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Search for "protein" in Full Text gives 362 result(s) in Beilstein Journal of Nanotechnology. Showing first 200.
AI-assisted models to predict chemotherapy drugs modified with C60 fullerene derivatives
Beilstein J. Nanotechnol. 2024, 15, 1170–1188, doi:10.3762/bjnano.15.95
- –COOH) were investigated with the protein CXCR7 as the molecular docking target. The research involved over 30 drugs and employed Pearson’s hard–soft acid–base theory and common QSAR/QSPR descriptors to build predictive models for the docking scores. Energetic descriptors were computed using quantum
- ][17]. This G-protein is targeted because studies show a possible positive effect on inhibiting the metastasis of cervical cancer cells [18]. However, more clinical and preclinical studies on CXCR7 and its co-player CXCR4 are required since alterations have been detected in diseases such as cancer
- descriptors for predictive models. Besides, Pearson’s hard–soft acid–base (HSAB) theory suggests other descriptors to describe and predict the interactions between chemical species, such as those between a drug molecule as a ligand and a protein [32]. These quantitative values are based on the vertical
Recent updates in applications of nanomedicine for the treatment of hepatic fibrosis
Beilstein J. Nanotechnol. 2024, 15, 1105–1116, doi:10.3762/bjnano.15.89
- to the trans-differentiation of hepatic stellate cells (HSCs) into collagen-producing myofibroblasts, resulting in the progressive accumulation of extracellular matrix (ECM) protein [12]. The condition may be caused by various etiologies, including viral hepatitis infection, alcohol abuse, and
- targeting activated HSCs. The presence of HSA on the surface of the nanocrystals may facilitate active targeting to activated HSCs via secreted protein acidic and rich in cysteine (SPRAC)-mediated endocytosis. It was reported that the activated HSCs overexpressed SPRAC, which is known as classic albumin
- binding protein. This protein is not available in hepatocytes, thus enabling specific targeting to activated HSCs in liver fibrosis [72]. Tan and co-workers also constructed albumin–mannose 6-phosphate-modified solid lipid NPs to deliver matrine to HSCs [73]. The active substance matrine was first loaded
Interface properties of nanostructured carbon-coated biological implants: an overview
Beilstein J. Nanotechnol. 2024, 15, 1041–1053, doi:10.3762/bjnano.15.85
- response. The mechanisms involved in inflammation related to NDs are not yet clear, but authors suggest that the process is started by serum protein deposition triggering the inflammatory cascade. Moreover, polymeric films containing NDs were optimum substrates for osteoblast proliferation as reported by
- roughness, inducing macrophage polarization to the pro-inflammatory state without producing a great excess of pro-inflammatory factors. Furthermore, GO-coated implants showed a reduction of the expression of the fibrosis-related protein α-SMA and collagen deposition in the presence of both fibroblasts and
- the FimH protein complex involved in bladder infection. CNTs also prevent the formation of biofilm as reported by Sivaraj et al. [126], who obtained zones of inhibition of up to 12 mm. Morco et al. [127] suggested that the biofilm inhibition by CNTs is mainly due to the increase of surface
Entry of nanoparticles into cells and tissues: status and challenges
Beilstein J. Nanotechnol. 2024, 15, 1017–1029, doi:10.3762/bjnano.15.83
- involved in macropinocytosis, the CLIC/GEEC (clathrin-independent carrier/glycosylphosphatidylinositol (GPI)-anchored protein-enriched endosomal compartments) pathway, as well as in FEME (fast endophilin-mediated endocytosis) and phagocytosis (an uptake mechanism for large particles mostly found in
- , it was recently published that globular particles with regularly spaced green fluorescent protein (GFP) and a diameter of 40 nm could induce membrane curvature and be internalized when binding to glycosylphosphatidyl-anchored GFP nanobodies [19]. Vesicle formation was energy dependent and dynamin
- stimulation of protein kinase A [7]. To which extent this is a general phenomenon is still unknown. In contrast, in endothelial cells caveolae can be seen on both sides of the endothelial cell layer, and caveolae have been reported to be involved in transcytosis across the cell layer [23]. It should, however
Therapeutic effect of F127-folate@PLGA/CHL/IR780 nanoparticles on folate receptor-expressing cancer cells
Beilstein J. Nanotechnol. 2024, 15, 954–964, doi:10.3762/bjnano.15.78
