Rhodopyran, a carboxylated hexahydrocyclopenta[b]pyran from Rhodococcus

• Enjuro Harunari,
• Sara Fushimi and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2026, 22, 1107–1113, doi:10.3762/bjoc.22.89

• unusual carboxylated hexahydrocyclopenta[b]pyran and expands the known metabolite diversity of Rhodococcus, highlighting Rhodococcus as a source of uncommon natural-product scaffolds. Keywords: bicyclic compound; cyclopenta[b]pyran; natural products; Rhodococcus; specialized metabolites; Introduction

Ring contraction and ring expansion reactions in terpenoid biosynthesis and their application to total synthesis

• Nicolas Kratena,
• Nicolas Heinzig and
• Peter Gärtner

Beilstein J. Org. Chem. 2026, 22, 289–343, doi:10.3762/bjoc.22.21

Recent advances in total synthesis of illisimonin A

• Juan Huang and
• Ming Yang

Beilstein J. Org. Chem. 2025, 21, 2571–2583, doi:10.3762/bjoc.21.199

• transpositions [31]. Starting from (S)-carvone (67), reaction with allyl bromide introduced an allyl group to give 68, which was then converted to the bicyclic compound 69 via a ring-closing metathesis (RCM) reaction followed by one-pot epimerization at the α-position of the carbonyl group (Scheme 7

Enantioselective desymmetrization strategy of prochiral 1,3-diols in natural product synthesis

• Lihua Wei,
• Rui Yang,
• Zhifeng Shi and
• Zhiqiang Ma

Beilstein J. Org. Chem. 2025, 21, 1932–1963, doi:10.3762/bjoc.21.151

• JohnPhos (6) induced cyclization, yielding bicyclic compound 7 with a 7-membered heterocycle. Final deprotection of the methoxymethyl (MOM) group in 7 afforded (+)-heliannuol D (8). Having successfully applied PPL-catalyzed acetylation to the synthesis of (+)-heliannuol D, the Shishido group subsequently

• ), compound 154 underwent epoxidation followed by acid-mediated cyclization to yield bicyclic compound 155. The synthesis was completed through a nine-step conversion of 155 to obtain (−)-dysiherbaine (156). To construct the asymmetric quaternary carbon centers with an amino group, the Kang group developed a

• 226. Regioselective hydrolysis of 226 with TFA yielded a dihydropyran intermediate, which was benzylated to deliver 227. Desilylation of 227 gave diol 228, which underwent intramolecular Michael reaction to form bicyclic compound 230 as a single stereoisomer (87% yield over two steps). This scaffold

Strategies to access the [5-8] bicyclic core encountered in the sesquiterpene, diterpene and sesterterpene series

• Cécile Alleman,
• Charlène Gadais,
• Laurent Legentil and
• François-Hugues Porée

Beilstein J. Org. Chem. 2023, 19, 245–281, doi:10.3762/bjoc.19.23

• ]. Dihydrolimonene 25 was converted in 9 steps into compound 60 before subsequent RCM. As the authors knew G-I catalyst isomerizes β,γ-unsaturated ketones, G-II catalyst was chosen to produce bicyclic compound 61. Several additional steps were necessary to forge the last ring and obtain the core structure 63 of this

Synthesis of (−)-halichonic acid and (−)-halichonic acid B

• Keith P. Reber and
• Emma L. Niner

Beilstein J. Org. Chem. 2022, 18, 1629–1635, doi:10.3762/bjoc.18.174

• chloroform was treated with a large excess (85–100 equiv) of formic acid at room temperature, we were pleased to observe the formation of bicyclic compound 8 as the major product in 64% yield. Notably, 8 is the ethyl ester of (−)-halichonic acid and features the characteristic 3-azabicyclo[3.3.1]nonane ring

Vicinal ketoesters – key intermediates in the total synthesis of natural products

• Marc Paul Beller and
• Ulrich Koert

Beilstein J. Org. Chem. 2022, 18, 1236–1248, doi:10.3762/bjoc.18.129

• -ketoester 62, followed by nucleophilic addition of isopropenylmagnesium bromide to give α-hydroxyester 63 in excellent yield and diastereoselectivity. Eight additional steps gave the bicyclic compound 64 which was already known from previous camptothecin syntheses. Isoretronecanol The α-ketoester moiety can

On the application of 3d metals for C–H activation toward bioactive compounds: The key step for the synthesis of silver bullets

