Acyclic cucurbit[n]uril bearing alkyl sulfate ionic groups

• Christian Akakpo,
• Peter Y. Zavalij and
• Lyle Isaacs

Beilstein J. Org. Chem. 2025, 21, 717–726, doi:10.3762/bjoc.21.55

• , two aromatic o-xylylene walls, and four sulfonates as solubilizing ionic groups. In accord with these structural features, M1 binds a variety of hydrophobic and cationic guest molecules by the hydrophobic effect, π–π interactions, and electrostatic (ion–dipole and ion–ion) interactions. Although

Binding of tryptophan and tryptophan-containing peptides in water by a glucose naphtho crown ether

• Gianpaolo Gallo and
• Bartosz Lewandowski

Beilstein J. Org. Chem. 2025, 21, 541–546, doi:10.3762/bjoc.21.42

• the host as well as Coulombic interactions between the crown ether and the ammonium could be involved. Furthermore, the ITC measurements revealed that the binding of 1 with both enantiomers of H-Trp-OH is predominantly entropy-driven suggesting that the hydrophobic effect plays an important role in

• extent. The receptor could instead potentially form H-bonds via its OH functionalities with the amide groups adjacent to the Trp residue in the peptide. The favourable negative entropy of the interaction between 1 and the tripeptides 2–7 suggests a significant contribution of the hydrophobic effect to

Beyond symmetric self-assembly and effective molarity: unlocking functional enzyme mimics with robust organic cages

• Keith G. Andrews

Beilstein J. Org. Chem. 2025, 21, 421–443, doi:10.3762/bjoc.21.30

• concentration. As for the macrocycles discussed above, dual confinement/encapsulation [36] and the hydrophobic effect dominate the origin of catalytic rate enhancements [158][159]. To avoid product inhibition, model reactions that increase molecularity (A → B + C) or that generate weakly interacting or less

Applications of microscopy and small angle scattering techniques for the characterisation of supramolecular gels

• Connor R. M. MacDonald and
• Emily R. Draper

Beilstein J. Org. Chem. 2024, 20, 2608–2634, doi:10.3762/bjoc.20.220

• may be assumed to provide an in situ environment. While D2O is chemically identical to H2O, it does exhibit differences in properties including density, viscosity, hydrogen-bond strength, a more pronounced hydrophobic effect. As hydrogen bonding and hydrophobicity are critical to hydrogel

Facile access to pyridinium-based bent aromatic amphiphiles: nonionic surface modification of nanocarbons in water

• Lorenzo Catti,
• Shinji Aoyama and
• Michito Yoshizawa

Beilstein J. Org. Chem. 2024, 20, 32–40, doi:10.3762/bjoc.20.5

• similar to AA [12][13], indicating self-assembly via the hydrophobic effect and π-stacking interactions (Figure 3a,b). The self-assembly in water was further supported by UV–visible analysis, displaying slight red-shifts of the anthracene absorption bands relative to the spectrum in methanol (Δλmax = +3

• materials. Conclusion We have developed new pyridinium-based bent amphiphiles PA-R that can be facilely accessed from simple yet novel building block 3,5-dianthrylpyridine in 1–3 steps. The amphiphiles quantitatively self-assembled into ≈2 nm-sized aromatic micelles (PA-R)n via the hydrophobic effect and π

pH-Responsive fluorescent supramolecular nanoparticles based on tetraphenylethylene-labelled chitosan and a six-fold carboxylated tribenzotriquinacene

• Nan Yang,
• Yi-Yan Zhu,
• Wei-Xiu Lin,
• Yi-Long Lu and
• Wen-Rong Xu

Beilstein J. Org. Chem. 2023, 19, 635–645, doi:10.3762/bjoc.19.45

• water. The anionic bowl-shaped tribenzotriquinacene derivative TBTQ-C6 was incorporated into the polycationic CS-TPE to form electrostatically induced host–guest supra-amphiphiles, which further self-assembled into supramolecular nanoparticles in aqueous medium driven by the hydrophobic effect. As

Study on the interactions between melamine-cored Schiff bases with cucurbit[n]urils of different sizes and its application in detecting silver ions

• Jun-Xian Gou,
• Yang Luo,
• Xi-Nan Yang,
• Wei Zhang,
• Ji-Hong Lu,
• Zhu Tao and
• Xin Xiao

