Cyclodextrin-based rotaxanes for polymer materials: challenge on simultaneous realization of inexpensive production and defined structures

• Yosuke Akae

Beilstein J. Org. Chem. 2024, 20, 3026–3049, doi:10.3762/bjoc.20.252

• . Moreover, owing to the interaction between the narrower rim side of PMα-CD and the amino groups on the axle ends, the [3]rotaxane- or [4]rotaxane-species-contained PMα-CDs directed their narrower rim sides to the axle ends, as confirmed by theoretical calculations, thus indicating that such relatively weak

• interactions could fix the rotaxane structure. Such a fundamental systematic study was first possible because of the efficient urea end-capping synthetic method that supported its utility. Notably, other types of rotaxane frameworks have been developed using the pseudo[3]rotaxane-formation or urea end-capping

Synthesis and conformational analysis of pyran inter-halide analogues of ᴅ-talose

• Olivier Lessard,
• Mathilde Grosset-Magagne,
• Paul A. Johnson and
• Denis Giguère

Beilstein J. Org. Chem. 2024, 20, 2442–2454, doi:10.3762/bjoc.20.208

• , this study should be of general interest in the understanding of weak interactions that are now important to so many areas of chemistry, such as crystal engineering and supramolecular chemistry. Synthesis of trihalogenated pyrans: a) Chiron approach to multivicinal inter-halide derived from

Synthesis and reactivity of azole-based iodazinium salts

• Thomas J. Kuczmera,
• Annalena Dietz,
• Andreas Boelke and
• Boris J. Nachtsheim

Beilstein J. Org. Chem. 2023, 19, 317–324, doi:10.3762/bjoc.19.27

• weak interactions with one of the triflates (I1–O3: 3.354 Å, I1–O5, 3.078 Å). We finally investigated the further reactivity of the synthesized azoiodazinium salts to elaborate their potential as synthetic building blocks (Scheme 1). Treatment of 5aa with Ac2O led to a non-selective ring opening at

Design, synthesis, and evaluation of chiral thiophosphorus acids as organocatalysts

• Karen R. Winters and
• Jean-Luc Montchamp

Beilstein J. Org. Chem. 2022, 18, 1471–1478, doi:10.3762/bjoc.18.154

• ]. Based on the fact that the cis-configuration between the sulfur and the pivalate was absolutely required for enantioselectivity, an interaction between both the sulfur and pivalate carbonyl oxygen with the hydrogen of Hantzsch ester's NH was proposed (Scheme 5). Thus, rather weak interactions might

Synthesis of C6-modified mannose 1-phosphates and evaluation of derived sugar nucleotides against GDP-mannose dehydrogenase

• Sanaz Ahmadipour,
• Alice J. C. Wahart,
• Jonathan P. Dolan,
• Laura Beswick,
• Chris S. Hawes,
• Robert A. Field and
• Gavin J. Miller

Beilstein J. Org. Chem. 2022, 18, 1379–1384, doi:10.3762/bjoc.18.142

• (Figure 2, dotted line). The C···π (mean plane) distance of 3.60 Å corresponded to an H···π distance of ca. 2.6 Å, consistent with the expected values for similar interactions among aryl-substituted monosaccharides [13][14]. The remaining weak interactions in the extended structure largely consist of

Synthesis of a novel aminobenzene-containing hemicucurbituril and its fluorescence spectral properties with ions

• Qingkai Zeng,
• Qiumeng Long,
• Jihong Lu,
• Li Wang,
• Yuting You,
• Xiaoting Yuan,
• Qianjun Zhang,
• Qingmei Ge,
• Hang Cong and
• Mao Liu

Beilstein J. Org. Chem. 2021, 17, 2840–2847, doi:10.3762/bjoc.17.195

• ) × 104 M−1, which was contrary to those of hemicucurbiturils. As observed by fluorescence titration experiments, macrocycle 4 showed weak interactions with selected anions. Results and Discussion Because of the relatively strong nucleophilicity of the amino group in aniline, the synthesis could become

Circularly polarized luminescent systems fabricated by Tröger's base derivatives through two different strategies

• Cheng Qian,
• Yuan Chen,
• Qian Zhao,
• Ming Cheng,
• Chen Lin,
• Juli Jiang and
• Leyong Wang

