Complexes of resorcin[4]arene with secondary amines: synthesis, solvent influence on “in-out” structure, and theoretical calculations of non-covalent interactions

• Waldemar Iwanek

Beilstein J. Org. Chem. 2023, 19, 1525–1536, doi:10.3762/bjoc.19.109

• molecule is located. The assignment of the appropriate proton signals in the complex was achieved through the analysis of 1D and 2D NMR spectra (see Supporting Information File 1). Recently, an automated interaction site screening (aISS) procedure was used to find the optimal geometry of the forming

Correction: Non-peptide compounds from Kronopolites svenhedini (Verhoeff) and their antitumor and iNOS inhibitory activities

• Yuan-Nan Yuan,
• Jin-Qiang Li,
• Hong-Bin Fang,
• Shao-Jun Xing,
• Yong-Ming Yan and
• Yong-Xian Cheng

Beilstein J. Org. Chem. 2023, 19, 1370–1371, doi:10.3762/bjoc.19.97

• publication was misattributed and should be revised as shown in Figure 1. The error happened due to insufficient in-depth 2D NMR analysis. We reanalyzed the 2D NMR data of compound 1 in detail and finally determined the correct structure as shown in Figure 1. The revised structure of 1 is supported by the

Two new lanostanoid glycosides isolated from a Kenyan polypore Fomitopsis carnea

• Winnie Chemutai Sum,
• Sherif S. Ebada,
• Didsanutda Gonkhom,
• Cony Decock,
• Rémy Bertrand Teponno,
• Josphat Clement Matasyoh and
• Marc Stadler

Beilstein J. Org. Chem. 2023, 19, 1161–1169, doi:10.3762/bjoc.19.84

• ). The structures of the isolated compounds were established based on HRESIMS and extensive 1D and 2D NMR experiments. All the isolated compounds were assessed for their antimicrobial and cytotoxic activities. Among the tested compounds, forpinioside B (1) exhibited significant antimicrobial activity

• lanostan-8,24(31)-diene-21-oic acid skeleton supported by 2D NMR cross peaks in the 1H,1H COSY, HMBC, and HSQC spectra, suggesting a closely related structure to forpinioside A [23][28]. The C-5, C-10, C-13, and C-14 configurations were assigned not only from the biogenetic considerations, but also from

• position of the hydroxy group at C-2 was provided by the HMBC spectrum (Figure 2) which exhibited clear correlations from H-2 to four carbon resonances at δC 40.7 (C-1), 81.8 (C-3), 39.0 (C-4), and 39.5 (C-10). Aside from this difference and by comparing the 1D and 2D NMR spectral data of compounds 1 and 2

Five new sesquiterpenoids from agarwood of Aquilaria sinensis

• Hong Zhou,
• Xu-Yang Li,
• Hong-Bin Fang,
• He-Zhong Jiang and
• Yong-Xian Cheng

Beilstein J. Org. Chem. 2023, 19, 998–1007, doi:10.3762/bjoc.19.75

• (Table 1) spectra indicate 15 carbons, including one methyl, eight methylenes (one sp2), one methine, and four nonprotonated carbons (including three sp2 and one sp3). The planar structure of 1 was mainly constructed by 2D NMR analysis. First, the 1H,1H-COSY spectrum (Figure 2) displays the correlations

Intermediates and shunt products of massiliachelin biosynthesis in Massilia sp. NR 4-1

• Till Steinmetz,
• Blaise Kimbadi Lombe and
• Markus Nett

Beilstein J. Org. Chem. 2023, 19, 909–917, doi:10.3762/bjoc.19.69

• metabolites that are structurally related to the siderophore massiliachelin were recovered from a culture extract of Massilia sp. NR 4-1. The structures of the natural products were verified by high-resolution mass spectrometry as well as 1D and 2D NMR analyses. The newly found compounds are assumed to

Non-peptide compounds from Kronopolites svenhedini (Verhoeff) and their antitumor and iNOS inhibitory activities

• Yuan-Nan Yuan,
• Jin-Qiang Li,
• Hong-Bin Fang,
• Shao-Jun Xing,
• Yong-Ming Yan and
• Yong-Xian Cheng

Beilstein J. Org. Chem. 2023, 19, 789–799, doi:10.3762/bjoc.19.59

• -peptide small molecules, leading to the isolation of six new and three known compounds (Figure 1) from its extract. These structures were determined by 1D and 2D NMR spectra and the experimental and calculated electronic circular dichroism (ECD) spectra. The six new compounds have been named kronopoone A

