Iron-catalyzed domino coupling reactions of π-systems

• Austin Pounder and
• William Tam

Beilstein J. Org. Chem. 2021, 17, 2848–2893, doi:10.3762/bjoc.17.196

• arylative spirocyclization reaction delivered product 40a in comparable yield, suggesting an initial in situ reduction of the Fe(III) precatalyst occurs in the early stages of the catalytic cycle. Although the mechanisms of Fe-catalyzed cross-coupling reactions are often complex [74][75] (Scheme 8), the

Synthetic strategies toward 1,3-oxathiolane nucleoside analogues

• Umesh P. Aher,
• Dhananjai Srivastava,
• Girij P. Singh and
• Jayashree B. S

Beilstein J. Org. Chem. 2021, 17, 2680–2715, doi:10.3762/bjoc.17.182

Ligand-dependent stereoselective Suzuki–Miyaura cross-coupling reactions of β-enamido triflates

• Tomáš Chvojka,
• Athanasios Markos,
• Svatava Voltrová,
• Radek Pohl and
• Petr Beier

Beilstein J. Org. Chem. 2021, 17, 2657–2662, doi:10.3762/bjoc.17.179

• 2D ROESY NMR analysis showing interaction between the alkenyl hydrogen and ortho-hydrogens on the aryl rings. Based on previously proposed mechanisms of isomerization in Suzuki cross-coupling reactions, we suggest the following explanation for the observed isomerization [25][29] (Scheme 3). In the

• -substituted enamides. Substrate scope of the Suzuki coupling leading to enamides 2 and 3. aRatio determined by 19F NMR; byield determined by 19F NMR using PhCF3 as an internal standard; cisolated yield; disolated as a mixture of isomers E/Z = 64:36. Proposed mechanisms for the formed Suzuki coupling retention

Recent advances in organocatalytic asymmetric aza-Michael reactions of amines and amides

• Pratibha Sharma,
• Raakhi Gupta and
• Raj K. Bansal

Beilstein J. Org. Chem. 2021, 17, 2585–2610, doi:10.3762/bjoc.17.173

• appears that in this case, both activation mechanisms, namely through hydrogen bonding and iminium ion formation are operating. Using the same chiral cinchona-based primary-tertiary diamine as catalyst (cat. 11), Zhai et al. developed a highly efficient intramolecular enantioselective aza-Michael addition

Cryogels: recent applications in 3D-bioprinting, injectable cryogels, drug delivery, and wound healing

• Luke O. Jones,
• Leah Williams,
• Tasmin Boam,
• Martin Kalmet,
• Chidubem Oguike and
• Fiona L. Hatton

Beilstein J. Org. Chem. 2021, 17, 2553–2569, doi:10.3762/bjoc.17.171

• during degradation of cryogels, the walls of the cryogel decrease in thickness and are in some cases broken. This analysis was made for enzyme-degraded cryogels, so it is unclear whether the process is likely to occur for cryogels degraded by other mechanisms such as disulphide cleavage [30][31] and

• deposition mechanisms, e.g., the maximum deposition force and/or syringe tip size (0.8 mm used for hydrogels) for certain printers, place restrictions on highly viscous materials. These material properties have a direct influence on the final printing resolution. The resolution should be adequate for

Visible-light-mediated copper photocatalysis for organic syntheses

• Yajing Zhang,
• Qian Wang,
• Zongsheng Yan,
• Donglai Ma and
• Yuguang Zheng

Beilstein J. Org. Chem. 2021, 17, 2520–2542, doi:10.3762/bjoc.17.169

• widely investigated, because they are abundant and less expensive. This review discusses the scope and application of photoinduced copper-based catalysis along with recent progress in this field. The special features and mechanisms of copper photocatalysis and highlights of the applications of the copper

• ; mechanisms of copper photocatalysis; photoinduced copper-based catalysis; photoredox catalysis; special features of copper photocatalysis; Introduction Solar light is an inexhaustible and free energy source for green plants and bacteria. Photosynthetic organisms absorb solar energy and convert it into

• discourage development of ruthenium and iridium-based catalysts [21]. Copper salts have become popular materials for photoredox catalysts due to their abundance, low cost, and ability to provide strong photoexcited reducing power [21][22][23][24]. In this review, the different catalysis mechanisms between

Exfoliated black phosphorous-mediated CuAAC chemistry for organic and macromolecular synthesis under white LED and near-IR irradiation