• Renato L. Carvalho,
• Amanda S. de Miranda,
• Mateus P. Nunes,
• Roberto S. Gomes,
• Guilherme A. M. Jardim and
• Eufrânio N. da Silva Júnior

Beilstein J. Org. Chem. 2021, 17, 1849–1938, doi:10.3762/bjoc.17.126

• free amine derivative was produced in 43% overall yield. The 2,8-dioxabicyclo[3.3.1]nonane skeleton is contained in biflavonoids and was shown to exhibit many medicinal activities like antiviral, anti-inflammatory and antitumor properties. The bicyclic compound 49 was aminated at the benzylic position

Prins cyclization-mediated stereoselective synthesis of tetrahydropyrans and dihydropyrans: an inspection of twenty years

• Asha Budakoti,
• Pradip Kumar Mondal,
• Prachi Verma and
• Jagadish Khamrai

Beilstein J. Org. Chem. 2021, 17, 932–963, doi:10.3762/bjoc.17.77

• °C to afford corresponding fluorinated bicyclic compound 284 [108]. A catalytic amount of TMSCl generates TMS-protected alcohol 279 and HCl. The activated aldehyde 280 reacts with 279 to form the intermediate 281. Then, the TMS group in 281 is attacked by F− in the presence of HCl to give the

Pauson–Khand reaction of fluorinated compounds

• Jorge Escorihuela,
• Daniel M. Sedgwick,
• Alberto Llobat,
• Mercedes Medio-Simón,
• Pablo Barrio and
• Santos Fustero

Beilstein J. Org. Chem. 2020, 16, 1662–1682, doi:10.3762/bjoc.16.138

• bicyclic compound since the double and triple bonds are too distant. In a following paper by Billard and co-workers, the PKR of oxygen-containing 1,7-enynes was assayed, affording trifluoromethylated oxygenated bicyclic enones (Scheme 9) [48]. Under classical stoichiometric conditions (reaction with Co2(CO

Reusable and highly enantioselective water-soluble Ru(II)-Amm-Pheox catalyst for intramolecular cyclopropanation of diazo compounds

• Hamada S. A. Mandour,
• Yoko Nakagawa,
• Masaya Tone,
• Hayato Inoue,
• Nansalmaa Otog,
• Ikuhide Fujisawa,
• Soda Chanthamath and
• Seiji Iwasa

Beilstein J. Org. Chem. 2019, 15, 357–363, doi:10.3762/bjoc.15.31

• substituents on the aromatic ring also underwent the cyclopropanation reaction affording the desired bicyclic compound in high yield and enantioselectivity (Scheme 1, 2o). Remarkably, the derivative featuring the bulky naphthyl group instead of the phenyl group was also well tolerated and afforded the

Non-metal-templated approaches to bis(borane) derivatives of macrocyclic dibridgehead diphosphines via alkene metathesis

• Tobias Fiedler,
• Michał Barbasiewicz,
• Michael Stollenz and
• John A. Gladysz

Beilstein J. Org. Chem. 2018, 14, 2354–2365, doi:10.3762/bjoc.14.211

• first metathesis step does not require a syn relationship (per VIII), the same possibility can be entertained for the second (see IX). This would lead to an isomeric bicyclic compound with "crossed chains". We have sought to access such species by conducting metatheses of substrates of the types in

An amphiphilic pseudo[1]catenane: neutral guest-induced clouding point change

• Tomoki Ogoshi,
• Tomohiro Akutsu and
• Tada-aki Yamagishi

Beilstein J. Org. Chem. 2018, 14, 1937–1943, doi:10.3762/bjoc.14.167

• /hydrophilic ratio in a molecule largely affects its assembled properties in aqueous media. In this study, we synthesized a new bicyclic compound which could dynamically change its hydrophobic/hydrophilic ratio by chemical stimulus. The bicyclic compound consisted of amphiphilic pillar[5]arene and hydrophobic

• alkyl chain rings, and formed a self-inclusion structure in aqueous media, which was assigned as a pseudo[1]catenane structure. The hydrophobic chain ring was hidden inside the pillar[5]arene cavity in the pseudo[1]catenane structure, thus the bicyclic compound was soluble in water at 20 °C with a

• aggregation of the hydrophobic alkyl chain rings, which induced insolubilization of the bicyclic compound in aqueous media at 20 °C and a decrease in its clouding point. Keywords: amphiphilic molecules; host–guest complexes; lower critical solution temperature; pillar[n]arenes; pseudo[1]catenane