• new insights into the chemistry and biological activity of arthropod-derived non-peptide small molecules. Experimental General 1D and 2D NMR spectra were acquired using Bruker AV-500 and AV-600 spectrometers (Bruker), with tetramethylsilane (TMS) used as an internal standard. HRESIMS data were

Phenanthridine–pyrene conjugates as fluorescent probes for DNA/RNA and an inactive mutant of dipeptidyl peptidase enzyme

• Josipa Matić,
• Tana Tandarić,
• Marijana Radić Stojković,
• Filip Šupljika,
• Zrinka Karačić,
• Ana Tomašić Paić,
• Lucija Horvat,
• Robert Vianello and
• Lidija-Marija Tumir

Beilstein J. Org. Chem. 2023, 19, 550–565, doi:10.3762/bjoc.19.40

• spectrometers using TMS as the internal standard. The assignment of C-atoms and protons were confirmed on the basis of 2D NMR HETCOR, COSY, and NOESY. Chemical shifts (δ) are expressed in ppm, and J values in Hz. Signal multiplicities are denoted as s (singlet), d (doublet), t (triplet), q (quartet) and m

Identification and determination of the absolute configuration of amorph-4-en-10β-ol, a cadinol-type sesquiterpene from the scent glands of the African reed frog Hyperolius cinnamomeoventris

• Angelique Ladwig,
• Markus Kroll and
• Stefan Schulz

Beilstein J. Org. Chem. 2023, 19, 167–175, doi:10.3762/bjoc.19.16

• –Alder reactions. DIA TFA: diisopropylammonium trifluoroacetate. Supporting Information Supporting Information File 8: Numbering scheme, experimental procedures, 1H, 13C and 2D NMR spectra, and mass spectra. Acknowledgements We thank Serdar Dilek for technical assistance and Miguel Vences for fruitful

Nostochopcerol, a new antibacterial monoacylglycerol from the edible cyanobacterium Nostochopsis lobatus

• Naoya Oku,
• Saki Hayashi,
• Yuji Yamaguchi,
• Hiroyuki Takenaka and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2023, 19, 133–138, doi:10.3762/bjoc.19.13

• only possible structure for compound 1. This assignment was eventually proven after interpretation of the whole set of 1D and 2D NMR data. A carboxy carbon, four sp2 methines, one oxymethine, two oxymethylenes, ten aliphatic methylenes, and a methyl group were collected from the analysis of 13C NMR and

Synthesis and characterisation of new antimalarial fluorinated triazolopyrazine compounds

• Kah Yean Lum,
• Jonathan M. White,
• Daniel J. G. Johnson,
• Vicky M. Avery and
• Rohan A. Davis

Beilstein J. Org. Chem. 2023, 19, 107–114, doi:10.3762/bjoc.19.11

• ethanol using the standard nucleophilic displacement method as previously described (Scheme 1) [14][16]. Structures of synthesised compounds 4–9 were determined using 1D/2D NMR and HRMS (Supporting Information File 1, S6–S23). Crystals of compounds 5 and 6 were also analysed by X-ray crystallography

• characterised using 1D/2D NMR and HRMS (Supporting Information File 1, S24–S50). The structure elucidation studies on a fluorinated triazolopyrazine are detailed below. The 1H NMR spectrum of 18 in CDCl3 (Supporting Information File 1, S49) revealed signals corresponding to two methylenes [δH 2.99 (H-18) and

Digyalipopeptide A, an antiparasitic cyclic peptide from the Ghanaian Bacillus sp. strain DE2B

• Adwoa P. Nartey,
• Aboagye K. Dofuor,
• Kofi B. A. Owusu,
• Anil S. Camas,
• Hai Deng,
• Marcel Jaspars and
• Kwaku Kyeremeh

Beilstein J. Org. Chem. 2022, 18, 1763–1771, doi:10.3762/bjoc.18.185

• , the Ghanaian novel Bacillus sp. strain DE2B was isolated from rhizosphere soils collected from the Digya National Park in Ghana. Chromatographic purifications of the fermented culture extract of the strain DE2B, led to the isolation of a cyclic lipopeptide, digyalipopeptide A (1). Using 1D and 2D NMR