• Azra Kocaarslan,
• Zafer Eroglu,
• Önder Metin and
• Yusuf Yagci

Beilstein J. Org. Chem. 2021, 17, 2477–2487, doi:10.3762/bjoc.17.164

• indicated that structurally diverse polymers formed by different polymerization mechanisms can readily be linked just by a simple NIR-induced CuAAC reaction. The macromolecular scope was further extended to the preparation of cross-linked materials. Thus, the formulations containing bisphenol A di(3-azido-2

Recent advances in the tandem annulation of 1,3-enynes to functionalized pyridine and pyrrole derivatives

• Yi Liu,
• Puying Luo,
• Yang Fu,
• Tianxin Hao,
• Xuan Liu,
• Qiuping Ding and
• Yiyuan Peng

Beilstein J. Org. Chem. 2021, 17, 2462–2476, doi:10.3762/bjoc.17.163

• introduce the applications of the products and the reaction mechanisms for the synthesis of corresponding N-heterocycles. Keywords: 1,3-enyne; functionalization; pyridine; pyrrole; tandem annulation; Introduction The pyridine moiety is an important class of six-membered N-heterocycles that is widely found

Targeting active site residues and structural anchoring positions in terpene synthases

• Anwei Hou and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2021, 17, 2441–2449, doi:10.3762/bjoc.17.161

• mechanisms; isotopes; site-directed mutagenesis; terpenes; Introduction Terpenoids now span more than 90,000 known compounds, which makes them by far the largest class of natural products [1]. Despite this fact, all compounds are made from only two C5 building blocks, dimethylallyl diphosphate (DMAPP) and

Synthesis of 5-arylacetylenyl-1,2,4-oxadiazoles and their transformations under superelectrophilic activation conditions

• Andrey I. Puzanov,
• Dmitry S. Ryabukhin,
• Anna S. Zalivatskaya,
• Dmitriy N. Zakusilo,
• Darya S. Mikson,
• Irina A. Boyarskaya and
• Aleksander V. Vasilyev

Beilstein J. Org. Chem. 2021, 17, 2417–2424, doi:10.3762/bjoc.17.158

• bond of these oxadiazoles quantitatively resulted in E/Z-vinyl triflates. The reactions of the cationic intermediates have been studied by DFT calculations and the reaction mechanisms are discussed. Keywords: acetylene-oxadiazoles; Friedel–Crafts reaction; hydroarylation; superelectrophilic activation

Synthesis of phenanthridines via a novel photochemically-mediated cyclization and application to the synthesis of triphaeridine

• Songeziwe Ntsimango,
• Kennedy J. Ngwira,
• Moira L. Bode and
• Charles B. de Koning

Beilstein J. Org. Chem. 2021, 17, 2340–2347, doi:10.3762/bjoc.17.152

• . To be effective, the desired cyclization needs a second methoxy substituent ortho- or para- to the leaving group, which in this case is an aromatic methoxy substituent. Based on these results we suggest two possible mechanisms for these transformations. Both would proceed through an intermediary

Constrained thermoresponsive polymers – new insights into fundamentals and applications

• Patricia Flemming,
• Alexander S. Münch,
• Andreas Fery and
• Petra Uhlmann

Beilstein J. Org. Chem. 2021, 17, 2123–2163, doi:10.3762/bjoc.17.138

• outline the existing knowledge on thermosensitive polymers from a physicochemical rather than a synthetic point of view in order to gain a deeper understanding of the mechanisms involved in the phase transition with upper critical demixing point versus lower critical demixing point. The fundamental

• intra- and intermolecular interactions between polymer segments are favored and the polymer begins to precipitate. A comparison of the calorimetrically determined enthalpies of mixture ∆mH for PNAGA and PNIPAAm reveals the different mechanisms. The entropically driven LCST phase transition of PNIPAAm

Catalyzed and uncatalyzed procedures for the syntheses of isomeric covalent multi-indolyl hetero non-metallides: an account

• Ranadeep Talukdar

Beilstein J. Org. Chem. 2021, 17, 2102–2122, doi:10.3762/bjoc.17.137

• the similar mechanisms. First, the Brønsted or Lewis acid coordinates with silane 51 leading to a solvent-stabilized electron-deficient silane complex 57, where N-protected indole attacks in a Friedel–Crafts fashion to give the 3-silylindoles 60 along with molecular hydrogen (Scheme 7b and Scheme 7d

