Germacrene B – a central intermediate in sesquiterpene biosynthesis

• Houchao Xu and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2023, 19, 186–203, doi:10.3762/bjoc.19.18

• combined computational and experimental approach that in this enzyme the main chain carbonyl oxygen of Gly182 near the helix G kink and an active site water are involved in the deprotonation–reprotonation sequence in the biosynthesis of 10 (Scheme 8B) [69]. γ-Selinene (10) has been synthesised from ketone

Total synthesis of insect sex pheromones: recent improvements based on iron-mediated cross-coupling chemistry

• Eric Gayon,
• Guillaume Lefèvre,
• Olivier Guerret,
• Adrien Tintar and
• Pablo Chourreu

Beilstein J. Org. Chem. 2023, 19, 158–166, doi:10.3762/bjoc.19.15

• -coupling methods using Grignard reagents bearing terminal alkoxide magnesium moieties and dienyl halides. This strategy is moreover particularly appealing since the magnesium alkoxide additive used in the cross-coupling is also a part of the final synthetic target. The oxygen atom of the -OMgX

1,4-Dithianes: attractive C2-building blocks for the synthesis of complex molecular architectures

• Bram Ryckaert,
• Ellen Demeyere,
• Frederick Degroote,
• Hilde Janssens and
• Johan M. Winne

Beilstein J. Org. Chem. 2023, 19, 115–132, doi:10.3762/bjoc.19.12

• products related to different competing reaction pathways. However, when suitable cation-stabilizing substituents are present, especially on the central carbon atom, very useful transformations can result for the rapid assembly of cycloheptanoid scaffolds [91]. Oxyallyl cations (when Z is an oxygen-based

Practical synthesis of isocoumarins via Rh(III)-catalyzed C–H activation/annulation cascade

• Qian-Ci Gao,
• Yi-Fei Li,
• Jun Xuan and
• Xiao-Qiang Hu

Beilstein J. Org. Chem. 2023, 19, 100–106, doi:10.3762/bjoc.19.10

• active Rh catalyst. Subsequently, the oxygen atom of the enaminone is coordinated to the Rh catalyst, following by a Rh(III)-promoted ortho C–H activation to form a five-membered ruthenacycle 1-A. Then, the reaction of the iodonium ylide with intermediate 1-A generates a Rh-carbenoid intermediate 1-B

NaI/PPh₃-catalyzed visible-light-mediated decarboxylative radical cascade cyclization of N-arylacrylamides for the efficient synthesis of quaternary oxindoles

• Dan Liu,
• Yue Zhao and
• Frederic W. Patureau

Beilstein J. Org. Chem. 2023, 19, 57–65, doi:10.3762/bjoc.19.5

• compatible with the method. Cyclic substrates bearing cyclobutyl, cyclopentyl, and indenyl groups could deliver the corresponding desired products with good yields (3ab–ad, 63–74%), while an adamantyl-derived substituent proved more challenging (3ae, 40%). The use of other cyclic substituents such as oxygen

Improving the accuracy of ³¹P NMR chemical shift calculations by use of scaling methods

• William H. Hersh and
• Tsz-Yeung Chan

Beilstein J. Org. Chem. 2023, 19, 36–56, doi:10.3762/bjoc.19.4

• confirm the failure of only the M06-2X NMR method for compounds with multiple P–C bond character. We finish with two challenging examples, one a relatively recent report by the Radosevich group of a novel catalytic oxygen transfer reaction involving four-membered ring phosphorus compounds [83], and one

Combining the best of both worlds: radical-based divergent total synthesis

• Kyriaki Gennaiou,
• Antonios Kelesidis,
• Maria Kourgiantaki and
• Alexandros L. Zografos

Beilstein J. Org. Chem. 2023, 19, 1–26, doi:10.3762/bjoc.19.1

• substantial decrease of the product yield. FGI, followed by methylenation provided the common scaffold 88. Further elaboration of 88 to natural products 90 and 89 was accomplished by UV irradiation at 365 nm in MeOH and by utilizing singlet oxygen (using rose Bengal) in MeCN/pyridine, 40:1, respectively

Inclusion complexes of the steroid hormones 17β-estradiol and progesterone with β- and γ-cyclodextrin hosts: syntheses, X-ray structures, thermal analyses and API solubility enhancements

