Strategies toward protecting group-free glycosylation through selective activation of the anomeric center

• A. Michael Downey and
• Michal Hocek

Beilstein J. Org. Chem. 2017, 13, 1239–1279, doi:10.3762/bjoc.13.123

Sugar-based micro/mesoporous hypercross-linked polymers with in situ embedded silver nanoparticles for catalytic reduction

• Qing Yin,
• Qi Chen,
• Li-Can Lu and
• Bao-Hang Han

Beilstein J. Org. Chem. 2017, 13, 1212–1221, doi:10.3762/bjoc.13.120

• (BET) of SugPOP-1 was found to be as high as 1220 m2 g−1 and about 1000 m2 g−1 for SugPOP-2 and SugPOP-3. The PSD profiles for all polymers (based on the nonlinear density functional theory (NLDFT) method) are shown in Figure 2b. The dominant PSD peaks for polymer SugPOP-2 are located at around 0.53

Cycloheximide congeners produced by Streptomyces sp. SC0581 and photoinduced interconversion between (E)- and (Z)-2,3-dehydroanhydrocycloheximides

• Li Yang,
• Ping Wu,
• Jinghua Xue,
• Huitong Tan,
• Zheng Zhang and
• Xiaoyi Wei

Beilstein J. Org. Chem. 2017, 13, 1039–1049, doi:10.3762/bjoc.13.103

• . The column temperature was controlled at 40 °C and detection wavelength was set at 280 nm. Computational details Molecular Merck force field (MMFF) calculations were done using the Spartan'14 program (Wavefunction Inc., Irvine, CA, USA). Density functional theory (DFT) and time-dependent density

• functional theory (TDDFT) calculations were performed with the Gaussian 09 program package [24]. For computations of ECD spectra, the conformers generated by a MMFF conformational search in an energy window of 10 kcal/mol were subjected to geometry optimization using the dispersion-corrected DFT-D3 method

Conformational study of L-methionine and L-cysteine derivatives through quantum chemical calculations and ³J_HH coupling constant analyses

• Weslley G. D. P. Silva,
• Carolyne B. Braga and
• Roberto Rittner

Beilstein J. Org. Chem. 2017, 13, 925–937, doi:10.3762/bjoc.13.94

• calculations, such as the Møller–Plesset (MP2) method and density functional theory (DFT) calculations, together with experimental techniques have been combined to achieve more accurate results [20][21][22][23][24]. Some amino acid derivatives have been recently studied by our research group, including the

Molecular-level architectural design using benzothiadiazole-based polymers for photovoltaic applications

• Vinila N. Viswanathan,
• Arun D. Rao,
• Upendra K. Pandey,
• Arul Varman Kesavan and
• Praveen C. Ramamurthy

Beilstein J. Org. Chem. 2017, 13, 863–873, doi:10.3762/bjoc.13.87

• studied. The polymer, derived from dithienylated benzothiodiazole and fluorene, P1, exhibited a highest occupied molecular orbital (HOMO) energy level at −5.48 eV. Density functional theory (DFT) studies as well as experimental measurements suggested that upon substitution of the acceptor with fluorine

• stability with onset decomposition temperature of >410 °C. Computational modeling of the three polymers was performed to gain insight into the molecular energy levels along with band gaps using density functional theory (DFT) at the B3LYP/6-31G (d,p) level as implemented in Gaussian-09 software [37]. For

• bridge, a torsion angle of 179° is found between the benzothiadiazole and thienothiophene part. This clearly indicates an increased planarity of the polymer P3 compared to P1 due to the presence of the fused π-bridge. Moreover, time-dependent density functional theory (TDDFT) calculations were also

Continuous-flow processes for the catalytic partial hydrogenation reaction of alkynes

• Carmen Moreno-Marrodan,
• Francesca Liguori and
• Pierluigi Barbaro

Beilstein J. Org. Chem. 2017, 13, 734–754, doi:10.3762/bjoc.13.73

• selectivity trend was explained in terms of both adsorption mode on and relative accessibility to Pd active sites, depending on surface potentials and hindrance of modifiers, on the basis of density functional theory and molecular dynamics calculations. The rationale was summarized in the so-called

Spectral and DFT studies of anion bound organic receptors: Time dependent studies and logic gate applications

• Srikala Pangannaya,
• Neethu Padinchare Purayil,
• Shweta Dabhi,
• Venu Mankad,
• Prafulla K. Jha,
• Satyam Shinde and
• Darshak R. Trivedi

Beilstein J. Org. Chem. 2017, 13, 222–238, doi:10.3762/bjoc.13.25

• understand the binding mechanism, we have performed a density functional theory (DFT) simulation on the receptor molecules using the GAUSSIAN 09 software package [44]. A closed-shell Becke–Lee–Yang–Parr hybrid exchange–correlation three-parameter functional (B3LYP) [45] along with the 6-311++G(d,p) basis set