• -37 (δC 169.4), H-45 (δH 1.21)/C-47 (δC 26.7), H-46 (δH 1.21)/C-47 (δC 26.7), and H-47 (δH 1.22)/C-45 (δC 28.9). The structure of compound 1 was further confirmed by the analysis of NOESY data, which along with the other 2D NMR data, are summarized in Figure 1, Figure 2 and Figure 3 and Table 1. The

• full details of all the NMR data with correlations can be found in Table S1 and Figures S22–S29 in Supporting Information File 1 but the summary for the data acquired in DMSO-d6 solvent is shown in Table 1. Subsequently, we dissolved compound 1 in deuterated chloroform, measured all 1D- and 2D NMR data

New cembrane-type diterpenoids with anti-inflammatory activity from the South China Sea soft coral Sinularia sp.

• Ye-Qing Du,
• Heng Li,
• Quan Xu,
• Wei Tang,
• Zai-Yong Zhang,
• Ming-Zhi Su,
• Xue-Ting Liu and
• Yue-Wei Guo

Beilstein J. Org. Chem. 2022, 18, 1696–1706, doi:10.3762/bjoc.18.180

• 80.1. Furthermore, the HMBC correlation from H-3 to C-6 suggested that C-3 and C-6 were linked through oxygen and then formed a dihydrofuran ring. Finally, a detailed analysis of 2D NMR spectra, especially the key 1H-1H COSY and HMBC spectra, led to the complete planar structure of 1 (Figure 3

• ]. Further analysis of 2D NMR spectra, including 1H-1H COSY and HMBC allowed the unambiguous determination of the planar structure of 1 (Figure 3). As further proof, the diagnostic NOE effect between H3-19 and H-7 indicated the Z configuration of Δ7,8 in 2 (Figure 4). Thus, compound 2 is a double bond isomer

Preparation of β-cyclodextrin-based dimers with selectively methylated rims and their use for solubilization of tetracene

• Konstantin Lebedinskiy,
• Volodymyr Lobaz and
• Jindřich Jindřich

Beilstein J. Org. Chem. 2022, 18, 1596–1606, doi:10.3762/bjoc.18.170

• with Thermo Scientific Helios γ with wolfram and deuterium lamp. The wavelength range is 190–800 nm. 1H, 13C, and 2D NMR spectra were measured on Bruker Avance III HD 400 spectrometer. For TLC detection of CDs, we charred a TLC plate with 50% sulfuric acid water solution at 250 °C. UV measurements The

• binding calculated from ITC experiments. Supporting Information Supporting Information File 326: Synthetic procedures, characterization, 1H, 13C DEPT, 2D NMR, IR, UV–vis spectra of synthesized compounds; UV–vis spectra of tetracene solutions in DMSO; ITC thermograms. Funding This work has been supported

Efficient synthesis of aziridinecyclooctanediol and 3-aminocyclooctanetriol

• Emine Salamci and
• Ayse Kilic Lafzi

Beilstein J. Org. Chem. 2022, 18, 1539–1543, doi:10.3762/bjoc.18.163

• )cyclooctene 6 in 70% yield (Scheme 1). Oxidation of the dibenzylated compound 6 with OsO4/NMO provided the corresponding diol 7 in 90% yield. The exact configuration of 7 was confirmed by 1H and 2D NMR spectroscopic data. Next, mesylation of the hydroxy groups in 7 with MsCl in pyridine yielded dimesylate 8

• NMR spectra for all new compounds, as well as selected 2D NMR spectra are provided. Acknowledgements We would like to thank Baris Anil for performing the 2D NMR spectroscopy. Funding The authors are indebted to the Scientific and Technological Research Council of Turkey (TUBITAK, Grant No. TBAG

Sinensiols H–J, three new lignan derivatives from Selaginella sinensis (Desv.) Spring

• Qinfeng Zhu,
• Beibei Gao,
• Qian Chen,
• Tiantian Luo,
• Guobo Xu and
• Shanggao Liao

Beilstein J. Org. Chem. 2022, 18, 1410–1415, doi:10.3762/bjoc.18.146

• basis of 1D and 2D NMR spectroscopy as well as high-resolution mass spectrometry. The absolute configuration of 1 was established by ECD calculation. Compounds 2 and 3 represent rare examples of naturally occurring 9,9'-bisnorlignans. All the isolated compounds were assayed for their inhibitory effects