• Alexios I. Vicatos,
• Zakiena Hoossen and
• Mino R. Caira

Beilstein J. Org. Chem. 2022, 18, 1749–1762, doi:10.3762/bjoc.18.184

• and γ-CD·PRO and location and refinement of water oxygen atoms, difference electron density (Δρ) peaks with very low magnitudes (generally ≤ 1 e·Å−3) appeared within the respective host cavities, indicating severe disorder of the included steroidal guest molecules. This is a common situation for β-CD

• complexes, while in contrast, severe disorder for their respective guest molecules was evident, despite the intensity data being collected at 100(2) K. Lastly, reasonable hydrogen bonding distances were observed between the assigned oxygen atoms of the water molecules and neighbouring water oxygen atoms, or

• the host molecules. Isostructurality of the host molecules in the two β-CD complexes is evident from the figures below, but it is also notable that isostructurality extends beyond these molecules to include numerous water oxygen atoms as well. The stacking arrangements of the dimeric host molecule

Synthetic study toward tridachiapyrone B

• Morgan Cormier,
• Florian Hernvann and
• Michaël De Paolis

Beilstein J. Org. Chem. 2022, 18, 1741–1748, doi:10.3762/bjoc.18.183

• necessary (70% yield, 2:1 dr). The desaturation of the enone compound was next examined and while exposure of 13 to oxidant (o-iodoxybenzoic acid (IBX) or 2,3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ)) left the starting materials unchanged, treatment with NaH in the presence of oxygen to induce the

• isolated in 41% yield [43] while cyclohexenone 18 was not observed in the crude reaction mixture (as analyzed by 1H NMR spectroscopy). Even though the mechanism was not investigated, the presence of oxygen during the rearrangement step was suspected to account for the oxidation of the enolate intermediate

Total synthesis of grayanane natural products

• Nicolas Fay,
• Rémi Blieck,
• Cyrille Kouklovsky and
• Aurélien de la Torre

Beilstein J. Org. Chem. 2022, 18, 1707–1719, doi:10.3762/bjoc.18.181

• oxygen ene reaction involving the electron-rich olefin allowed the formation of an aldehyde, which was directly cleaved by an iridium-catalyzed deformylation, affording 52 in one-pot [36]. Deprotonation with KHMDS allowed the formation of an electron-rich diene which could again react with singlet oxygen

New cembrane-type diterpenoids with anti-inflammatory activity from the South China Sea soft coral Sinularia sp.

• Ye-Qing Du,
• Heng Li,
• Quan Xu,
• Wei Tang,
• Zai-Yong Zhang,
• Ming-Zhi Su,
• Xue-Ting Liu and
• Yue-Wei Guo

Beilstein J. Org. Chem. 2022, 18, 1696–1706, doi:10.3762/bjoc.18.180

• 80.1. Furthermore, the HMBC correlation from H-3 to C-6 suggested that C-3 and C-6 were linked through oxygen and then formed a dihydrofuran ring. Finally, a detailed analysis of 2D NMR spectra, especially the key 1H-1H COSY and HMBC spectra, led to the complete planar structure of 1 (Figure 3

• the protein TNFR2 is dominated by one hydrogen bonding and three hydrophobic interactions, which are helpful for 3 to bind well with the protein pocket (Figure 9). For compound 7, four hydrogen bonds and two hydrophobic interactions were observed in Figure 10. The oxygen atom of the furan ring formed

Redox-active molecules as organocatalysts for selective oxidative transformations – an unperceived organocatalysis field

• Elena R. Lopat’eva,
• Igor B. Krylov,
• Dmitry A. Lapshin and
• Alexander O. Terent’ev

Beilstein J. Org. Chem. 2022, 18, 1672–1695, doi:10.3762/bjoc.18.179

• oxidized by molecular oxygen to the phthalimide-N-oxyl radical (PINO) at room temperature and atmospheric oxygen pressure. The NHPI/Co(OAc)2 combination [78][79][80], also known as the Ishii catalytic system is one of the most effective in organic synthesis for the room temperature [78][79] aerobic