- . The outer PEO corona prevents aggregation, protein adsorption, and recognition by the reticuloendothelial system, while the hydrophobic PPO core may be modified to contain hydrophobic anticancer drugs, fluorophores, or even anchor to the hydrophobic layer of the nanoparticles [8][9]. The F127
- increased, respectively, to 372 nm and 0.486 for F127-folate@PLGA/CHL/IR780, and, respectively, to 288 nm and 0.663 for F127@PLGA/CHL/IR780. The increase in nanoparticle size could be the result of protein absorption the nanoparticle surface [38]. However, the absorption of protein from the cell culture
- than the negative ones [42]. Preventing protein absorption by nanoparticles might enhance the systemic half-life of nanoparticles. According to reports, nanoparticles with a stealth surface have a longer half-life [39]. Typically, hydrophilic substances, such as PVA and PEG, serve as stealth surface
Electrospun nanofibers: building blocks for the repair of bone tissue
Beilstein J. Nanotechnol. 2024, 15, 941–953, doi:10.3762/bjnano.15.77
- bone [16]. The most dominant component of the organic matrix is collagen, which is synthesized by osteoblasts and performs many mechanical functions. Collagen is a protein found abundantly not only in bones but also in almost every tissue of mammals. One third of all body proteins are collagens [20
- ]. Type-I collagen constitutes approximately 90–95% of the organic matrix in bone tissue, and smaller amounts of other collagen types (i.e., III, V, X, and XII) are included in the bone composition [12][21]. It has been emphasized that type-I collagen is the most important protein structure that carries
- responsible for bone remodeling. Osteoblasts are tightly bound to each other and they cover the bone surface. They are also known as protein-synthesizing cells and responsible for bone formation because they secrete organic bone matrix. Following the formation of this unmineralized cell matrix called osteoid
Identification of structural features of surface modifiers in engineered nanostructured metal oxides regarding cell uptake through ML-based classification
Beilstein J. Nanotechnol. 2024, 15, 909–924, doi:10.3762/bjnano.15.75
- “protein corona”, which dictates the biological characteristics of the nanoparticles [10][11]. The composition of this corona is variable and relies on the concentrations and affinities of its different components to the nanoparticle surface. Cellular uptake of NPs happens through receptor-mediated active
The effect of age on the attachment ability of stick insects (Phasmatodea)
Beilstein J. Nanotechnol. 2024, 15, 867–883, doi:10.3762/bjnano.15.72
- . aeta. Some arthropod claws, such as those in ticks [69], have been shown to contain small amounts of resilin, an elastomeric protein providing flexibility in cuticle composites [70]. Voigt and Gorb [69] also suspect resilin to occur in other arthropod claws as well, but melanization impedes
Functional fibrillar interfaces: Biological hair as inspiration across scales
Beilstein J. Nanotechnol. 2024, 15, 664–677, doi:10.3762/bjnano.15.55
- cells (bacteria) should not be confused. Eukaryotic flagella are essentially the same organelles as cilia, consisting of a well-organized microtubular backbone and orchestrated internal protein motors, whereas bacterial flagella are simply passive, stiff filaments. The passive nature of the hairs does
- still made of the protein complex keratin. Plants also make use of fibrillar structures to provide defense against predators. These structures are known as trichomes and vary in morphology and density. While trichomes may also secrete chemicals to warn predators, they can impale insects and their larvae
- generation. The flagella of archaea and bacteria are themselves passive hairs and are driven by protein motors at the base. Hair-like ultrastructures, or mastigonemes, on eukaryotic flagella/cilia comprise helical glycoproteins (≈10–20 nm thick) and lack a membrane [106]. They can be either stiff or flexible
Comparative analysis of the ultrastructure and adhesive secretion pathways of different smooth attachment pads of the stick insect Medauroidea extradentata (Phasmatodea)
Beilstein J. Nanotechnol. 2024, 15, 612–630, doi:10.3762/bjnano.15.52
- both layers emit a blue signal, indicative of the presence of resin (rubber-like protein) with relatively soft properties (Figure 3C). The morphological details of these layers are also apparent in longitudinal microtome sections (Figure 3B) and SEM sections (Figure 3D). The primary rod layer is
On the additive artificial intelligence-based discovery of nanoparticle neurodegenerative disease drug delivery systems