Muraymycin nucleoside-peptide antibiotics: uridine-derived natural products as lead structures for the development of novel antibacterial agents

• Daniel Wiegmann,
• Stefan Koppermann,
• Marius Wirth,
• Giuliana Niro,
• Kristin Leyerer and
• Christian Ducho

Beilstein J. Org. Chem. 2016, 12, 769–795, doi:10.3762/bjoc.12.77

• unwanted diastereomer 22, the synthesis was finished with the desired minor component 23. Boc deprotection followed by reaction with guanidinylation reagent 24 gave bicyclic compound 25. The next steps included a desulfonylation and the reaction with 26 leading to protected epicapreomycidine-containing

Copper-catalyzed asymmetric conjugate addition of organometallic reagents to extended Michael acceptors

• Thibault E. Schmid,
• Sammy Drissi-Amraoui,
• Christophe Crévisy,
• Olivier Baslé and
• Marc Mauduit

Beilstein J. Org. Chem. 2015, 11, 2418–2434, doi:10.3762/bjoc.11.263

• ring closing metathesis to afford the bicyclic product 53. Finally, the RCM of the 1,4-adduct resulting from the addition of 3-butenylmagnesium bromide yielded the spiro compound 54. Interestingly, the conversion of bicyclic compound 40 catalyzed by the same system also occurred selectively in the 4

Recent applications of ring-rearrangement metathesis in organic synthesis

• Sambasivarao Kotha,
• Milind Meshram,
• Priti Khedkar,
• Shaibal Banerjee and
• Deepak Deodhar

Beilstein J. Org. Chem. 2015, 11, 1833–1864, doi:10.3762/bjoc.11.199

• a RRM [63]. The bicyclic compound 299 was identified as a key building block for the synthesis of 8-epihalosaline (300) and porantheridine (301). To this end, but-3-enoic acid (296) was converted to the required compound 297, which on subjection to NDA in the presence of cyclopentadiene (111

• -allylbicyclo[2.2.2]octenol derivative 313 was identified as a key building block in the synthetic sequence, which was prepared from bicyclic system 312 in two steps. When the bicyclic compound 313 (endo isomer) was subjected to a RRM sequence with catalyst 2 in the presence of ethylene (24) at room temperature

• hydroquinoline derivative 327 in 81% yield. Further, they have used the bicyclic compound 327 as a key building block in the total synthesis of (+)-luciduline (Scheme 71). Lepadins are natural products consisting of cis-fused decahydroquinoline subunits and they display cytotoxic activity against many human

Tetrathiafulvalene chemistry

• Peter J. Skabara and
• Marc Sallé

Beilstein J. Org. Chem. 2015, 11, 1528–1529, doi:10.3762/bjoc.11.167

• nineteen seventies [1][2][3] and since then has proved to be exceptionally popular in various fields of chemistry. This success results from the conjunction of intrinsic structural and electronic properties: i) structurally, this sulfur-rich bicyclic compound is essentially planar (at least in the radical

Synthesis of rigid p-terphenyl-linked carbohydrate mimetics

• Maja Kandziora and
• Hans-Ulrich Reissig

Beilstein J. Org. Chem. 2014, 10, 1749–1758, doi:10.3762/bjoc.10.182

• -allene. The Lewis acid-induced rearrangement of this heterocycle provided the corresponding bicyclic 1,2-oxazine derivative that may be regarded as internally protected amino sugar analogue. After subsequent reduction of the carbonyl group, the resulting bicyclic compound was used for Suzuki cross

• compound 15a to phenylboronic acid under standard conditions of this reaction. The desired product 18 was obtained in 81% yield (Scheme 8) and the subsequent hydrogenolysis furnished carbohydrate mimetic 19 bearing a biphenyl substituent. The smooth transformation of bicyclic compound 15a into a biphenyl

• understanding of this unexpected result the reductive cleavage was examined with the simpler bicyclic 1,2-oxazine derivative 12a. Here the unexpected bicyclic compound 24 was isolated as major product in 79% yield together with the desired aminopyran derivative 25 in 14% yield. It was observed by 1H NMR

Isocyanide-based multicomponent reactions towards cyclic constrained peptidomimetics