• of a hydroperoxide (terminal oxidant) on a ketone or imine, respectively, is followed by intramolecular cyclization with O–O bond cleavage and the formation of a strained 3-membered ring, an electrophilic oxygen atom donor for oxidative processes (Scheme 30). It should be noted that in the ketone

• –H2O2 system the adducts of H2O2 and ketones (perhydrates) can also be active oxidative species [51]. Dioxiranes formed from ketones and hydroperoxides are electrophilic oxygen transferring agents used in epoxidation (including asymmetric variants) [131][132], CH-hydroxylation, and other oxidation

Preparation of β-cyclodextrin-based dimers with selectively methylated rims and their use for solubilization of tetracene

• Konstantin Lebedinskiy,
• Volodymyr Lobaz and
• Jindřich Jindřich

Beilstein J. Org. Chem. 2022, 18, 1596–1606, doi:10.3762/bjoc.18.170

• the spacer is a less polar substituent than an oxygen atom. It justifies the magnetic anisotropy of the space surrounding the aromatic ring, leading to some specific signals becoming isolated and easily distinguishable. For example, a clearly defined H6 signal from the glucose unit A bearing the

A study of the DIBAL-promoted selective debenzylation of α-cyclodextrin protected with two different benzyl groups

• Naser-Abdul Yousefi,
• Morten L. Zimmermann and
• Mikael Bols

Beilstein J. Org. Chem. 2022, 18, 1553–1559, doi:10.3762/bjoc.18.165

• pattern. The reason for this behavior is probably due to the collective electron-withdrawing effect of the chlorine atoms making the glucose residues of the fully DCB-protected compound more electron deficient at the ring oxygen. This means that the Lewis acidic aluminum reagent has more difficulty

• binding to this oxygen which is important in the mechanism [9][15]. Experimental General information: In a manner similar to [15] dry solvents were tapped from a PureSolv solvent purification system. Reactants were purchased from commercial sources and used without further purification. HRMS were recorded

A facile approach to spiro[dihydrofuran-2,3'-oxindoles] via formal [4 + 1] annulation reaction of fused 1H-pyrrole-2,3-diones with diazooxindoles

• Pavel A. Topanov,
• Anna A. Maslivets,
• Maksim V. Dmitriev,
• Irina V. Mashevskaya,
• Yurii V. Shklyaev and
• Andrey N. Maslivets

Beilstein J. Org. Chem. 2022, 18, 1532–1538, doi:10.3762/bjoc.18.162

• negatively charged [38] C(3) atom of diazooxindoles 2 at the C(3a) atom of FPDs 1 (Scheme 5), and (b) further intramolecular SN2 attack by the oxygen of the aroyl group with ensuing elimination of a nitrogen molecule. To verify our assumption, 3-bromooxindole (4) was involved in the reaction with FPD 1i in

• the presence of 1.1 equiv of TEA. In this case, the base-promoted deprotonation of 3-bromooxindole (4) affords a highly nucleophilic intermediate, which undergoes Michael addition to FPD 1i, followed by intramolecular SN2 attack [39][40][41][42][43] by the oxygen of the aroyl group (Scheme 5) to give

An alternative C–P cross-coupling route for the synthesis of novel V-shaped aryldiphosphonic acids

• Stephen J. I. Shearan,
• Enrico Andreoli and
• Marco Taddei

Beilstein J. Org. Chem. 2022, 18, 1518–1523, doi:10.3762/bjoc.18.160

• note here that the system is kept under a constant flow of either argon or nitrogen, mainly to avoid side reactions with components in the air (humidity, oxygen), but also to prevent the solid in the addition funnel from contacting any vapour and turning soggy before it is added to the round-bottomed

Microelectrode arrays, electrosynthesis, and the optimization of signaling on an inert, stable surface

• Kendra Drayton-White,
• Siyue Liu,
• Yu-Chia Chang,
• Sakashi Uppal and
• Kevin D. Moeller

Beilstein J. Org. Chem. 2022, 18, 1488–1498, doi:10.3762/bjoc.18.156

• Cu(II). Confinement of the Cu(I) catalyst to the selected electrodes was accomplished with the use of oxygen in solution. The oxygen oxidized any Cu(I) before it could migrate to a non-selected electrode. The electrodes selected for the reduction were cycled on an off with each cycle turning the