• indolyl amines through Buchwald–Hartwig cross coupling. Synthesis of 3,3’-bis(indolyl) ethers. C–H silylation of indoles. n-BuLi-mediated syntheses of bis(indol-3-yl)silanes. Acid-catalyzed syntheses of bis(indol-3-yl)silanes and mechanisms. B(C6F5)3 and Al(C6F5)3-catalyzed syntheses of bis(indol-3-yl

Asymmetric organocatalyzed synthesis of coumarin derivatives

• Natália M. Moreira,
• Lorena S. R. Martelli and
• Arlene G. Corrêa

Beilstein J. Org. Chem. 2021, 17, 1952–1980, doi:10.3762/bjoc.17.128

• mechanisms occur in parallel, which results in the formation of the Michael adduct as a byproduct and the desired spirocyclopentanes 104. It is noteworthy that the mechanistic studies showed that the product is formed through a concerted mechanism and therefore is not part of an intermediate adduct. A

On the application of 3d metals for C–H activation toward bioactive compounds: The key step for the synthesis of silver bullets

• Renato L. Carvalho,
• Amanda S. de Miranda,
• Mateus P. Nunes,
• Roberto S. Gomes,
• Guilherme A. M. Jardim and
• Eufrânio N. da Silva Júnior

Beilstein J. Org. Chem. 2021, 17, 1849–1938, doi:10.3762/bjoc.17.126

• have been used as additives in these reactions and are suggested to act as ligands, assist proton transfer and promote the formation of oligovanadates by decreasing the pH value of the solution. The mechanisms of some vanadium-mediated oxidation reactions of alkanes have been studied, most of them

• methods include V2O5 and VO(acac)2 used for the alkylation of 2-naphthol and nitrogen-containing heteroaromatic moieties containing N-methylmorpholine-N-oxide, tetrahydroisoquinolines, and N,N-dimethylacetamide [107][108][109][110][111][112][113]. The mechanisms involving oxidation of the amine mediated

Cationic oligonucleotide derivatives and conjugates: A favorable approach for enhanced DNA and RNA targeting oligonucleotides

• Mathias B. Danielsen and
• Jesper Wengel

Beilstein J. Org. Chem. 2021, 17, 1828–1848, doi:10.3762/bjoc.17.125

• . The key features of ASOs further enable them to be transformed into personalized medicines, eventually even targeting patient-specific sequences and very rare diseases [1]. ASOs can mediate gene silencing via different mechanisms of action. ASOs that induce RNase H degradation of the endogenous RNA

Natural products in the predatory defence of the filamentous fungal pathogen Aspergillus fumigatus

• Jana M. Boysen,
• Nauman Saeed and
• Falk Hillmann

Beilstein J. Org. Chem. 2021, 17, 1814–1827, doi:10.3762/bjoc.17.124

• , physiological adaptations and chemical defence mechanisms to optimize their living conditions and resist competitors, parasites and predators [3][4][5]. These bioactive compounds are often considered as secondary metabolites (SM) which are involved in communication, symbiotic interactions, pathogenicity or

• human pathogenic fungi like A. fumigatus, one of the most common airborne fungal pathogens, might lead to new insight in virulence mechanisms and the role of SMs therein [32]. The aim of this review is to depict the fungal secondary metabolite potential and its role in an ecological context using A

Development of N-F fluorinating agents and their fluorinations: Historical perspective

• Teruo Umemoto,
• Yuhao Yang and
• Gerald B. Hammond

Beilstein J. Org. Chem. 2021, 17, 1752–1813, doi:10.3762/bjoc.17.123

• and reactions of these reagents are described chronologically and the review also discusses the relative fluorination power of each reagent and their mechanisms chronicling developments from a historical perspective. Keywords: N-F fluorinating agent; fluorination; fluorodiazoniabicyclo[2.2.2]octane

A systems-based framework to computationally describe putative transcription factors and signaling pathways regulating glycan biosynthesis

• Theodore Groth,
• Rudiyanto Gunawan and
• Sriram Neelamegham

Beilstein J. Org. Chem. 2021, 17, 1712–1724, doi:10.3762/bjoc.17.119

• mechanisms that may contribute to different glycan signatures. In our analysis, TF–glycogene relationships for breast cancer derived by filtering Cistrome Cancer DB were enriched for the glycosylation pathways. Figure 3 summarizes these cancer-related TF–glycosylation pathway relationships for luminal (type

Chemical approaches to discover the full potential of peptide nucleic acids in biomedical applications

