Synthesis of non-racemic 4-nitro-2-sulfonylbutan-1-ones via Ni(II)-catalyzed asymmetric Michael reaction of β-ketosulfones

• Alexander N. Reznikov,
• Anastasiya E. Sibiryakova,
• Marat R. Baimuratov,
• Eugene V. Golovin,
• Victor B. Rybakov and
• Yuri N. Klimochkin

Beilstein J. Org. Chem. 2019, 15, 1289–1297, doi:10.3762/bjoc.15.127

• coordinated to Ni in more Lewis acidic equatorial position, whereas the nitroalkene is positioned in apical by avoiding the steric repulsion of benzyl groups (TS2-I and 2-II vs TS1-I and 1-II, Scheme 2). Additional hydrogen bonding between the hydrogen atom of the amino group and the oxygen atom of the

Bambusuril analogs based on alternating glycoluril and xylylene units

• Tomáš Lízal and
• Vladimír Šindelář

Beilstein J. Org. Chem. 2019, 15, 1268–1274, doi:10.3762/bjoc.15.124

• ; supramolecular chemistry; Introduction Macrocycles consisting of urea building blocks play an important role in supramolecular chemistry [1]. Urea N–H motifs provide macrocycles with the ability to act as anion receptors due to the stabilizing effect of N–H···anion hydrogen bonding [2][3][4]. Furthermore, the

• urea groups can participate in intermolecular hydrogen bonding resulting in the formation of tubular [5][6][7] or gel-like [8] structures. Ureas lacking of N–H hydrogen atoms such as ethyleneureas, glycolurils, and biotin are also important building blocks of macrocyclic receptors such as cucurbiturils

• [9] and hemicucurbiturils [10]. Bambus[6]urils are a special case of hemicucurbiturils, which comprise six glycoluril units connected by six methylene bridges within their structure [11][12]. Due to their hydrophobic cavity with 12 methine hydrogen atoms available for hydrogen bonding, bambus[6]urils

Self-assembly behaviors of perylene- and naphthalene-crown macrocycle conjugates in aqueous medium

• Xin Shen,
• Bo Li,
• Tiezheng Pan,
• Jianfeng Wu,
• Yangxin Wang,
• Jie Shang,
• Yan Ge,
• Lin Jin and
• Zhenhui Qi

Beilstein J. Org. Chem. 2019, 15, 1203–1209, doi:10.3762/bjoc.15.117

• through hydrogen bonding and metal ion coordination in nonpolar solvents [66][67][68]. Compared with NDI, PDI has more aromatic rings to generate stronger intermolecular π−π stacking, leading to molecular aggregates more easily, and these aggregates or supramolecular assemblies can give rise to desirable

Molecular recognition using tetralactam macrocycles with parallel aromatic sidewalls

• Dong-Hao Li and
• Bradley D. Smith

Beilstein J. Org. Chem. 2019, 15, 1086–1095, doi:10.3762/bjoc.15.105

• enables them to be effective hosts for a wide range of guest molecules including organic biscarbonyl derivatives, near-infrared dyes, acenes, precious metal halide complexes, trimethylammonium ion-pairs, and saccharides. Keywords: fluorescent dye; host–guest chemistry; hydrogen bonding; hydrophobic

• the central cavity. In organic solvents, hydrogen bonding with the four tetralactam NH residues is the dominant interaction that drives encapsulation of complementary guests, with aromatic stacking as a secondary contributor [23][24][25]. In water, the thermodynamic importance of these non-covalent

• factors is reversed; hydrogen bonding is relatively weak and strong guest association occurs when hydrophobic sections of a complementary guest are able to contact the hydrophobic interior surfaces of the two aromatic sidewalls [26]. The first macrocycle system in Scheme 1 to be studied in detail was

Fabrication, characterization and adsorption properties of cucurbit[7]uril-functionalized polycaprolactone electrospun nanofibrous membranes

• Changzhong Chen,
• Fengbo Liu,
• Xiongzhi Zhang,
• Zhiyong Zhao and
• Simin Liu

Beilstein J. Org. Chem. 2019, 15, 992–999, doi:10.3762/bjoc.15.97

• ][23][24]. Through hydrophobic effects, ion–dipole interactions, and/or hydrogen bonding, CB[n]s show selective molecular recognition properties towards cationic and neutral guests [25][26]. In the last two decades, CB[n]s have been used for a variety of applications including supramolecular catalysis