Beilstein J. Nanotechnol. 2024, 15, 535–555, doi:10.3762/bjnano.15.47
- , protein targeting, the prediction of coated-NP drug release systems [41][42][43][44][45][46][47][48][49], multitarget networks of neuroprotective compounds for a theoretical study of new asymmetric 1,2-rasagiline carbamates [50], a TOPS-MODE model of multiplexing neuroprotective effects of drugs, an
- biological activity parameter, cd1, the target protein involved in NDs, cd2, the cell line for NDD assays, and cd3, the model organism. Each one of these assays included one out of n(cd0) = 46 possible biological activity parameters (e.g., EC50 or Ki (nM)). They also involved some of the n(cd1) = 21 target
- included another set of discrete variables used to codify the nature/quality of data. These variables are cd4, the type of target, cd5, the type of assay, cd6, the data curation, cd7, the confidence score, and cd8, the target mapping. Specifically, the target types are n(cd4) = 6 (single protein, organism
Cholesterol nanoarchaeosomes for alendronate targeted delivery as an anti-endothelial dysfunction agent
Beilstein J. Nanotechnol. 2024, 15, 517–534, doi:10.3762/bjnano.15.46
- have lately been described [30][31][32]. Endothelial cells express a diversity of innate immune receptors including Toll-like receptors (TLRs) and NOD-like receptors (NLRs), which activate intracellular inflammatory pathways mediated by nuclear factor kappa B (NF-kB) and the mitogen-activated protein
- -fraction V were obtained from Sigma-Aldrich (MO, USA). Lissamine™ rhodamine B 1,2-dihexadecanoyl-sn-glycero-3-phosphoethanolamine triethylammonium salt (RhPE), Hoechst 33342, Pierce™ BCA Protein Assay Kit, and CM-H2DCFDA (general oxidative stress indicator) were purchased from Thermo Fisher Scientific (MA
Classification and application of metal-based nanoantioxidants in medicine and healthcare
Beilstein J. Nanotechnol. 2024, 15, 396–415, doi:10.3762/bjnano.15.36
- than copper content and size. The enzyme activity of natural CAT highly depends on the three-dimensional (3D) structure of the protein. A significant decrease or even loss of CAT activity can be caused already by small changes in the protein conformation and structure. As a matter of fact, cellular
- is caused by protein denaturation at high temperatures. Impressively, Co3O4 nanomaterials with different morphologies (nanoplates, nanorods, and nanocubes) exhibited the highest relative activity at very high pH (pH 9) and temperature (90 °C) [39]. Similar results were also reported for platinum
- lipoprotein receptor-related protein overexpressed on cells that comprise the BBB. Figure 3 illustrates the biodistribution and ROS scavenging activity of edaravone-encapsulated nanospherical albumin (EeNA) [91]. Alzheimer’s disease is a neurological disease that slowly destroys thinking skills and memory
Nanomedicines against Chagas disease: a critical review
Beilstein J. Nanotechnol. 2024, 15, 333–349, doi:10.3762/bjnano.15.30
- , resulting in its fast killing. Lately, it was suggested that the major metabolic impact of BNZ is on the glutathione (and trypanothione) pathway so that covalent binding of BNZ with low-molecular-weight thiols and with protein thiols is the drug’s primary mode of action against T. cruzi [15]. In mammalian
- Loncastuximab tesirine, launched in 2021 to treat B-cell lymphoma [84]. Nearly 10% are polymer–drug/protein conjugates such as polyethylene glycol-ʟ-asparaginase (Calaspargase pegol, Asparlas), launched in 2019 in the USA to treat acute lymphoblastic leukemia [85]. Another 10% are protein-based nanoparticles
- including Abraxane, the first formulation based on protein nanotechnology launched in 2005 [86]. Nearly 10% are inorganic nanoparticles such as the radiosensitizer Hensify, which in 2019 obtained CE Mark approval in the European Union for the treatment of locally advanced soft tissue sarcoma. This category
Exploring the relationships between physiochemical properties of nanoparticles and cell damage to combat cancer growth using simple periodic table-based descriptors
Beilstein J. Nanotechnol. 2024, 15, 297–309, doi:10.3762/bjnano.15.27
- protein corona. The formation of a protein corona on the surface of NPs, which influences the interaction with cell membranes or proteins, is also associated with zeta potential and surface charge. Very limited studies have reported the influence of zeta potential, surface charge, hydrophobicity, and