Beilstein J. Org. Chem. 2021, 17, 52–57, doi:10.3762/bjoc.17.6

• DGG. In the CPL-active co-gels, noncovalent weak interactions might be formed between achiral fluorophores and a chiral gelator. So, the CPL emission of co-gels could be adjusted easily by external stimuli. The ᴅ-glutamic acid gelator DGG and its enantiomer LGG possess three hydrogen-bond sites, two

Molecular basis for protein–protein interactions

• Brandon Charles Seychell and
• Tobias Beck

Beilstein J. Org. Chem. 2021, 17, 1–10, doi:10.3762/bjoc.17.1

• three generalisations [81]. Firstly, errors and kinetic traps are minimised by weak interactions of the assembly units. The weak interactions result in nucleation, the second generalisation, where the initiation of capsid formation is minimised. This in return reduces the kinetic trap. Finally, the

Models of necessity

• Timothy Clark and
• Martin G. Hicks

Beilstein J. Org. Chem. 2020, 16, 1649–1661, doi:10.3762/bjoc.16.137

• molecular aggregation via weak interactions. Paradoxically, exactly such interactions between drug molecules and proteins form much of the basis of classical cheminformatics. These are, however, very specific in nature and have generally been defined in detail for, for instance, scoring functions. Current

A heteroditopic macrocycle as organocatalytic nanoreactor for pyrroloacridinone synthesis in water

• Piyali Sarkar,
• Sayan Sarkar and
• Pradyut Ghosh

Beilstein J. Org. Chem. 2019, 15, 1505–1514, doi:10.3762/bjoc.15.152

• of macrocycles with multiple functional groups has been employed as alternative templates to induce the organic environment for catalysis via multiple weak interactions viz. π–π stacking, hydrogen bonding, etc. [25][26][27][28][29]. At the same time, several efforts have been made to develop

Adhesion, forces and the stability of interfaces

• Robin Guttmann,
• Johannes Hoja,
• Christoph Lechner,
• Reinhard J. Maurer and
• Alexander F. Sax

Beilstein J. Org. Chem. 2019, 15, 106–129, doi:10.3762/bjoc.15.12

• atom positions. Interactions between atoms or small molecules with closed-shell electron configurations having stabilization energies of up to 50 kJ/mol are typical weak interactions. They are smaller by a factor of roughly ten than Coulomb interactions or covalent bonding. It is a characteristic of

• particles but fictitious particles, called quasi-particles. Calculating the energy of the many-body system by summing up the interactions between all real particles is impossible. Weak interactions between quasi-particles can, however, be calculated using conventional techniques, e.g., perturbation methods

• (Green’s functions) or response functions that were obtained by using a special summation of important interactions, for example by using the random phase approximation. The weak interactions not absorbed into quasi-particles are calculated as interactions between quasi-particles. The magnitude of these

Dispersion-mediated steering of organic adsorbates on a precovered silicon surface

• Lisa Pecher,
• Sebastian Schmidt and
• Ralf Tonner

Beilstein J. Org. Chem. 2018, 14, 2715–2721, doi:10.3762/bjoc.14.249

• dynamics (Figure 1). The dominant interaction between molecule and surface changes with the distance: For surface–adsorbate distances at which there is no significant orbital overlap but already rather close contact, dispersion attraction dominates since the numerous rather weak interactions add up to a

Evaluation of dispersion type metal···π arene interaction in arylbismuth compounds – an experimental and theoretical study

• Ana-Maria Preda,
• Małgorzata Krasowska,
• Lydia Wrobel,
• Philipp Kitschke,
• Phil C. Andrews,
• Jonathan G. MacLellan,
• Lutz Mertens,
• Marcus Korb,
• Tobias Rüffer,
• Heinrich Lang,
• Alexander A. Auer and
• Michael Mehring

Beilstein J. Org. Chem. 2018, 14, 2125–2145, doi:10.3762/bjoc.14.187

• Bi···π arene interactions provide an important contribution to the structure formation of arylbismuth compounds. In the absence of stronger donors such as -OR and -Cl, the dispersion type bismuth···π arene interaction is supplemented by other weak interactions such as π···π or C–HPh···π. Each Bi···π