Catalytic asymmetric oxo-Diels–Alder reactions with chiral atropisomeric biphenyl diols

• Chi-Tung Yeung,
• Wesley Ting Kwok Chan,
• Wai-Sum Lo,
• Ga-Lai Law and
• Wing-Tak Wong

Beilstein J. Org. Chem. 2019, 15, 955–962, doi:10.3762/bjoc.15.92

• hydrogen bonding organocatalyst for the reaction between 1-dimethylamino-3-tert-butyldimethylsilyloxy-1,3-butadiene (Rawal’s diene) and aldehydes with excellent enantioselectivities (aromatic aldehyde: up to 86–98% ee) in 2003 [27]. Activation via a single-point hydrogen bond between one of the hydroxy

• groups of the TADDOL and the carbonyl oxygen of the aldehyde was proposed to be a crucial factor for the success of this organocatalyst in the reaction. Two years later, they reported another efficient diol-based hydrogen bonding organocatalyst, BAMOL, for catalyzing the same oxo-DA reactions with a

• library of aldehydes (aromatic: 97–99% ee; aliphatic: 84–98% ee) [28]. Thereafter, many different kinds of hydrogen bonding-based organocatalysts have been developed for oxo-DA reactions [29][30][31][32][33][34][35]. One kind of organocatalyst in particular, which is based on an oxazoline template with

Halogen bonding and host–guest chemistry between N-alkylammonium resorcinarene halides, diiodoperfluorobutane and neutral guests

• Fangfang Pan,
• Mohadeseh Dashti,
• Michael R. Reynolds,
• Kari Rissanen,
• John F. Trant and
• Ngong Kodiah Beyeh

Beilstein J. Org. Chem. 2019, 15, 947–954, doi:10.3762/bjoc.15.91

• type of directional non-covalent interaction, is regarded as the “long lost brother” of hydrogen bonding (HB) [6][7]. Although XB in many aspects is very similar to HB, and in most cases not as strong as classical HB, the character of XB, such as hydrophobicity, adjustability, or softness, allows these

• yellow cloud. (a) The halogen bonding (blue broken lines), hydrogen bonding (red broken lines) and the host–guest effect (water molecules in CPK, and the cavity space in transparent yellow cloud) in Water@2&DIOFB; (b) The halogen bonded polymer. Water molecules in CPK mode and all the other in ball-and

Mechanochemistry of supramolecules

• Anima Bose and
• Prasenjit Mal

Beilstein J. Org. Chem. 2019, 15, 881–900, doi:10.3762/bjoc.15.86

• capsule 40 formed through hydrogen-bonding and the cavity was found to be able to encapsulate different organic molecules such as alkanes, acids, amines, etc. The encapsulation of a [2.2]paracyclophane in the cage was achieved by ball milling at 30 Hz (Figure 22) and the host–guest product 40 was verified

• chemistry reactions, as it relies on soft force [97][98] or non-covalent interactions [2] such as hydrogen bonding [99], cation–π [100][101][102], anion–π [103], hydrophobic effect [104][105], halogen bonding [106][107][108][109], etc. As enzymes are structurally complex entities and are difficult to modify

Efficient synthesis of pyrazolopyridines containing a chromane backbone through domino reaction

• Razieh Navari,
• Saeed Balalaie,
• Saber Mehrparvar,
• Fatemeh Darvish,
• Frank Rominger,
• Fatima Hamdan and
• Sattar Mirzaie

Beilstein J. Org. Chem. 2019, 15, 874–880, doi:10.3762/bjoc.15.85

• . The use of a protic solvent seems to be essential for the progress of the reaction and may related to the dipole moment and also the hydrogen-bonding ability of protic solvents. The spectroscopic data confirmed the formation of 4a. The X-ray crystallographic data of compound 4a confirmed the structure

• molecules based on the pyrazolopyridine framework. ORTEP Structure of compound 4a and intermolecular hydrogen bonding; the ellipsoid probability level of each ORTEP diagram is 50%. Structures of synthesized pyrazolopyridines 4a–m. Reaction conditions: 3-formylchromone derivatives (1 mmol), primary amine

Strong hyperconjugative interactions limit solvent and substituent influence on conformational equilibrium: the case of cis-2-halocyclohexylamines

• Camila B. Francisco,
• Cleverton S. Fernandes,
• Ulisses Z. de Melo,
• Roberto Rittner,
• Gisele F. Gauze and
• Ernani A. Basso