- hydroxyl radicals, resulting in oxidative damage to proteins. Moreover, they can bind non-specifically to amino acid residues and replace existing metal ions at active sites of enzymes, leading to abnormal protein folding. Protein aggregation diseases are a type of neurodegenerative diseases that occur
Multiscale modelling of biomolecular corona formation on metallic surfaces
Beilstein J. Nanotechnol. 2024, 15, 215–229, doi:10.3762/bjnano.15.21
- modelling of the interaction between various surfaces, that is (100), (110), and (111), of fcc aluminum with the most abundant milk proteins and lactose. Our approach combines atomistic molecular dynamics, a coarse-grained model of protein adsorption, and kinetic Monte Carlo simulations to predict the
- protein corona composition in the deposited milk layer on aluminum surfaces. We consider a simplified model of milk, which is composed of the six most abundant milk proteins found in natural cow milk and lactose, which is the most abundant sugar found in dairy. Through our study, we ranked selected
- provide valuable insights into the mechanisms of lactose and protein deposition on aluminum surfaces, which can aid in the general understanding of protein corona formation. Keywords: all atomistic; aluminum; bionano interface; coarse grained model; lactose; milk protein; multiscale modelling; protein
Nanocarrier systems loaded with IR780, iron oxide nanoparticles and chlorambucil for cancer theragnostics
Beilstein J. Nanotechnol. 2024, 15, 180–189, doi:10.3762/bjnano.15.17
- and target efficacy. To increase the blood half-life, stealth materials have been attached to the nanoparticle surface to prevent protein adsorption and immune cell phagocytosis [4]. Most sheath materials are hydrophilic polymers such as poly(vinyl alcohol), poly(ethylene glycol), and poly(ethylene
- cytoskeleton and chlorambucil (CHL) inhibits DNA synthesis. These drugs can be encapsulated inside nanoparticles for administration to increase the stability of the medication in circulation and therapeutic efficacy. For example, doxorubicin can be inserted into liposomes and paclitaxel attaches to the protein
- NPs also helps to maintain its stability. Poly(ethylene glycol) (PEG) on the surface of NPs would serve as a brush to inhibit serum protein adsorption [4]. The PEO block of F127 shares the same core structure as PEG; hence, the emergence of a form of PEG would likewise improve the pharmacokinetics of
Assessing phytotoxicity and tolerance levels of ZnO nanoparticles on Raphanus sativus: implications for widespread adoptions
Beilstein J. Nanotechnol. 2024, 15, 115–125, doi:10.3762/bjnano.15.11
- light scattering (DLS), and scanning electron microscopy (SEM). The effect of ZnO NPs (70 nm) on R. sativus grown in coir was evaluated. The application of 1,000 mg/L of ZnO NPs resulted in a significant increase (p < 0.05) in soluble protein content, carbohydrates, chlorophyll a (Chl-a), chlorophyll b
- (p < 0.05) in soluble protein content by 23.1%, accompanied by a notable increase in IAA by 31.1%, indicating potential toxicity. The use of atomic absorption spectroscopy confirmed the internalization of zinc in seedlings, with a statistically significant increase (p < 0.05). In control plants
- at higher doses was investigated against R. sativus to determine its tolerance. Further, this study also attempted to assess the accumulation of Zn in R. sativus seedlings by determining the effect of ZnO NPs on the soluble protein content, indole acetic acid (IAA) content, total carbohydrate content
Study of the reusability and stability of nylon nanofibres as an antibody immobilisation surface
Beilstein J. Nanotechnol. 2024, 15, 83–94, doi:10.3762/bjnano.15.8
- nanofibres with well-oriented antibodies anchored by protein A/G. Our study shows that stripping with glycine buffer pH 2.5 allows the nanofibres to be reused as long as protein A/G has been previously anchored, leaving both nanofibre and protein A/G unchanged. On the other hand, we investigated the
- stability of the nylon nanofibres. To achieve this, we analysed any loss of immunocapture ability of well-oriented antibodies anchored both to the nylon nanofibres and to a specialised surface with high protein binding capacity. The nanofibre immunocapture system maintained an unchanged immunocapture
- reusability study”. Ricin has been chosen as a representative biotoxin because it has been used in biological warfare attacks because of its high toxicity, stability, and availability. It belongs to the ribosome-inactivating protein family and causes cell death by disrupting protein synthesis [20]. Results
Nanotechnological approaches in the treatment of schistosomiasis: an overview