Beilstein J. Org. Chem. 2021, 17, 2950–2958, doi:10.3762/bjoc.17.204

• redshifts in the presence of Q[7] (Figure 3), which is mainly due to the π–π* and n–π* transition caused by the hydrophobic effect of the Q[7] cavity. Meanwhile, the absorbance of TBT is gradually approaching the saturation state, when the amount of Q[7] reaches 3 times that of TBT. Therefore, it can be

Constrained thermoresponsive polymers – new insights into fundamentals and applications

• Patricia Flemming,
• Alexander S. Münch,
• Andreas Fery and
• Petra Uhlmann

Beilstein J. Org. Chem. 2021, 17, 2123–2163, doi:10.3762/bjoc.17.138

• for ∆mH and, due to the ordered hydration structures, to a negative entropy of mixing. As soon as the turbidity temperature is reached, the hydrophobic effect becomes dominant and water molecules are released, leading to a collapse of the hydration shell and a significant increase in entropy. The

Beyond ribose and phosphate: Selected nucleic acid modifications for structure–function investigations and therapeutic applications

• Christopher Liczner,
• Kieran Duke,
• Gabrielle Juneau,
• Martin Egli and
• Christopher J. Wilds

Beilstein J. Org. Chem. 2021, 17, 908–931, doi:10.3762/bjoc.17.76

• at the PS2 nucleotide sites of an siRNA duplex sense strand increase the thermal stability of the duplex to levels comparable to the unmodified variant, it also further improved the binding affinity to the Ago2 protein, hypothesized to be in part caused by a superior hydrophobic effect [92]. Glycol

Multiswitchable photoacid–hydroxyflavylium–polyelectrolyte nano-assemblies

• Alexander Zika and
• Franziska Gröhn

Beilstein J. Org. Chem. 2021, 17, 166–185, doi:10.3762/bjoc.17.17

• = 0.5, l = 0.75, and l = 0.9. This difference corresponds to the ITC. The loading ratios 0.5 ≤ l ≤ 0.9 lie in the range of the second binding step that is driven by the hydrophobic effect, whereas the loading ratio l = 0.25 is in the range of the third binding step where enthalpic interactions dominate

Molecular basis for protein–protein interactions

• Brandon Charles Seychell and
• Tobias Beck

Beilstein J. Org. Chem. 2021, 17, 1–10, doi:10.3762/bjoc.17.1

• interface. Due to this shift, the interface amino acids experience either a significant desolvation energy, where there is a disruption in the residue charge–water interaction, resulting in water exclusion, and thus a hydrophobic effect [50], or an interaction in the complex formation. An example of the pH

Synthesis and investigation of quadruplex-DNA-binding, 9-O-substituted berberine derivatives

• Jonas Becher,
• Daria V. Berdnikova,
• Heiko Ihmels and
• Christopher Stremmel

Beilstein J. Org. Chem. 2020, 16, 2795–2806, doi:10.3762/bjoc.16.230

• additional hydrophobic effect is the main contribution of the different substituents of 4a–e to the overall binding affinity. It is well known that the emission of the parent berberine increases strongly upon the accommodation in sterically constrained binding sites in, e.g., nucleic acids, cucurbiturils

Water-soluble host–guest complexes between fullerenes and a sugar-functionalized tribenzotriquinacene assembling to microspheres

• Si-Yuan Liu,
• Xin-Rui Wang,
• Man-Ping Li,
• Wen-Rong Xu and
• Dietmar Kuck

Beilstein J. Org. Chem. 2020, 16, 2551–2561, doi:10.3762/bjoc.16.207

• hydrophobic effect and to host–guest π–π interactions. Hydrophobic surface simulations showed that TBTQ-(OG)6 and C60 forms an amphiphilic supramolecular host–guest complex, which further assembles to microspheres with diameters of 0.3–3.5 μm, as determined by scanning electron microscopy. Keywords

• is reproduced in Figure 6c. It is evident that TBTQ-(OG)6 provides a strongly hydrophobic region at the inner bottom. Thus, the hydrophobic effect is assumed to be an important driving force for the formation of the complex TBTQ-(OG)6 C60. Surface morphologies. The surface morphologies of C60, TBTQ