Beilstein J. Org. Chem. 2019, 15, 818–829, doi:10.3762/bjoc.15.79

• halogen size. Instead, the equilibrium is influenced by solute–solvent hydrogen bonding with the hydroxy group. Besides the classical effects, interactions such as hyperconjugation has been pointed out as relevant in several studies involving cyclohexane derivatives [4][12][15][16][17][18][19][20]. Since

Solid-phase synthesis of biaryl bicyclic peptides containing a 3-aryltyrosine or a 4-arylphenylalanine moiety

• Iteng Ng-Choi,
• Àngel Oliveras,
• Lidia Feliu and
• Marta Planas

Beilstein J. Org. Chem. 2019, 15, 761–768, doi:10.3762/bjoc.15.72

• ][2][10][11][12][13][14]. The most frequently used are the formation of an amide bond between the N- and the C-terminus and the cyclization involving the side chain of two amino acids. The latter is considered more convenient, because it does not interfere on hydrogen bonding between the N- and C

Synthesis and selected transformations of 2-unsubstituted 1-(adamantyloxy)imidazole 3-oxides: straightforward access to non-symmetric 1,3-dialkoxyimidazolium salts

• Grzegorz Mlostoń,
• Małgorzata Celeda,
• Katarzyna Urbaniak,
• Marcin Jasiński,
• Vladyslav Bakhonsky,
• Peter R. Schreiner and
• Heinz Heimgartner

Beilstein J. Org. Chem. 2019, 15, 497–505, doi:10.3762/bjoc.15.43

• skeleton appeared in a narrow range at 89.0–86.9 ppm. Unexpectedly, in the case of 7e, the same procedure led to the final, crystalline product as a hydrochloride. Apparently, hydrogen bonding in this molecule is strong enough to bind an HCl molecule, which cannot be removed by treatment with solid NaHCO3

Synthesis and fluorescent properties of N(9)-alkylated 2-amino-6-triazolylpurines and 7-deazapurines

• Andrejs Šišuļins,
• Jonas Bucevičius,
• Yu-Ting Tseng,
• Irina Novosjolova,
• Kaspars Traskovskis,
• Ērika Bizdēna,
• Huan-Tsung Chang,
• Sigitas Tumkevičius and
• Māris Turks

Beilstein J. Org. Chem. 2019, 15, 474–489, doi:10.3762/bjoc.15.41

• solvent properties such as viscosity or hydrogen bonding. Interestingly, purine class compound 8c showed a dual-fluorescence character in the solvents of higher polarity (DMSO, MeCN) arising from the locally excited and charge transfer excited states, however, dual-fluorescence was not evident for the 7

LCST phase behavior of benzo-21-crown-7 with different alkyl chains

• Yan Deng,
• Xing Li,
• Qiao Zhang,
• Zheng Luo,
• Chengyou Han and
• Shengyi Dong

Beilstein J. Org. Chem. 2019, 15, 437–444, doi:10.3762/bjoc.15.38

• of linkage becomes more profound, the weak hydrogen bonding between water molecules and crown ethers are attenuated or destroyed, which will further prevent the aggregation of crown ethers and prohibit the occurrence of LCST. By the analyses and comparisons of the LCST behaviors of 3a–e and 5a–e, the

Synthesis of nonracemic hydroxyglutamic acids

• Dorota G. Piotrowska,
• Iwona E. Głowacka,
• Andrzej E. Wróblewski and
• Liwia Lubowiecka

Beilstein J. Org. Chem. 2019, 15, 236–255, doi:10.3762/bjoc.15.22

• additional substituents, tuning the conformational flexibility of analogues and introducing groups capable of hydrogen bonding. Crystallographic data obtained for glutamate receptors [13][14][15] showed complex set of atoms interacting electrostatically and through hydrogen bonds and the conclusions from

• ][44]. Natural occurrence as well as possibilities of glutamate-like biological activity modulated by additional hydrogen bonding with hydroxy groups inspired the interest in the synthesis of stereoisomers of hydroxyglutamic acids 2–4 (Figure 2). Since they contain two or three stereogenic centers

Silanediol versus chlorosilanol: hydrolyses and hydrogen-bonding catalyses with fenchole-based silanes

• Falco Fox,
• Jörg M. Neudörfl and
• Bernd Goldfuss

Beilstein J. Org. Chem. 2019, 15, 167–186, doi:10.3762/bjoc.15.17

• attractive target molecules due their hydrogen-bonding capabilities [1][2][3][4][5][6]. Two synthetic routes are available for syntheses of organosilanediols: If diphenylsilanes are used as building blocks, this route is well suited for syntheses of silanediols with electrophilic functions. In this case, the