Synthesis of new p-tert-butylcalix[4]arene-based polyammonium triazolyl amphiphiles and their binding with nucleoside phosphates

• Vladimir A. Burilov,
• Guzaliya A. Fatikhova,
• Mariya N. Dokuchaeva,
• Ramil I. Nugmanov,
• Diana A. Mironova,
• Pavel V. Dorovatovskii,
• Victor N. Khrustalev,
• Svetlana E. Solovieva and
• Igor S. Antipin

Beilstein J. Org. Chem. 2018, 14, 1980–1993, doi:10.3762/bjoc.14.173

• spectra in the presence and absence of the guest, respectively. In contrast to ADP and ATP, AMP had no effect on the optical response that can be explained by weak interactions of the monoanionic nucleotide with the di- and tetracationic calixarenes (Figure 3). Obviously, AMP does not effectively interact

What contributes to an effective mannose recognition domain?

• Christoph P. Sager,
• Deniz Eriş,
• Martin Smieško,
• Rachel Hevey and
• Beat Ernst

Beilstein J. Org. Chem. 2017, 13, 2584–2595, doi:10.3762/bjoc.13.255

• generally weak interactions of carbohydrates that bind on the solvent exposed surface of proteins, as compared to those of the majority of marketed drugs that most frequently bind to protein cavities. Additionally, buried and less solvent exposed ligands show slower exchange rates, characterized by a high

• -affinity conformation (Figure 7A), which upon binding to mannose, switches to the medium-affinity conformation (Figure 7B). In this state, weak interactions are beneficial because the bacterium can still easily dissociate (slip-bond behavior) and explore its surroundings for optimal nutrient supply. During

Structural diversity in the host–guest complexes of the antifolate pemetrexed with native cyclodextrins: gas phase, solution and solid state studies

• Magdalena Ceborska,
• Magdalena Zimnicka,
• Aneta Aniela Kowalska,
• Kajetan Dąbrowa and
• Barbara Repeć

Beilstein J. Org. Chem. 2017, 13, 2252–2263, doi:10.3762/bjoc.13.222

• -CD/PTX >> γ-CD/PTX > α-CD/PTX) was derived from MS experiments in the gas phase. Similarly, for the CDs/FA complexes, β-CD produced the most stable complex, whereas α-CD formed the least stable exclusion-type complex. In the case of γ-CD host, for both FA and PTX guests weak interactions were

• between these molecules we have carried out 2D ROESY experiments (1:1 host–guest ratio, see Figure S11, Supporting Information File 1). These experiments suggest very weak interactions between the CD host and the PTX guest. For weak complexes the clearer picture of the associate’s architecture may be

Mechanochemical synthesis of small organic molecules

• Tapas Kumar Achar,
• Anima Bose and
• Prasenjit Mal

Beilstein J. Org. Chem. 2017, 13, 1907–1931, doi:10.3762/bjoc.13.186

• aldehydes having electron-donating or -withdrawing substituents and different N-chloramines were well tolerated for this moderately yielding reaction. They have also reported a method of controlling the chemical reactivity of contact explosives by exploiting weak interactions or soft force [80] during amide

Molecular recognition of N-acetyltryptophan enantiomers by β-cyclodextrin

• Spyros D. Chatziefthimiou,
• Mario Inclán,
• Petros Giastas,
• Athanasios Papakyriakou,
• Konstantina Yannakopoulou and
• Irene M. Mavridis

Beilstein J. Org. Chem. 2017, 13, 1572–1582, doi:10.3762/bjoc.13.157

• - than in L-, while guest-H4–host-H3 interactions are practically absent for both enantiomers, implying that L-H4 is extended further out of the primary side than D-H4. (iv) Guest-H9,9’ and H10 show weak interactions with host-H3 thus they reside mostly closer to the wide opening of the host. The above

Structure–efficiency relationships of cyclodextrin scavengers in the hydrolytic degradation of organophosphorus compounds

• Sophie Letort,
• Michaël Bosco,
• Benedetta Cornelio,
• Frédérique Brégier,
• Sébastien Daulon,
• Géraldine Gouhier and
• François Estour