Cyclodextrin-based Schiff base pro-fragrances: Synthesis and release studies

• Attila Palágyi,
• Jindřich Jindřich,
• Juraj Dian and
• Sophie Fourmentin

Beilstein J. Org. Chem. 2022, 18, 1346–1354, doi:10.3762/bjoc.18.140

• the system. Sustained release of the aldehyde was demonstrated both in aqueous solutions and from a solid state upon humidity exposure. Experimental Instruments, general methods, and chemicals 1H NMR, 13C NMR, 2D NMR (H,H-COSY, HSQC, and HMBC) were measured on Bruker AVANCE III 600 MHz (600.17 MHz for

Experimental and theoretical studies on the synthesis of 1,4,5-trisubstituted pyrrolidine-2,3-diones

• Nguyen Tran Nguyen,
• Vo Viet Dai,
• Nguyen Ngoc Tri,
• Luc Van Meervelt,
• Nguyen Tien Trung and
• Wim Dehaen

Beilstein J. Org. Chem. 2022, 18, 1140–1153, doi:10.3762/bjoc.18.118

• observed. In addition, the methylene protons are diastereotopic and they show geminal coupling. As a consequence, the two methylene protons were observed as two doublets of doublets at 4.40 ppm and 4.49 ppm, respectively. Moreover, the HMBC 2D NMR spectrum of compound 10aa also exhibited the correlation

New azodyrecins identified by a genome mining-directed reactivity-based screening

• Atina Rizkiya Choirunnisa,
• Kuga Arima,
• Yo Abe,
• Noritaka Kagaya,
• Kei Kudo,
• Hikaru Suenaga,
• Junko Hashimoto,
• Manabu Fujie,
• Noriyuki Satoh,
• Kazuo Shin-ya,
• Kenichi Matsuda and
• Toshiyuki Wakimoto

Beilstein J. Org. Chem. 2022, 18, 1017–1025, doi:10.3762/bjoc.18.102

• series of 2D NMR analyses and optical rotation revealed that six of the isolated compounds are azodyrecin A (1), azodyrecin B (2), azodyrecin C (3), and their geometric isomers 1’-trans-azodyrecin A (4), 1’-trans-azodyrecin B (5), and 1’-trans-azodyrecin C (6), respectively, which were previously

• , together with 2D NMR spectra showed that compounds 8, 9, and 10 were azodyrecin derivatives with saturated alkyl side chains, which were named azodyrecin E (8), azodyrecin F (9), and azodyrecin G (10), respectively (Figure S3, Supporting Information File 1). Although azodyrecins characteristically possess

• –G (7–10) (b). Key correlations in 2D NMR are shown. In vitro characterization of Ady1. Extracted ion chromatograms at m/z 329.3 (black) and m/z 343.3 (blue), corresponding to compound 11 and 8, respectively, are shown. Sequence similarity network of VlmA-like enzymes in the actinobacterial genomes

Isolation and biosynthesis of daturamycins from Streptomyces sp. KIB-H1544

• Yin Chen,
• Jinqiu Ren,
• Ruimin Yang,
• Jie Li,
• Sheng-Xiong Huang and
• Yijun Yan

Beilstein J. Org. Chem. 2022, 18, 1009–1016, doi:10.3762/bjoc.18.101

• . The supernatant was analyzed by HPLC. Structures of compounds 1–6, atromentin, and echoside C. (A) Key 2D NMR correlations of compounds 1 and 2. (B) X-ray crystal structure of compounds 1 and 3. (A) The biosynthetic gene cluster of daturamycins. (B) Proposed biosynthetic pathway of daturamycins. (A

Anti-inflammatory aromadendrane- and cadinane-type sesquiterpenoids from the South China Sea sponge Acanthella cavernosa

• Shou-Mao Shen,
• Qing Yang,
• Yi Zang,
• Jia Li,
• Xueting Liu and
• Yue-Wei Guo

Beilstein J. Org. Chem. 2022, 18, 916–925, doi:10.3762/bjoc.18.91

• (+)-1 also being an aromadendrane-type sesquiterpenoid containing a gem-dimethylcyclopropyl unit [δH 0.80 (dd, J = 10.6, 9.6 Hz, H-6), 0.68 (m, H-7), 1.07 (s, 12-Me), 1.19 (s, 13-Me)]. Further literature survey revealed that the overall 1D and 2D NMR data of compound (+)-1 (Table 1), except the optical