• Gijs Koopmanschap,
• Eelco Ruijter and
• Romano V.A. Orru

Beilstein J. Org. Chem. 2014, 10, 544–598, doi:10.3762/bjoc.10.50

• cyclization towards bicyclic systems (Scheme 14) such as pyrrolo-oxazepinediones 41 and pyrrolodiazepinediones 43. The latter could be used as inhibitor for aminopeptidase P. In addition, incorporation of convertible isocyanides gave access to bicyclic compound 45 [13]. A one pot synthesis towards

Synthesis of new enantiopure poly(hydroxy)aminooxepanes as building blocks for multivalent carbohydrate mimetics

• Léa Bouché,
• Maja Kandziora and
• Hans-Ulrich Reissig

Beilstein J. Org. Chem. 2014, 10, 213–223, doi:10.3762/bjoc.10.17

• in situ generated formaldehyde (dehydrogenation of methanol) [50][51][52][53] and subsequent aminal formation with aminooxepanes 26 and 27. The aminoalcohol 28 seems not to form the corresponding compounds. We suppose that bicyclic compound 28 is more strained and hence the formation of a third ring

• -dimethyloxepan-3,5-diol (26): Bicyclic compound 14 (100 mg, 0.309 mmol) was dissolved in dry MeOH (10 mL) and AcOH (2 mL). After addition of Pd/C (100 mg, 0.094 mmol Pd) the suspension was saturated with hydrogen at rt for 1 h followed by stirring under hydrogen pressure (balloon). After reaction completion 18 h

Synthesis of five- and six-membered cyclic organic peroxides: Key transformations into peroxide ring-retaining products

• Alexander O. Terent'ev,
• Dmitry A. Borisov,
• Vera A. Vil’ and
• Valery M. Dembitsky

Beilstein J. Org. Chem. 2014, 10, 34–114, doi:10.3762/bjoc.10.6

Some aspects of radical chemistry in the assembly of complex molecular architectures

• Béatrice Quiclet-Sire and
• Samir Z. Zard

Beilstein J. Org. Chem. 2013, 9, 557–576, doi:10.3762/bjoc.9.61

• the ready formation of bicyclic compound 72 [33]. The use of a phosphonate-containing alkene allows the assembly of numerous polycyclic structures by combining the radical addition of a ketone-bearing xanthate with an intramolecular Horner–Wadsworth–Emmons condensation. This strategy is highlighted in

Gold-catalyzed propargylic substitutions: Scope and synthetic developments

• Olivier Debleds,
• Eric Gayon,
• Emmanuel Vrancken and
• Jean-Marc Campagne

Beilstein J. Org. Chem. 2011, 7, 866–877, doi:10.3762/bjoc.7.99

• an one-pot, sequential, reaction with first a gold(III)-catalyzed propargylic substitution followed by a gold(I)-catalyzed cycloisomerization, the bicyclic compound 37 was obtained in 71% yield [24][80][81][82]. Very recently, a remarkable one-pot reaction using an original gold(III) catalyst has

Gold-catalyzed heterocyclizations in alkynyl- and allenyl-β-lactams

• Benito Alcaide and
• Pedro Almendros

Beilstein J. Org. Chem. 2011, 7, 622–630, doi:10.3762/bjoc.7.73

• afforded rather low yields or disappointing diastereomeric mixtures of the bicyclic compound 9a. Although AgNO3 was less diastereoselective than [PtCl2(CH2=CH2)]2 (60:40 vs 100:0), it was, nevertheless, a more efficient catalyst and gave adduct 9a in reasonable yield. Gratifyingly, it was found that Au

Addition of lithiated enol ethers to nitrones and subsequent Lewis acid induced cyclizations to enantiopure 3,6-dihydro-2H-pyrans – an approach to carbohydrate mimetics

• Fabian Pfrengle and
• Hans-Ulrich Reissig

Beilstein J. Org. Chem. 2010, 6, No. 75, doi:10.3762/bjoc.6.75

• initially formed in the dihydroxylation was observed leading to an inseparable mixture of compounds 13 and 14. The TBS-protection group was completely removed during bromination of the enol ether moiety with the formation of compound 15 in good yield [20]. The internal enol ether moiety of the bicyclic

• compound trans-5b could also be converted into the corresponding α-bromoketone with the bromination reagent NBS to give the ring opened product 16 (Scheme 7). The two possible diastereomers were formed in a ratio of 92:8, as indicated by 1H NMR spectroscopy and have not been separated. Bromination of the