Self-optimisation and model-based design of experiments for developing a C–H activation flow process

• Alexander Echtermeyer,
• Yehia Amar,
• Jacek Zakrzewski and
• Alexei Lapkin

Beilstein J. Org. Chem. 2017, 13, 150–163, doi:10.3762/bjoc.13.18

• in self-optimisation and model-development frameworks is not well documented in the literature. Very recently we have shown that a priori knowledge in the form of density functional theory level (DFT) mechanistic calculations can be used to propose process models and to perform in silico design of

Characterization of the synthetic cannabinoid MDMB-CHMCZCA

• Carina Weber,
• Stefan Pusch,
• Dieter Schollmeyer,
• Sascha Münster-Müller,
• Michael Pütz and
• Till Opatz

Beilstein J. Org. Chem. 2016, 12, 2808–2815, doi:10.3762/bjoc.12.279

• functional theory, see Supporting Information File 1 for details), a comparison of the experimental and calculated ECD spectra did not allow for a safe assignment of the cannabimimetic’s absolute configuration (Figure 4). The main two positive ECD signals in the range above 230 nm are correctly predicted by

• CO and/or a cyclohexyl radical or methylenecyclohexane. As MDMB-CHMCZCA bears a stereogenic center at C-1', the elucidation of the absolute configuration of the sample was attempted by ECD spectroscopy. While the UV spectra can be adequately predicted by TD-DFT calculations (time-dependent density

Effects of solvent additive on “s-shaped” curves in solution-processed small molecule solar cells

• John A. Love,
• Shu-Hua Chou,
• Ye Huang,
• Guilllermo C. Bazan and
• Thuc-Quyen Nguyen

Beilstein J. Org. Chem. 2016, 12, 2543–2555, doi:10.3762/bjoc.12.249

• measured to be 32 mg/mL for p-SIDT(FBTThCA8)2 compared with over 50 mg/mL for p-SIDT(FBTTh2)2 in chloroform at room temperature. Frontier molecular energy levels were estimated by cyclic voltammograms (CV) in dichloromethane and calculated theoretically by density functional theory (DFT) (Supporting

High performance p-type molecular electron donors for OPV applications via alkylthiophene catenation chromophore extension

• Paul B. Geraghty,
• Calvin Lee,
• Jegadesan Subbiah,
• Wallace W. H. Wong,
• James L. Banal,
• Mohammed A. Jameel,
• Trevor A. Smith and
• David J. Jones

Beilstein J. Org. Chem. 2016, 12, 2298–2314, doi:10.3762/bjoc.12.223

• and overlap, density functional theory (DFT) calculations were performed. Geometry optimization and molecular orbital surfaces were determined and are shown in Figure 11. Geometries of the BXR series were obtained at the D2 dispersion corrected B3LYP/6-311G(d,p) level of theory. Subsequent time

Experimental and theoretical investigations into the stability of cyclic aminals

• Edgar Sawatzky,
• Antonios Drakopoulos,
• Martin Rölz,
• Christoph Sotriffer,
• Bernd Engels and
• Michael Decker

Beilstein J. Org. Chem. 2016, 12, 2280–2292, doi:10.3762/bjoc.12.221

• density functional theory (DFT) based studies were applied to support and explain the results obtained. Rapid decomposition is observed in acidic aqueous media for all cyclic aminals which occurs as a reversible reaction. Electronic effects do not seem relevant with regard to stability, but the magnitude

• test compounds were predicted using the empirical algorithm of MoKa [38] and validated with density functional theory (DFT) energy calculations of all protonation patterns for compounds 8a and 13b (cf. Supporting Information File 1). We used the B3LYP-D3 functional [39][40][41] in combination with the

The direct oxidative diene cyclization and related reactions in natural product synthesis

• Juliane Adrian,
• Leona J. Gross and
• Christian B. W. Stark

Beilstein J. Org. Chem. 2016, 12, 2104–2123, doi:10.3762/bjoc.12.200

• functional theory calculations both by Strassner and co-workers (Mn(VII) and Os(VIII)) [12][13] and by Kirchner and co-workers (Ru(VIII)) [14]. Reasonable fractions of the trans-THF isomer can be produced using ruthenium tetroxide in specifically optimized solvent compositions [15] (for other means to obtain

• stereochemistry of the vicinal hydroxy ether motif of the product (Scheme 2). The stereochemistry across the THF ring is set in the cyclization event. As a result of geometrical constraints it is usually predominantly or even exclusively cis (Scheme 2) – a fact that has recently been corroborated through density

Varioloid A, a new indolyl-6,10b-dihydro-5aH-[1]benzofuro[2,3-b]indole derivative from the marine alga-derived endophytic fungus Paecilomyces variotii EN-291

