gem-Difluorovinyl and trifluorovinyl Michael acceptors in the synthesis of α,β-unsaturated fluorinated and nonfluorinated amides

• Monika Bilska-Markowska,
• Marcin Kaźmierczak,
• Wojciech Jankowski and
• Marcin Hoffmann

Beilstein J. Org. Chem. 2024, 20, 2946–2953, doi:10.3762/bjoc.20.247

• acceptors [13][14][15][16][17]. The Michael addition with fluorinated acceptors finds application in the synthesis of, among others, fluorinated amino acids, which can be a structural motif in many biologically active compounds [18]. There are also known studies on the incorporation of highly reactive

Trifluoromethylated hydrazones and acylhydrazones as potent nitrogen-containing fluorinated building blocks

• Zhang Dongxu

Beilstein J. Org. Chem. 2023, 19, 1741–1754, doi:10.3762/bjoc.19.127

• acid-catalyzed hydrocyanation of trifluoromethylated acylhydrazones, in which the product was the precursor for the preparation of chiral fluorinated amino acids [104] (Scheme 17a). Meanwhile, Hu et al. provided a novel and efficient process for the synthesis of polysubstituted 3-trifluoromethyl-1,2,4

Biochemistry of fluoroprolines: the prospect of making fluorine a bioelement

• Vladimir Kubyshkin,
• Rebecca Davis and
• Nediljko Budisa

Beilstein J. Org. Chem. 2021, 17, 439–460, doi:10.3762/bjoc.17.40

• a common conception that structure and stability experience the same trends. The less the structure is preserved, the less stable the folding of the protein is, and vice versa. However, in proteins with fluorinated amino acids, structure and stability do not necessarily correlate, as demonstrated by

• expression of proteins and enzymes of interest by circumventing translational issues. The final aspect of the protein chemistry is protein degradation. Aliphatic fluorinated amino acids have been utilized towards an enhanced proteolytic stability of peptides [144]. The information regarding the impact of

¹⁹F NMR as a tool in chemical biology

• Diana Gimenez,
• Aoife Phelan,
• Cormac D. Murphy and
• Steven L. Cobb

Beilstein J. Org. Chem. 2021, 17, 293–318, doi:10.3762/bjoc.17.28

• combined with the aforementioned chemical approaches based on cysteine and lysine modification. It is worth noting that for small proteins and peptides the chemical incorporation of the desired fluorinated amino acids using SPPS protocols still remains the method of choice, as it enables the site-specific

• symmetric homodimers. By labelling NS1A with 5-FTrp at the different sites within the ED, Aramini et al. were able to demonstrate that a specific labelled residue, 5-FTrp187, exhibited indeed a higher degree of 19F NMR line width broadening when compared to the other fluorinated amino acids incorporated

Polarity effects in 4-fluoro- and 4-(trifluoromethyl)prolines

• Vladimir Kubyshkin

Beilstein J. Org. Chem. 2020, 16, 1837–1852, doi:10.3762/bjoc.16.151

• ], organocatalysis [102], drug discovery [103] and more. A) Three types of the backbone amino acid structures that are included in protein translation: glycine, alanine, and the set of its structural derivatives, proline. B) The portfolio of the fluorinated amino acids developed to date. The set of amino acids

Fluorinated phenylalanines: synthesis and pharmaceutical applications

• Laila F. Awad and
• Mohammed Salah Ayoup

Beilstein J. Org. Chem. 2020, 16, 1022–1050, doi:10.3762/bjoc.16.91

• , geometry, conformation, reactivity, and moreover the bioavailability of the analogue [1]. Fluorinated amino acids (FAAs) have considerable industrial and pharmaceutical potential [2]. Also, they have played an important role as enzyme inhibitors as well as therapeutic agents [3][4]. Moreover, they modulate

• stability [5]. Also fluorinated aromatic amino acids can destabilize ΙΙ-cation interactions whereas their increased hydrophobicity enhances binding affinity [19]. Moreover, the incorporation of fluorinated amino acids into proteins provides the opportunity for probing structure (by NMR techniques) including

• proteasome inhibitors. The fluorinated amino acids 77a and 77b were used mainly for two reasons, i.e., the ready availability and hydrophobicity [55]. Further, (S)-pentafluorophenylalanine (Pff, 77a) was used to stabilize proteins for potential applications in various protein-based biotechnologies. To

Position-dependent impact of hexafluoroleucine and trifluoroisoleucine on protease digestion

• Susanne Huhmann,
• Anne-Katrin Stegemann,
• Kristin Folmert,
• Damian Klemczak,
• Johann Moschner,
• Michelle Kube and
• Beate Koksch

Beilstein J. Org. Chem. 2017, 13, 2869–2882, doi:10.3762/bjoc.13.279

• of peptides as therapeutics. One strategy to increase the proteolytic stability of peptides is the modification with fluorinated amino acids. This study presents a systematic investigation of the effects of fluorinated leucine and isoleucine derivatives on the proteolytic stability of a peptide that

• this study when positioned N-terminal to the cleavage site. These results provide valuable information for the application of fluorinated amino acids in the design of proteolytically stable peptide-based pharmaceuticals. Keywords: fluorinated amino acids; hexafluoroleucine; peptide drugs; protease

• form of fluorinated amino acids, this unique element can alter the biophysical, chemical and pharmaceutical properties of proteins and peptides including their interaction with proteases [9][10]. Several laboratories have focused on introducing highly fluorinated analogues of hydrophobic amino acids

The use of 4,4,4-trifluorothreonine to stabilize extended peptide structures and mimic β-strands