Host–guest interaction of cucurbit[8]uril with oroxin A and its effect on the properties of oroxin A

• Zhishu Zeng,
• Jun Xie,
• Guangyan Luo,
• Zhu Tao and
• Qianjun Zhang

Beilstein J. Org. Chem. 2020, 16, 2332–2337, doi:10.3762/bjoc.16.194

• involve three main intermolecular forces: a hydrophobic effect, hydrogen bonding and ion–dipole interactions at the carbonyl portals [7][8][9]. The high thermal stability [10], ease of synthesis [11], general absence of cytotoxicity or toxicity [12][13] and their good molecular recognition and binding

Naphthalene diimide bis-guanidinio-carbonyl-pyrrole as a pH-switchable threading DNA intercalator

• Poulami Jana,
• Filip Šupljika,
• Carsten Schmuck and
• Ivo Piantanida

Beilstein J. Org. Chem. 2020, 16, 2201–2211, doi:10.3762/bjoc.16.185

• pronounced aggregation, which could be attributed to the electrostatic interactions of the highly positively charged molecules along the negatively charged DNA/RNA backbone aided by the strong hydrophobic effect of the central NDI core. This effect yielded a marked ds-DNA condensation ability of compound 4

Complexation of chiral amines by resorcin[4]arene sulfonic acids in polar media – circular dichroism and diffusion studies of chirality transfer and solvent dependence

• Bartosz Setner and
• Agnieszka Szumna

Beilstein J. Org. Chem. 2019, 15, 1913–1924, doi:10.3762/bjoc.15.187

• a hydrophobic effect, while the other one has a more directional character, or application of multidentate interaction sites [3]. Macrocyclic compounds with persistent hydrophobic cavities constitute a fundamental class of scaffolds for the construction of supramolecular host–guest complexes in

Synthesis of a [6]rotaxane with singly threaded γ-cyclodextrins as a single stereoisomer

• Jason Yin Hei Man and
• Ho Yu Au-Yeung

Beilstein J. Org. Chem. 2019, 15, 1829–1837, doi:10.3762/bjoc.15.177

• further interlocking at the γ-CD. Results and Discussion Building block design and rotaxane synthesis To encourage complex formation with γ-CD, axle 1 was designed with a biphenylene core to bind to the macrocycle through hydrophobic effect. The axle is terminated by 2-aminoethyl azide for CB[6]-mediated

• . Although the hydrophobic biphenylene is expected to form a more stable inclusion complex with γ-CD due to a stronger hydrophobic effect, a structure with the γ-CD interlocking at the central biphenylene of 4R may not explain the non-equivalent chemical environments of the two termini. As discussed in the

Host–guest interactions in nor-seco-cucurbit[10]uril: novel guest-dependent molecular recognition and stereoisomerism

• Xiaodong Zhang,
• Wei Wu,
• Zhu Tao and
• Xin-Long Ni

Beilstein J. Org. Chem. 2019, 15, 1705–1711, doi:10.3762/bjoc.15.166

• hydrophobic effect of Q[n]s, and the classical hydrophobic effect of the guest [31][32][33]. The desolvation of the Q[n] host cavity delivers high-energy water trapped in the cavity; as it has a favorable enthalpic signature, this is a nonclassical hydrophobic effect. Contrary to that, the desolvation of the

• guest molecules is a classical hydrophobic effect; it has a favorable entropic component due to the delivery of surface-bound solvent molecules on the guest. Therefore, isothermal titration calorimetry could be employed to quantify the enthalpic and entropic contributions to the binding interactions

• of G2·host-2 are derived not only from the ion–dipole interactions between the host and guest, but also in the assistant of the hydrophobic effect. Notably, the entropic gain achieved with the G2·host-2 system was higher than that obtained with other host–guest systems, indicating that the large

Reversible end-to-end assembly of selectively functionalized gold nanorods by light-responsive arylazopyrazole–cyclodextrin interaction

• Maximilian Niehues,
• Patricia Tegeder and
• Bart Jan Ravoo

Beilstein J. Org. Chem. 2019, 15, 1407–1415, doi:10.3762/bjoc.15.140

• increase the solubility of CTAB and destabilize its double layer. Furthermore, ethanol weakens the hydrophobic effect of the solvent so that the inclusion of CTAB into β-CD is suppressed. The ligand exchange was followed by ζ-potential measurements giving direct information about the surface charge