• Peng Zhang,
• Xiao-Ming Li,
• Xin-Xin Mao,
• Attila Mándi,
• Tibor Kurtán and
• Bin-Gui Wang

Beilstein J. Org. Chem. 2016, 12, 2012–2018, doi:10.3762/bjoc.12.188

• time-dependent density functional theory-electronic circular dichroism (TDDFT-ECD) calculations. A similar compound, whose planar structure was previously described but the relative and absolute configurations and 13C NMR data were not reported, was also identified and was tentatively named as

Stereo- and regioselectivity of the hetero-Diels–Alder reaction of nitroso derivatives with conjugated dienes

• Lucie Brulíková,
• Aidan Harrison,
• Marvin J. Miller and
• Jan Hlaváč

Beilstein J. Org. Chem. 2016, 12, 1949–1980, doi:10.3762/bjoc.12.184

• nitroso heterodienophiles 29 (Scheme 8) was determined at the B3LYP/6-31G** level [86]. All calculations were performed with density functional theory (DFT) using the B3LYP functional implemented in the Gaussian 98 software. Nitrosomethane (29a) was selected as a model heterodienophile for a preliminary

• formation of 109, on the other hand, the steric hindrance was greatly reduced, and consequently no complete regioselectivity was observed. These results were supported by ab initio [HF/6-31G(d)] and density functional theory [B3 LYP/6-31G(d)] calculations. The use of a copper(I) species, without a

Experimental and theoretical investigations on the high-electron donor character of pyrido-annelated N-heterocyclic carbenes

• Michael Nonnenmacher,
• Dominik M. Buck and
• Doris Kunz

Beilstein J. Org. Chem. 2016, 12, 1884–1896, doi:10.3762/bjoc.12.178

• of Heidelberg University. Calculations. All calculations were performed based on density functional theory at the BP86/def2-TZVP [81][82][83][84][85] or B3LYP/def2-TZVP [86][87][88] level implemented in Turbomole [89][90][91][92][93][94][95][96][97]. The RI-approximation [98][99][100][101][102][103

Synthesis and properties of fluorescent 4′-azulenyl-functionalized 2,2′:6′,2″-terpyridines

• Adrian E. Ion,
• Liliana Cristian,
• Mariana Voicescu,
• Masroor Bangesh,
• Augustin M. Madalan,
• Daniela Bala,
• Constantin Mihailciuc and
• Simona Nica

Beilstein J. Org. Chem. 2016, 12, 1812–1825, doi:10.3762/bjoc.12.171

• origin of the fluorescence emission will be also described by time-dependent density functional theory (TDDFT) calculations. The ability of the terpyridine compounds to bind poisoning metal cations was investigated by spectrophotometric titrations of methanolic 4′-azulenyl-substituted terpyridine

• oscillator strengths for the herein described compounds 4a and 4b were calculated with time-dependent density functional theory (TDDFT) utilizing the following functionals: B3LYP [34][35][36][37], Coulomb-attenuated B3LYP (CAMB3LYP) [38], hybrid TPSS (TPSSH) [39], and M06 with double Hartree–Fock exchange

Synthesis of the C8’-epimeric thymine pyranosyl amino acid core of amipurimycin

• Pramod R. Markad,
• Navanath Kumbhar and
• Dilip D. Dhavale

Beilstein J. Org. Chem. 2016, 12, 1765–1771, doi:10.3762/bjoc.12.165

• results on conformational preferences of 12 and 13 were corroborated using geometry-optimized density functional theory (DFT). The geometrically optimized preferred conformations of 12 and 13 are depicted in Figure 3, and geometrical parameters for torsion angles and intramolecular hydrogen bonding

Methylpalladium complexes with pyrimidine-functionalized N-heterocyclic carbene ligands

• Dirk Meyer and
• Thomas Strassner

Beilstein J. Org. Chem. 2016, 12, 1557–1565, doi:10.3762/bjoc.12.150

• -NHC ligand [33]. To study the differences between both systems we synthesized palladium [34] and platinum [35] “hybrid complexes” with ligands combining both structural elements the pyrimidine as well as the NHC fragment. We also used density functional theory (DFT) calculations to investigate the

• (Figure 1). This can be explained by the strong donor character of the carbene which makes the trans isomer less favorable. NMR analysis of the reaction products confirms that only one complex is formed. Additional proof comes from density functional theory (DFT) calculations which predict isomer B to be

Biosynthesis of oxygen and nitrogen-containing heterocycles in polyketides

• Franziska Hemmerling and
• Frank Hahn

Beilstein J. Org. Chem. 2016, 12, 1512–1550, doi:10.3762/bjoc.12.148

• to give the pyran ring. This terminal 6-endo-tet cyclisation is likewise facilitated by AurD, overriding the 5-exo-tet pathway that should be favoured in spontaneous reaction according to Baldwin’s rules. Density functional theory calculations suggested that this reaction pathway is favoured, if the