Beilstein J. Nanotechnol. 2024, 15, 13–25, doi:10.3762/bjnano.15.2
- , Adekiya et al. [40] produced PZQ encapsulated in nanoliposomes whose surface was modified with an antibody against calpain, a protein found in the tegument of the parasite and is upregulated in the regions where host–parasite interaction occurs [41]. The modified nanoparticles orally administered two or
Fluorescent bioinspired albumin/polydopamine nanoparticles and their interactions with Escherichia coli cells
Beilstein J. Nanotechnol. 2023, 14, 1208–1224, doi:10.3762/bjnano.14.100
- applications, especially because of their biocompatibility. We synthesized and characterized fluorescent PDA NPs of 10–25 nm diameter based on a protein containing a lysine–glutamate diad (bovine serum albumin, BSA) and determined whether they can penetrate and accumulate in bacterial cells to serve as a
- additive plays a crucial role in the control of the NP size. Specifically, Bergtold et al. demonstrated that a protein (e.g. chromofungin) containing a diad of lysine (K) and glutamate (E) (Figure 1a,b) in its sequence allows for the control of the formation of PDA NPs, in contrast to an additive without a
- aromatic ring of dopamine (Figure 1c). For this, K and E residues must be next to each other. Even a single glycine residue (G) located between K and E can destabilize the aggregates [13]. Among such possible additives, the albumin protein is an interesting candidate since it contains one KE diad and is
Hierarchically patterned polyurethane microgrooves featuring nanopillars or nanoholes for neurite elongation and alignment
Beilstein J. Nanotechnol. 2023, 14, 1157–1168, doi:10.3762/bjnano.14.96
- had a rounded bottom. The space between the pillars and holes were around 860 nm and 330 nm, respectively. The wettability of a surface is a good predictor of protein adsorption and bioactivity [20]. For the extracellular matrix protein laminin, good adsorption and cell growth have been found on
Curcumin-loaded albumin submicron particles with potential as a cancer therapy: an in vitro study
Beilstein J. Nanotechnol. 2023, 14, 1127–1140, doi:10.3762/bjnano.14.93
- stability and solubility [9]. The complexation occurs mainly through hydrophobic interactions in protein cavities [10][11]. In a recent study, zein nanoparticles loaded with CUR have been studied for their potential in treating brain tumors, and the results have demonstrated a reduction in the proliferation
- 1644 and 1546 cm−1 indicated the vibration adsorption of amide I (C=O stretching) and amide II (C–N stretching and N–H bending vibrations), respectively. These are the main vibrational bands in the albumin backbone that formed the secondary structure of the protein. It is also seen that the absorption
- peaks of HSA-MPs (orange line spectrum) have almost the same characteristic peaks of HSA, including amide I and amide II. Interestingly, the similarity between the absorption peaks of HSA-MPs and CUR-HSA-MPs (red line spectrum) suggests that CUR encapsulation does not significantly alter the protein
Recognition mechanisms of hemoglobin particles by monocytes – CD163 may just be one
Beilstein J. Nanotechnol. 2023, 14, 1028–1040, doi:10.3762/bjnano.14.85
- occur in the liver [24][25][26]. The question of the mechanisms by which HBOCs are sequestered remains partly unclear though. Possible degradation pathways include haptoglobin (Hp), which, depending on the size and surface properties of HBOCs, could bind its physiological target protein hemoglobin [16
- site within the Hb α chain is freely accessible (exclusively β-crosslinked Hb vs α-crosslinked Hb) [27]. Intermolecular modifications changing the molecular or polymer size of HBOCs [16][19][30] are relevant for protein binding as well. Hemoglobin sub-micron particles (HbMPs) obtained via
- since both proteins are specific for monocytes. CD163 was tested because of its direct affinity to Hb. Also, we tested the effect of blocking CD204 (scavenger receptor A/SR-A). SR-A is a membrane protein occurring in the monocyte/macrophage lineage. Playing an important role in host defense, it exhibits
Nanoarchitectonics of photothermal materials to enhance the sensitivity of lateral flow assays
Beilstein J. Nanotechnol. 2023, 14, 988–1003, doi:10.3762/bjnano.14.82
- 2017 to determine the impact of GNP size on LFA performance [25]. They compared three different sizes of GNPs (30, 60, and 100 nm) in order to determine both the colorimetric and photothermal effect on the LFA membrane (Figure 7A). The group considered C-reactive protein as a model antigen, and the
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