• ], (thio)ureas [30][31] and phosphoric acid derivatives [27]. Cyclodiphosph(V)azanes [32][33][34][35] and silanediols [1][28][36] are two new hydrogen bonding scaffolds for anion recognition [37] and ion-pair catalysis [6][38]. Since Kondo et al. established silanediol 1 [39] as HBD for anion recognition

• chloride ion is abstracted from 10 and binds via hydrogen bonding to the catalyst (Scheme 6) [45][47]. This leads to an ion pair [cat•Cl]− and [isoquinolinium cation]+ (Scheme 6). The nucleophilic silyl ketene acetal reacts with the [isoquinolinium cation]+ and forms the C–C bond, yielding product 12

Ammonium-tagged ruthenium-based catalysts for olefin metathesis in aqueous media under ultrasound and microwave irradiation

• Łukasz Gułajski,
• Andrzej Tracz,
• Katarzyna Urbaniak,
• Stefan J. Czarnocki,
• Michał Bieniek and
• Tomasz K. Olszewski

Beilstein J. Org. Chem. 2019, 15, 160–166, doi:10.3762/bjoc.15.16

• Marcus postulated a trans-phase hydrogen bonding from water OH groups to H-bond acceptor sites of organic reactants contributing to a stabilisation of organic transition states enables the on-water catalysis [77]. Ben-Amotz et al. demonstrated that the effect of the water OH groups depends either on the

Computational characterization of enzyme-bound thiamin diphosphate reveals a surprisingly stable tricyclic state: implications for catalysis

• Ferran Planas,
• Michael J. McLeish and
• Fahmi Himo

Beilstein J. Org. Chem. 2019, 15, 145–159, doi:10.3762/bjoc.15.15

• hydrogen bonding distance of the C2 of the thiazolium ring [9][10][11][12][13][14]. While the importance of the catalytically critical ylide was readily recognized, obtaining evidence for the participation of the 4′-amino group and the imino tautomer IP proved more challenging. Initially, model compounds

• ) were obtained using DFT methods, employing a model of the cofactor along with the hydrogen-bonding carboxylate moiety [23]. Subsequently, a similar approach was used to characterize the nucleophilicity of the N1′ and N4′ centers [24]. In many cases, rather than simply focus on the cofactor

• position regardless of the state of the cofactor. A superposition with the crystal structure without substrate (PDB 1BFD) shows that the model calculations reproduce very well the position of this water (see Supporting Information File 1), even though the hydrogen-bonding pattern of the water molecule

Adhesion, forces and the stability of interfaces

• Robin Guttmann,
• Johannes Hoja,
• Christoph Lechner,
• Reinhard J. Maurer and
• Alexander F. Sax

Beilstein J. Org. Chem. 2019, 15, 106–129, doi:10.3762/bjoc.15.12

• large variety of WMIs. To some of them, special names are assigned, such as hydrogen bonding or hydrophobic interactions. In chemistry, these WMIs are frequently used as if they were basic interaction types. For a long time, dispersion was largely ignored in chemistry, attractive intermolecular

• their different flavors. Hydrogen bonding is a typical WMI. As such, it is composed of the abovementioned basic interactions, each having its own strength and range. Nevertheless, it is common practice in chemistry to speak about hydrogen bonding as if it was indeed a genuine basic interaction rather

• than a composed interaction. Instead of stressing the different compositions of the basic interactions, chemists speak of strong, moderate or weak hydrogen bonding [3]; sometimes even further divisions are made [4]. Hydrogen bonding was introduced nearly 100 years ago to explain the stabilization of

A simple and effective preparation of quercetin pentamethyl ether from quercetin

• Jin Tatsuzaki,
• Tomohiko Ohwada,
• Yuko Otani,
• Reiko Inagi and
• Tsutomu Ishikawa

Beilstein J. Org. Chem. 2018, 14, 3112–3121, doi:10.3762/bjoc.14.291

• University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0013, Japan 10.3762/bjoc.14.291 Abstract Among the five hydroxy (OH) groups of quercetin (3,5,7,3',4'-pentahydroxyflavone), the OH group at 5 position is the most resistant to methylation due to its strong intramolecular hydrogen bonding with the