The hydrolysis of geminal ethers: a kinetic appraisal of orthoesters and ketals

• Sonia L. Repetto,
• James F. Costello,
• Craig P. Butts,
• Joseph K. W. Lam and
• Norman M. Ratcliffe

Beilstein J. Org. Chem. 2016, 12, 1467–1475, doi:10.3762/bjoc.12.143

• (>400%) rate increase for this substrate – this is examined further. To understand the significant increase in the hydroxonium catalytic coefficient with varying C(2) substituent, computational conformational analyses of 5 and 16 were performed using Density Functional Theory to optimise the resultant

• was any enthalpic barrier to elimination of the protonated methoxy group, geometric scans for potential transition-states were made using Density Functional Theory calculations, by incrementally increasing and fixing the C(2)─OMe bond length for rotamers 16a–c after protonation, and allowing all other

Star-shaped and linear π-conjugated oligomers consisting of a tetrathienoanthracene core and multiple diketopyrrolopyrrole arms for organic solar cells

• Hideaki Komiyama,
• Chihaya Adachi and
• Takuma Yasuda

Beilstein J. Org. Chem. 2016, 12, 1459–1466, doi:10.3762/bjoc.12.142

• synthesized. Based on density functional theory calculations, the star-shaped TTA-DPP4 has a larger oscillator strength than the linear TTA-DPP2, and consequently, better photoabsorption property over a wide range of visible wavelengths. The photovoltaic properties of organic solar cells based on TTA-DPP4 and

• , rendering the molecules with narrower bandgaps, and broad and strong light absorptions. To gain insight into the geometric and electronic structures of TTA-DPP4 and TTA-DPP2, density functional theory (DFT) calculations were performed at the B3LYP/6-31G(d,p) level. The calculated energy levels and the

Ring-whizzing in polyene-PtL₂ complexes revisited

• Oluwakemi A. Oloba-Whenu,
• Thomas A. Albright and
• Chirine Soubra-Ghaoui

Beilstein J. Org. Chem. 2016, 12, 1410–1420, doi:10.3762/bjoc.12.135

• ; density functional theory (DFT); hapototropic rearrangements; HOMO–LUMO interactions; polyene-ML2 complexes; ring-whizzing; Introduction Polyene–transition metal complexes were found to undergo fluxional rearrangements as early as 1956 with the preparation of Cp2Fe(CO)2 [1]. The migration of an MLn unit

On the mechanism of imine elimination from Fischer tungsten carbene complexes

• Philipp Veit,
• Christoph Förster and
• Katja Heinze

Beilstein J. Org. Chem. 2016, 12, 1322–1333, doi:10.3762/bjoc.12.125

• reaction pathways for the formation of imine E-3 have been considered. For each pathway, density functional theory (DFT) calculations on the B3LYP/LANL2DZ (IEF-PCM toluene) level of theory have been performed to localize minimum structures and energies of the intermediates which are connected by transition

• pentacarbonyl tungsten complex W(CO)5(E-2) was investigated by density functional theory methods and mechanistic experimental studies (NMR, IR, UV–vis spectroscopy, FD mass spectrometry, kinetic studies, trapping of intermediates). All available data support the initial dissociation of a CO ligand to give the

• cells (Hellma, suprasil). FD mass spectra were recorded on a Thermo Fisher DFS mass spectrometer with a LIFDI upgrade. Elemental analyses were performed by the microanalytical laboratory of the chemical institutes of the University of Mainz. Density functional theory calculations were carried out with

Three new trixane glycosides obtained from the leaves of Jungia sellowii Less. using centrifugal partition chromatography

• Luíse Azevedo,
• Larissa Faqueti,
• Marina Kritsanida,
• Antonia Efstathiou,
• Despina Smirlis,
• Gilberto C. Franchi Jr,
• Grégory Genta-Jouve,
• Sylvie Michel,
• Louis P. Sandjo,
• Raphaël Grougnet and
• Maique W. Biavatti

Beilstein J. Org. Chem. 2016, 12, 674–683, doi:10.3762/bjoc.12.68

• supported by the theoretical calculation using time-dependent density functional theory. Thus, two Cotton Effects (CE) from the n→π* transition of the α,β-unsaturated lactone were revealed at 225 and 275 nm with alternative signs (Figure 5). The aforementioned data in conjunction to the absolute

• using density functional theory (DFT) at the B3LYP/6-311+g (d,p) level of theory. A check for imaginary frequencies was performed in order to confirm the presence of a real minimum. Calculations of the rotational strengths and excitation energies were realized using time dependent (TD) DFT at the same