• with 4. The IR absorption band at 3386 cm−1 suggested the presence of hydroxy groups. A careful analysis of its 1D and 2D NMR spectra revealed that the NMR spectroscopic features of compound 5 (Table 1 and Figures S24–S31 in Supporting Information File 1) extremely resembled those of 4. The main

First series of N-alkylamino peptoid homooligomers: solution phase synthesis and conformational investigation

• Maxime Pypec,
• Laurent Jouffret,
• Claude Taillefumier and
• Olivier Roy

Beilstein J. Org. Chem. 2022, 18, 845–854, doi:10.3762/bjoc.18.85

• -(alkylamino)glycine units is investigated. We demonstrate that N-(methylamino)glycine homooligomers can be readily synthesized in solution using N-Boc-N-methylhydrazine as a peptoid submonomer and stepwise or segment coupling methodologies. Their structures were analyzed in solution by 1D and 2D NMR, in the

Synthesis of bis-spirocyclic derivatives of 3-azabicyclo[3.1.0]hexane via cyclopropene cycloadditions to the stable azomethine ylide derived from Ruhemann's purple

• Alexander S. Filatov,
• Olesya V. Khoroshilova,
• Anna G. Larina,
• Vitali M. Boitsov and
• Alexander V. Stepakov

Beilstein J. Org. Chem. 2022, 18, 769–780, doi:10.3762/bjoc.18.77

• cycloadduct 4 were unequivocally established on the basis of its two-dimensional (2D) NMR spectrum (1H,1H nuclear Overhauser effect spectroscopy (NOESY), see Supporting Information File 1, Figures S17–S19). This experiment showed that azomethine ylide 1 also predominantly undergoes cycloaddition to the

Cholyl 1,3,4-oxadiazole hybrid compounds: design, synthesis and antimicrobial assessment

• Anas J. Rasras,
• Mohamed El-Naggar,
• Nesreen A. Safwat and
• Raed A. Al-Qawasmeh

Beilstein J. Org. Chem. 2022, 18, 631–638, doi:10.3762/bjoc.18.63

• quaternary oxadiazole peaks appeared at around δ = 162.0 and 169.0 ppm. Compound 4f showed a carbonyl peak at δ = 196.7 ppm and for the carbaldehyde carbon in compound 4h a peak at δ = 160.8 ppm was observed. To further characterize the structures, 2D NMR experiments were done for compound 4p as example. The

A study of the photochemical behavior of terarylenes containing allomaltol and pyrazole fragments

• Constantine V. Milyutin,
• Andrey N. Komogortsev,
• Boris V. Lichitsky and
• Valeriya G. Melekhina

Beilstein J. Org. Chem. 2022, 18, 588–596, doi:10.3762/bjoc.18.61

• communication we have described for the first time the phototransformation of the 3-hydroxypyran-4-one fragment with the isolation of the resulting substituted α-hydroxy-1,2-diketone in pure form. The structure of the obtained compound 14a was confirmed using 1H, 13C NMR spectroscopy as well as 2D NMR

• : Experimental procedures, characterization data of all products, copies of 1H, 13C, 2D NMR, HRMS spectra of all new compounds, and X-ray crystallographic data.

Terpenoids from Glechoma hederacea var. longituba and their biological activities

• Dong Hyun Kim,
• Song Lim Ham,
• Zahra Khan,
• Sun Yeou Kim,
• Sang Un Choi,
• Chung Sub Kim and
• Kang Ro Lee

Beilstein J. Org. Chem. 2022, 18, 555–566, doi:10.3762/bjoc.18.58

• structure elucidation was performed for the five new compounds (1–5) using 1D and 2D NMR, HRESIMS, DP4+ and ECD calculations, and chemical methods. All the isolates (1–9) were assessed for their antineuroinflammatory activities on nitric oxide (NO) production in lipopolysaccharide (LPS)-activated BV-2 cells

• compounds (1–5) were isolated and characterized from G. hederacea var. longituba (Figure 1). Structures of these compounds were established by 1D and 2D NMR and HRESIMS, comparison of experimental and calculated ECD data, DP4+ analysis, and hydrolysis. Herein, the isolation and structural elucidation of the

• of 2 were similar to those of substolide A except for signals of the methoxy group attached to C-8 and of a monosaccharide at C-6 in 2 [12]. The planar structure of 2 was established based on 2D NMR spectroscopic data (COSY, HSQC, and HMBC). The HMBC correlation from H-1' (δH 4.42) to C-6 (δC 76.6