Beilstein J. Org. Chem. 2017, 13, 417–427, doi:10.3762/bjoc.13.45

• hydrolyze the organophosphorus (OP) compounds under physiological conditions. In this context, cyclodextrins (CD) constitute attractive starting materials because, due to the inclusion properties of their internal cavity, they can form host–guest complexes in aqueous media by weak interactions with small

Molecular weight control in organochromium olefin polymerization catalysis by hemilabile ligand–metal interactions

• Stefan Mark,
• Hubert Wadepohl and
• Markus Enders

Beilstein J. Org. Chem. 2016, 12, 1372–1379, doi:10.3762/bjoc.12.131

• [8][9][10][11][12]. Examples are the switching from polymerization to trimerization selectivity [13] or the suppression of chain termination by weak interactions with fluorine substituents [14][15][16][17]. The interaction with fluorine atoms from fluorinated borate anions have also shown to play a

Interactions of cyclodextrins and their derivatives with toxic organophosphorus compounds

• Sophie Letort,
• Sébastien Balieu,
• William Erb,
• Géraldine Gouhier and
• François Estour

Beilstein J. Org. Chem. 2016, 12, 204–228, doi:10.3762/bjoc.12.23

• phosphorus substituents for the CD cavity. Transformations of NOPs mediated by CDs According to the above mentioned results, CDs provide interesting scaffolds able to bind organophosphorus compounds. The complex stabilization between the substrate and the oligosaccharide relies on weak interactions such as

Synthesis and evaluation of the biostability and cell compatibility of novel conjugates of nucleobase, peptidic epitope, and saccharide

• Dan Yuan,
• Xuewen Du,
• Junfeng Shi,
• Ning Zhou,
• Abdulgader Ahmed Baoum,
• Khalid Omar Al Footy,
• Khadija Omar Badahdah and
• Bing Xu

Beilstein J. Org. Chem. 2015, 11, 1352–1359, doi:10.3762/bjoc.11.145

• slightly increased in the treatment of the mixture of 1 + 8 (about 3% left) with proteinase K, comparing to the case of 8 incubated with proteinase K at 24 h. This result is consistent with TEM investigations showing that there are weak interactions between 1 and 8. Cell compatibility Cell compatibility is

Interactions between tetrathiafulvalene units in dimeric structures – the influence of cyclic cores

• Huixin Jiang,
• Virginia Mazzanti,
• Christian R. Parker,
• Søren Lindbæk Broman,
• Jens Heide Wallberg,
• Karol Lušpai,
• Adam Brincko,
• Henrik G. Kjaergaard,
• Anders Kadziola,
• Peter Rapta,
• Ole Hammerich and
• Mogens Brøndsted Nielsen

Beilstein J. Org. Chem. 2015, 11, 930–948, doi:10.3762/bjoc.11.104

• -ethynylpyridine linkers. When two TTFs are closer together via an ethyne spacer (4), the two waves are rather broad. In fact, a shoulder can be seen for each wave, which indicates weak interactions between the two units, not only for generating two TTF radical cation units, but also for the final generation of

Inclusion of trans-resveratrol in methylated cyclodextrins: synthesis and solid-state structures

• Lee Trollope,
• Dyanne L. Cruickshank,
• Terence Noonan,
• Susan A. Bourne,
• Milena Sorrenti,
• Laura Catenacci and
• Mino R. Caira

Beilstein J. Org. Chem. 2014, 10, 3136–3151, doi:10.3762/bjoc.10.331

• used to calculate KC (up to 6 mM for γ-CD, 8 mM for DMB and 4 mM for HP-β-CD and RMB). The values obtained indicate relatively weak interactions between RSV and γ-CD, initially weak interaction with HP-β-CD and RMB, fairly strong binding with β-CD and TMB, and the formation of a very stable complex

Synthesis and characterization of pH responsive D-glucosamine based molecular gelators

• Navneet Goyal,
• Hari P. R. Mangunuru,
• Bargav Parikh,
• Sonu Shrestha and
• Guijun Wang

Beilstein J. Org. Chem. 2014, 10, 3111–3121, doi:10.3762/bjoc.10.328

• collective weak interactions of gelators result in self-assembled supramolecular networks and lead to the formation of stable reversible gels. A majority of small molecular gelators were discovered by chance and their structural requirements are ambiguous. Many different structural classes have been found to