• Yaochun Xu,
• Isabelle Correia,
• Tap Ha-Duong,
• Nadjib Kihal,
• Jean-Louis Soulier,
• Julia Kaffy,
• Benoît Crousse,
• Olivier Lequin and
• Sandrine Ongeri

Beilstein J. Org. Chem. 2017, 13, 2842–2853, doi:10.3762/bjoc.13.276

• activity [3][4]. Fluorinated amino acids can also be used as powerful 19F NMR probes for the study of protein–ligand interactions and enzymatic activities [5][6][7][8]. However, the development of fluorinated peptides as drug candidates seems to be largely under-exploited. Investigation on the influence of

Homologated amino acids with three vicinal fluorines positioned along the backbone: development of a stereoselective synthesis

• Raju Cheerlavancha,
• Ahmed Ahmed,
• Yun Cheuk Leung,
• Aggie Lawer,
• Qing-Quan Liu,
• Marina Cagnes,
• Hee-Chan Jang,
• Xiang-Guo Hu and
• Luke Hunter

Beilstein J. Org. Chem. 2017, 13, 2316–2325, doi:10.3762/bjoc.13.228

• progression in the study of fluorinated amino acids develops into the concept of α,β,γ-trifluoro-δ-amino acids (e.g., 6, Figure 1). δ-Amino acids such as 6 are of special interest because they have the same backbone length as a dipeptide of α-amino acids, and thus may potentially be substituted for a two

Synthesis of enantiomerically pure (2S,3S)-5,5,5-trifluoroisoleucine and (2R,3S)-5,5,5-trifluoro-allo-isoleucine

• Holger Erdbrink,
• Elisabeth K. Nyakatura,
• Susanne Huhmann,
• Ulla I. M. Gerling,
• Dieter Lentz,
• Beate Koksch and
• Constantin Czekelius

Beilstein J. Org. Chem. 2013, 9, 2009–2014, doi:10.3762/bjoc.9.236

• der Waals volume versus their retention time from an RP-HPLC experiment, we previously investigated the relationship between size and hydrophobicity of various fluorinated and non-fluorinated amino acids [26]. In this experiment the non-polar phase of a reversed-phase column serves as a mimic of a

• increase in hydrophobicity. In agreement with previous studies that focused on other fluorinated amino acids [26], also the retention times of 5-F3Ile and 4’-F3Ile do not fit into the correlation between side chain volume and retention time (Figure 1). Although similar in size, the two fluorinated

• findings, suggests that there are two factors determining the overall hydrophobicity of fluorinated amino acids [26]. On one hand, substitutions of hydrogen by fluorine increase the solvent accessible surface area and thus lead to an increase in hydration energy. On the other hand, the C–F bond is more

Efficient regio- and stereoselective access to novel fluorinated β-aminocyclohexanecarboxylates

• Loránd Kiss,
• Melinda Nonn,
• Reijo Sillanpää,
• Santos Fustero and
• Ferenc Fülöp

Beilstein J. Org. Chem. 2013, 9, 1164–1169, doi:10.3762/bjoc.9.130

• considerable impact in drug discovery. There is currently extensive research activity in synthetic chemistry for the preparation of various biologically active fluorinated products [1][2][3][4][5][6][7][8][9][10]. Of special interest among such materials are the fluorinated amino acids, which in most cases

• appreciable in the case of peptide oligomers formed from conformationally restricted fluorinated amino acids. Although cyclic β-amino acids are of major interest in pharmaceutical chemistry and in peptide research [36][37][38][39][40][41][42][43][44][45][46][47][48][49][50][51][52][53][54][55][56][57][58][59

Novel synthesis of pseudopeptides bearing a difluoromethyl group by Ugi reaction and desulfanylation

• Jingjing Wu,
• Hui Li and
• Song Cao

Beilstein J. Org. Chem. 2011, 7, 1070–1074, doi:10.3762/bjoc.7.123

• cleavage; Ugi reaction; Introduction Fluorinated amino acids and pseudopeptides have increasingly attracted attention in recent years [1][2][3][4][5]. The selective incorporation of fluorine-containing groups, such as trifluoromethyl, difluoromethyl and difluoromethylene, into peptides or peptidomimetics

Chemical aminoacylation of tRNAs with fluorinated amino acids for in vitro protein mutagenesis

• Shijie Ye,
• Allison Ann Berger,
• Dominique Petzold,
• Oliver Reimann,
• Benjamin Matt and
• Beate Koksch

Beilstein J. Org. Chem. 2010, 6, No. 40, doi:10.3762/bjoc.6.40

• used to synthesize biologically relevant proteins which contain fluorinated amino acids at specific sites by means of a cell-free translation system. Such engineered proteins are expected to contribute to our understanding of discrete fluorines’ interaction with canonical amino acids in a native

• protein environment and to enable the design of fluorinated proteins with arbitrary desired properties. Keywords: chemical aminoacylation; DfeGly; fluorinated amino acids; site-specific protein mutagenesis; TfeGly; TfmAla; Introduction Over the past two decades, the interest in engineering proteins

The C–F bond as a conformational tool in organic and biological chemistry

• Luke Hunter

Beilstein J. Org. Chem. 2010, 6, No. 38, doi:10.3762/bjoc.6.38

• -symmetrical amino acids containing two or more vicinal fluorine atoms. Such fluorinated amino acids could be useful building blocks for the synthesis of shape-controlled bioactive pseudopeptides. Studies towards this goal are underway in the author’s laboratory, and details of these investigations will be