Silva,
  • Maarten A. Posthumus and
  • Wittko Francke

Beilstein J. Org. Chem. 2014, 10, 767–773, doi:10.3762/bjoc.10.72

Graphical Abstract
  • eV EI mass spectra of the synthetic compounds to be almost identical. Though the mass spectra of 8 (Figure 3) and that of the natural product A (Figure 1) showed strong similarities, small but decisive qualitative and quantitative differences in the fragmentation pattern were obvious. In contrast to
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Published 02 Apr 2014

Preparation of new alkyne-modified ansamitocins by mutasynthesis

  • Kirsten Harmrolfs,
  • Lena Mancuso,
  • Binia Drung,
  • Florenz Sasse and
  • Andreas Kirschning

Beilstein J. Org. Chem. 2014, 10, 535–543, doi:10.3762/bjoc.10.49

Graphical Abstract
  • evaluate the sterical and electronical properties of mutasynthon 11 with respect to bioprocessing, 3-amino-5-bromobenzoic acid (9) was next employed in feeding experiments. It was well processed to a series of new ansamitocin derivatives 22a–f (Scheme 5). Again, all derivatives showed common fragmentation
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Published 03 Mar 2014
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