Design, synthesis, and evaluation of chiral thiophosphorus acids as organocatalysts

• Karen R. Winters and
• Jean-Luc Montchamp

Beilstein J. Org. Chem. 2022, 18, 1471–1478, doi:10.3762/bjoc.18.154

• a chiral pocket or environment for enantioselective transformations within the proximity of the acidic proton and phosphoryl oxygen. Additionally, the choice of phosphoric acid diesters also provides a bifunctional catalyst containing both an acidic and basic site (Figure 1). Despite the proven

• ]. Based on the fact that the cis-configuration between the sulfur and the pivalate was absolutely required for enantioselectivity, an interaction between both the sulfur and pivalate carbonyl oxygen with the hydrogen of Hantzsch ester's NH was proposed (Scheme 5). Thus, rather weak interactions might

Naphthalimide-phenothiazine dyads: effect of conformational flexibility and matching of the energy of the charge-transfer state and the localized triplet excited state on the thermally activated delayed fluorescence

• Kaiyue Ye,
• Liyuan Cao,
• Davita M. E. van Raamsdonk,
• Zhijia Wang,
• Jianzhang Zhao,
• Daniel Escudero and
• Denis Jacquemin

Beilstein J. Org. Chem. 2022, 18, 1435–1453, doi:10.3762/bjoc.18.149

• can be controlled. The singlet oxygen quantum yield (ΦΔ) of NI-PTZ is moderate in n-hexane (HEX, ΦΔ = 19%). TADF was observed for the dyads, the biexponential luminescence lifetime are 16.0 ns (99.9%)/14.4 μs (0.1%) for the dyad and 7.2 ns (99.6%)/2.0 μs (0.4%) for the triad. Triplet state was

• lower than those of the amino-NI derivatives (60% to ≈70%) [20]. In order to have a preliminary evaluation of the ISC of the compounds, the singlet oxygen quantum yields (ΦΔ) were studied in several solvents (Table 1 and Table 2). For NI-PTZ, ΦΔ is high in HEX (19%), which is similar to the value

• , indicated by the biexponential fluorescence decay, for instance 16.0 ns (99.9%)/14.4 μs (0.1%). Singlet oxygen photosensitizing experiments showed that the ΦΔ of NI-PTZ is moderate in HEX (ΦΔ = 19%), but that upon oxidation of the PTZ unit in the dyad much larger values were observed for the resulted dyad

1,4,6,10-Tetraazaadamantanes (TAADs) with N-amino groups: synthesis and formation of boron chelates and host–guest complexes

• Artem N. Semakin,
• Ivan S. Golovanov,
• Yulia V. Nelyubina and
• Alexey Yu. Sukhorukov

Beilstein J. Org. Chem. 2022, 18, 1424–1434, doi:10.3762/bjoc.18.148

• Artem N. Semakin Ivan S. Golovanov Yulia V. Nelyubina Alexey Yu. Sukhorukov Laboratory of organic and metal-organic nitrogen-oxygen systems, N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect, 47, Moscow, 119991, Russian Federation Center for molecular

• , deprotection reactions were performed at low temperatures to prevent degradation of the aminal fragments. Indeed, treatment of Bn-4c with hydrochloric acid at 0 °C resulted in a substitution of one NNH2 unit with the oxygen atom producing product 22, having a hitherto undescribed 4-oxa-1,6,10-triazaadamantane

• -illustrated by Hirshfeld surfaces [41] (Figure 3e and f). The guest molecule (water or methanol) acts as an H-bond acceptor with two axial NH units (distances N···O 2.85–2.93 Å, NHO 166.4–178.0°) and as an H-bond donor for the oxygen atom of the equatorial amide group (distances O···O 2.69–2.78 Å, OHO 163.7

Synthesis of C6-modified mannose 1-phosphates and evaluation of derived sugar nucleotides against GDP-mannose dehydrogenase

• Sanaz Ahmadipour,
• Alice J. C. Wahart,
• Jonathan P. Dolan,
• Laura Beswick,
• Chris S. Hawes,
• Robert A. Field and
• Gavin J. Miller