Complexation of a guanidinium-modified calixarene with diverse dyes and investigation of the corresponding photophysical response

• Yu-Ying Wang,
• Yong Kong,
• Zhe Zheng,
• Wen-Chao Geng,
• Zi-Yi Zhao,
• Hongwei Sun and
• Dong-Sheng Guo

Beilstein J. Org. Chem. 2019, 15, 1394–1406, doi:10.3762/bjoc.15.139

• complex forms indeed, but the corresponding luminescence remains nearly unaltered. On one hand, Ru(dcbpy)3 is too large to be included into the cavity of GC5A, so the luminescence alternation by a hydrophobic effect could be excluded. On the other hand, Ru(dcbpy)3 locates at the upper rim of GC5A via salt

Molecular recognition using tetralactam macrocycles with parallel aromatic sidewalls

• Dong-Hao Li and
• Bradley D. Smith

Beilstein J. Org. Chem. 2019, 15, 1086–1095, doi:10.3762/bjoc.15.105

• of polar functional groups and non-polar surfaces which is reminiscent of the amphiphilic binding pockets within many proteins. In water, the aromatic surfaces in the tetralactam cavity drive high affinity due the hydrophobic effect and the NH groups provide secondary interactions that induce binding

• the structure of an effective macrocyclic host must include polar functional groups. In water, association is often driven by the hydrophobic effect which means the interior cavity of an effective macrocyclic host should have sections with non-polar surfaces [3]. A macrocyclic host molecule with an

• have found that squaraine affinities for tetralactam B are in the relative order of methanol < chloroform < water, reflecting the relatively large thermodynamic importance of the hydrophobic effect [60]. Interestingly, isothermal titration calorimetry studies revealed that the high squaraine binding in

Fabrication, characterization and adsorption properties of cucurbit[7]uril-functionalized polycaprolactone electrospun nanofibrous membranes

• Changzhong Chen,
• Fengbo Liu,
• Xiongzhi Zhang,
• Zhiyong Zhao and
• Simin Liu

Beilstein J. Org. Chem. 2019, 15, 992–999, doi:10.3762/bjoc.15.97

• adsorption capacity for MB should be mainly ascribed to the weak binding between CB[7] and MB in ethanol, as in non-aqueous solvents the hydrophobic effect is tremendously weakened. Another possible reason is that the portals of CB[7] are blocked by the PCL chains, which doesn’t allow MB to enter the cavity

Mechanochemistry of supramolecules

• Anima Bose and
• Prasenjit Mal

Beilstein J. Org. Chem. 2019, 15, 881–900, doi:10.3762/bjoc.15.86

• chemistry reactions, as it relies on soft force [97][98] or non-covalent interactions [2] such as hydrogen bonding [99], cation–π [100][101][102], anion–π [103], hydrophobic effect [104][105], halogen bonding [106][107][108][109], etc. As enzymes are structurally complex entities and are difficult to modify

Aqueous olefin metathesis: recent developments and applications

• Valerio Sabatino and
• Thomas R. Ward

Beilstein J. Org. Chem. 2019, 15, 445–468, doi:10.3762/bjoc.15.39

• -II (77% conversion in MeOH/H2O 1:3 and 29% conversion in MeOH/H2O 3:1). The drastic loss of activity can be traced back to the better activity of G-II under aqueous-emulsion conditions and the poor solubility of G-II in MeOH. These results suggest how important the role of the hydrophobic effect is

LCST phase behavior of benzo-21-crown-7 with different alkyl chains

• Yan Deng,
• Xing Li,
• Qiao Zhang,
• Zheng Luo,
• Chengyou Han and
• Shengyi Dong

Beilstein J. Org. Chem. 2019, 15, 437–444, doi:10.3762/bjoc.15.38

• solubility. When the alkyl chains contain seven CH2 units, the crown ethers become poorly soluble in water (the solubility is lower than 0.5 mg/mL for 3e), indicating the hydrophobic effect of long alkyl chains. The nature of the linker unit is also closely related to the water solubility: in general, crown