• -methylation is difficult because the OH group at 5 position is resistant to alkylation due to its strong intramolecular hydrogen bonding with the carbonyl group at 4 position. Indeed, inconsistent experimental results have been reported in the literature; incomplete methylation occurred in some cases [24][34

• (run 1 in Table 2, see Supporting Information File 1). The tetramethyl ether 4 showed a lower-field-shifted signal at 12.64 ppm in the 1H NMR spectrum (see Supporting Information File 2), due to strong intramolecular hydrogen-bonding of the OH group at 5 position with the carbonyl group at 4 position

1,8-Bis(dimethylamino)naphthyl-2-ketimines: Inside vs outside protonation

• A. S. Antonov,
• A. F. Pozharskii,
• P. M. Tolstoy,
• A. Filarowski and
• O. V. Khoroshilova

Beilstein J. Org. Chem. 2018, 14, 2940–2948, doi:10.3762/bjoc.14.273

• proton sponge moiety to occupy the in,out-conformation [14] with the 1-NMe2 group participating in NHN intramolecular hydrogen bonding with the C=NH2+ group (Scheme 8). Indeed, in the case of 7b’, which contains three OMe groups, we have found direct evidence of this process: the 1-NMe2 group signal

• 10 (Scheme 8, right), which is out-protonated due to steric reasons [15]. In refs. [15][16][17] it was shown that hydrogen bonding to an out-inverted NMe2 group without the proton transfer does not noticeably change the chemical shift of methyl protons. Thus, in the case of 7b’, the chemical shift at

Nucleoside macrocycles formed by intramolecular click reaction: efficient cyclization of pyrimidine nucleosides decorated with 5'-azido residues and 5-octadiynyl side chains

• Jiang Liu,
• Peter Leonard,
• Sebastian L. Müller,
• Constantin Daniliuc and
• Frank Seela

Beilstein J. Org. Chem. 2018, 14, 2404–2410, doi:10.3762/bjoc.14.217

• ellipsoids are drawn at the 50% probability level and H-atoms are shown as small spheres of arbitrary size. Hydrogen bonds are shown as dashed lines. The crystal packing of 8 shows the intramolecular hydrogen-bonding network (projection parallel to the x-axis). N- and S-conformation for cyclonucleoside 8. B

Determining the predominant tautomeric structure of iodine-based group-transfer reagents by ¹⁷O NMR spectroscopy

• Nico Santschi,
• Cody Ross Pitts,
• Benson J. Jelier and
• René Verel

Beilstein J. Org. Chem. 2018, 14, 2289–2294, doi:10.3762/bjoc.14.203

• residual value (Table 1). Conceivably, this may be due to intermolecular hydrogen bonding with the solvent or other alcohol molecules in the concentrated solution. In fact, including a methanol solvent molecule as a hydrogen-bond donor in the DFT calculation will shift the δcalc in the right direction for

Tetrathiafulvalene – a redox-switchable building block to control motion in mechanically interlocked molecules

• Hendrik V. Schröder and
• Christoph A. Schalley

Beilstein J. Org. Chem. 2018, 14, 2163–2185, doi:10.3762/bjoc.14.190

• lasso, a structural motif which was also recently found in nature for peptides with high antibacterial efficacy [71]. In 12, the TTF molecule is not implemented in the thread but in the wheel component. In the neutral state, strong hydrogen bonding between the crown ether wheel and the dialkylammonium

• hydrogen bonding. Detailed electrochemical measurements and digital simulations revealed the ring still to be bound to the ammonium station in the TTF●+ state. However, after double oxidation a wheel distribution of 1:1 between the ammonium and the isoxazole station was found indicating a dynamic motion

• Figure 27b), donor–acceptor interactions and hydrogen bonding generate a neutral TTF dimer that is surrounded by cofacially oriented bipyridinium units [112]. The intertwined structure is locked by formation of platinum(II)–pyridine coordination bonds. Interestingly, the doubly interlocked catenane

A switchable [2]rotaxane with two active alkenyl groups

• Xiu-Li Zheng,
• Rong-Rong Tao,
• Rui-Rui Gu,
• Wen-Zhi Wang and
• Da-Hui Qu

Beilstein J. Org. Chem. 2018, 14, 2074–2081, doi:10.3762/bjoc.14.181

• a ΔδH3 = 0.51 ppm due to the association with the DB24C8 macrocycle through hydrogen bonding. All the evidences reveal that the functionalized macrocycle migrated from the DBA recognition site to the amide station when an external base was added to the solution of rotaxane R1. Then, 3 equiv