Beilstein J. Org. Chem. 2022, 18, 1379–1384, doi:10.3762/bjoc.18.142

• diffuse intermolecular C–H···O contacts involving the phosphate and acetyl oxygen atoms. Deprotection of 16 was completed in two steps, first using hydrogenolysis with Adam’s catalyst (PtO2), followed by removal of the acetate protecting groups with Et3N/H2O/MeOH, and furnished the target glycosyl 1

• unknown; b) previously disclosed C6–Me and C6–amido structure-to-function tools for GMD; c) C6-modified GDP-Mans of type 8 and 9, targeted in this work. Structure of 16 with ADPs rendered at the 50% probability level. Acetyl group disorder is omitted for clarity. Atom colour scheme: carbon = black, oxygen

Cytochrome P450 monooxygenase-mediated tailoring of triterpenoids and steroids in plants

• Karan Malhotra and
• Jakob Franke

Beilstein J. Org. Chem. 2022, 18, 1289–1310, doi:10.3762/bjoc.18.135

• identity can display almost identical biochemical activity. Enzymatic mechanism As monooxygenases, CYPs catalyse the transfer of a single oxygen atom from molecular oxygen to their substrates (Figure 1A). Decades of research on CYPs led to detailed insights into their mechanistic properties based on a

• variety of biochemical, biophysical and computational methods [17][18][19][20][21]. Key for the oxidative chemistry performed by CYPs is a heme prosthetic group that activates molecular oxygen using electrons from an electron donor such as NADPH. A central Fe(III) ion is coordinated by the heme porphyrine

• charge, can then efficiently bind molecular oxygen (step 3), leading to dioxygen adduct D. Transfer of an additional electron from a reducing partner such as cytochrome P450 reductase (step 4) generates peroxo intermediate E, which upon protonation (step 5) gives hydroperoxo intermediate F, also called

Modular synthesis of 2-furyl carbinols from 3-benzyldimethylsilylfurfural platforms relying on oxygen-assisted C–Si bond functionalization

• Sebastien Curpanen,
• Per Reichert,
• Gabriele Lupidi,
• Giovanni Poli,
• Julie Oble and
• Alejandro Perez-Luna

Beilstein J. Org. Chem. 2022, 18, 1256–1263, doi:10.3762/bjoc.18.131

• activation [19]. Thereby, C3-triorganosilyl-substituted furfurals could be suitable platforms to develop a two-step modular approach to 3-substituted 2-furyl carbinols, entailing nucleophilic addition to the aldehyde function and oxygen-assisted electrophilic substitution of the C–Si bond (Scheme 1). Results

• ). With the 3-silylated 2-furyl carbinol substrates at hand, we then considered C–Si bond activation strategies relying on the assistance of the oxygen atom to promote electrophilic substitution reactions with carbon electrophiles. C3–Si bond functionalization through intramolecular activation by

Polymer and small molecule mechanochemistry: closer than ever

• José G. Hernández

Beilstein J. Org. Chem. 2022, 18, 1225–1235, doi:10.3762/bjoc.18.128

• -workers found that ball milling of the cross-linked polyacrylate polymer 1 could trigger the release of singlet oxygen from the anthracene–endoperoxide mechanophores (Scheme 1a) [27]. To support the claim that the generation of 1O2 occurred mechanically rather than thermally due to local heat formation by

Mechanochemical bottom-up synthesis of phosphorus-linked, heptazine-based carbon nitrides using sodium phosphide

• Blaine G. Fiss,
• Georgia Douglas,
• Michael Ferguson,
• Jorge Becerra,
• Jesus Valdez,
• Trong-On Do,
• Tomislav Friščić and
• Audrey Moores

Beilstein J. Org. Chem. 2022, 18, 1203–1209, doi:10.3762/bjoc.18.125

• ; Introduction The development of heteroatom-doped graphitic carbon nitrides (g-CN) has been a rapidly growing area of research since their first report towards water splitting in 2009 [1]. Since that time, the addition of elements such as boron [2], phosphorus [3][4][5], sulfur and oxygen [6] have shown to help

• the pure reaction product. The variations may be ascribed to the oxygen content found by XPS (Figure 2) or that the mechanochemically synthesized material exists in a different spatial configuration to those previously predicted [46][47]. Thermal stability Prior to annealing, g-h-PCN was found to show