• Nikita Brodyagin,
• Martins Katkevics,
• Venubabu Kotikam,
• Christopher A. Ryan and
• Eriks Rozners

Beilstein J. Org. Chem. 2021, 17, 1641–1688, doi:10.3762/bjoc.17.116

• electrostatic repulsion. The maintenance and function of long double-stranded DNA (dsDNA) is achieved through complex mechanisms involving histones and other proteins. Large non-coding RNAs (e.g., ribosomes) manage electrostatic repulsion using positively charged RNA-binding proteins and cations (e.g

A recent overview on the synthesis of 1,4,5-trisubstituted 1,2,3-triazoles

• Pezhman Shiri,
• Ali Mohammad Amani and
• Thomas Mayer-Gall

Beilstein J. Org. Chem. 2021, 17, 1600–1628, doi:10.3762/bjoc.17.114

• ⋅PhMe in DCE at 60 °C. A series of o-alkynylated p-quinone methides containing electron-donating, electron-withdrawing, halogen, and alkyl groups was treated with Me3SiN3 under the optimized reaction conditions and produced the desired fused 1,2,3-triazole derivatives (Scheme 31) [57]. Two mechanisms

• these products in academia, pharmacy, and industry. This overview summarizes the latest advances in the synthesis of fully decorated triazoles. In many cases, the reaction mechanisms of triazole formation have been discussed. The current overview can serve as a base for future advancements in modern

Synthetic accesses to biguanide compounds

• Oleksandr Grytsai,
• Cyril Ronco and
• Rachid Benhida

Beilstein J. Org. Chem. 2021, 17, 1001–1040, doi:10.3762/bjoc.17.82

• mechanisms for this formation. The first one consists of a direct intramolecular addition–elimination of the triguanide into triazine (path A); and the second involves a tautomeric exchange and subsequent amine elimination from the cyclic aminal intermediate (path B). The isolation of the trisubstituted

Enhanced target cell specificity and uptake of lipid nanoparticles using RNA aptamers and peptides

• Roslyn M. Ray,
• Anders Højgaard Hansen,
• Maria Taskova,
• Bernhard Jandl,
• Jonas Hansen,
• Citra Soemardy,
• Kevin V. Morris and
• Kira Astakhova

Beilstein J. Org. Chem. 2021, 17, 891–907, doi:10.3762/bjoc.17.75

• also be due to differences in target receptor expression in the cell types and/or differences in the affinity and specificity of these aptamers for the target receptors and/or differences in the mechanisms of uptake. Finally, the formulation procedure also likely influences the ability of the aptamers

Kinetics of enzyme-catalysed desymmetrisation of prochiral substrates: product enantiomeric excess is not always constant

• Peter J. Halling

Beilstein J. Org. Chem. 2021, 17, 873–884, doi:10.3762/bjoc.17.73

• Peter J. Halling WestCHEM, Dept Pure & Applied Chemistry, University of Strathclyde, Glasgow G1 1XL, Scotland, UK 10.3762/bjoc.17.73 Abstract The kinetics of enzymatic desymmetrisation were analysed for the most common kinetic mechanisms: ternary complex ordered (prochiral ketone reduction); ping

• reaction proceeds to high conversion. For example, an ee of 0.95 at the start of the reaction can decline to less than 0.5 at 95% of equilibrium conversion, but for different enzyme properties it will remain almost unchanged. For most mechanisms a single function of multiple enzyme rate constants (which

• can be termed ee decline parameter, eeDP) accounts for the major effect on the tendency for the ee to decline. For some mechanisms, the concentrations or ratios of the starting materials have an important influence on the fall in ee. For the application of enzymatic desymmetrisation it is important to

Microwave-assisted multicomponent reactions in heterocyclic chemistry and mechanistic aspects

• Shivani Gulati,
• Stephy Elza John and
• Nagula Shankaraiah

Beilstein J. Org. Chem. 2021, 17, 819–865, doi:10.3762/bjoc.17.71

• proposed two different mechanisms in which the first mechanism involved two subsequent reactions. The first one being a Knoevenagel condensation between aromatic aldehyde and ethyl cyanoacetate to yield a Knoevenagel intermediate A which upon subsequent reaction with benzamidine, forms Michael adduct B. A

• approach was performed. Two possible mechanisms have been postulated for the formation of 125. The reaction is initiated by the Knoevenagel condensation of aldehyde and malononitrile (51) forming A. Further, a base-catalyzed Michael addition of acetamide over intermediate A results in the formation of