Iron-catalyzed domino coupling reactions of π-systems

• Austin Pounder and
• William Tam

Beilstein J. Org. Chem. 2021, 17, 2848–2893, doi:10.3762/bjoc.17.196

Synthetic strategies toward 1,3-oxathiolane nucleoside analogues

• Umesh P. Aher,
• Dhananjai Srivastava,
• Girij P. Singh and
• Jayashree B. S

Beilstein J. Org. Chem. 2021, 17, 2680–2715, doi:10.3762/bjoc.17.182

• at a concentration nontoxic to the host cells. In 1993, Kraus [51] developed the phosphonate analogue 100 of 3'-thia-2',3’-dideoxycytidine. The Lewis acid-mediated N-glycosylation reaction of the phosphonate analogue 46 of an oxathiolane precursor with an appropriate nucleobase afforded the

• phosphonate analogue 100 (Scheme 44). To obtain both the α- and β-anomers for biological assessment, TiCl4 was used as a Lewis acid in the glycosylation procedure in place of SnCl4

Strategies for the synthesis of brevipolides

• Yudhi D. Kurniawan and
• A'liyatur Rosyidah

Beilstein J. Org. Chem. 2021, 17, 2399–2416, doi:10.3762/bjoc.17.157

• through Horner–Wardsworth–Emmons olefination of the known precursors 111 and 112, which are prepared from ᴅ-mannitol and ʟ-lactic acid methyl ester, respectively. The synthesis commenced with the reaction between aldehyde 111 and phosphonate ester 112 using Ba(OH)2·8H2O to provide the unsaturated ketone

Cationic oligonucleotide derivatives and conjugates: A favorable approach for enhanced DNA and RNA targeting oligonucleotides

• Mathias B. Danielsen and
• Jesper Wengel

Beilstein J. Org. Chem. 2021, 17, 1828–1848, doi:10.3762/bjoc.17.125

• (Table 8) [106]. In contrast to the dinucleotide which was synthesized by solution phase chemistry [105], the modified ONs were synthesized on solid-support employing H-phosphonate chemistry, followed by the oxidative coupling with the appropriate diamines to give the desired N-ethyl-2-morpholino

• with slight variations. Fathi, Cook and co-workers successfully introduced aminomethyl phosphonate [113] (69) and aminoethyl phosphonate [114] (70) linkages (Table 8). The introduction of the stereo-pure aminomethyl phosphonate linkage was achieved by preparing the appropriate stereo-pure (Rp or Sp

• ) thymidine dinucleotide linked through the 3’-5’ oxygen atoms modified with the phthalimidomethyl phosphonate linkage [113]. Later, a halogenated phthalimide protection was employed for the synthesis of the amidoethyl phosphonate variant [114]. The desired dinucleotides were phosphitylated and incorporated

Development of N-F fluorinating agents and their fluorinations: Historical perspective

• Teruo Umemoto,
• Yuhao Yang and
• Gerald B. Hammond

Beilstein J. Org. Chem. 2021, 17, 1752–1813, doi:10.3762/bjoc.17.123

• ], electron-rich alkenes (entry 3) [65][66], alkyl sulfides (entry 4) [65][67], 1,3-dicarbonyl compounds [65][68], phosphonate esters (entry 5) [65], steroidal silyl enol ethers and enol acetates (entry 6) [65], pyrimidine bases and nucleosides (entry 7) [67][69], phenylalkynes (entry 8) [70], anthraquinones

Chemical approaches to discover the full potential of peptide nucleic acids in biomedical applications

• Nikita Brodyagin,
• Martins Katkevics,
• Venubabu Kotikam,
• Christopher A. Ryan and
• Eriks Rozners

Beilstein J. Org. Chem. 2021, 17, 1641–1688, doi:10.3762/bjoc.17.116

• phosphono-PNAs retained the stability against nucleases. In another study, conjugation with glutamine phosphonate or lysine bis-phosphonate amino acid derivatives introduced up to twelve negative charges (phosphonate moieties) into PNAs [91]. The negative charges allowed cationic lipid-mediated delivery of

Beyond ribose and phosphate: Selected nucleic acid modifications for structure–function investigations and therapeutic applications

• Christopher Liczner,
• Kieran Duke,
• Gabrielle Juneau,
• Martin Egli and
• Christopher J. Wilds

Beilstein J. Org. Chem. 2021, 17, 908–931, doi:10.3762/bjoc.17.76

• '-aminonucleoside couples to the 5'-H-phosphonate in the presence of a base (Scheme 1) [64]. In comparison with natural phosphodiester oligonucleotides, these modified oligonucleotides display improved nuclease resistance and an enhanced duplex thermal stability of 2.3–2.6 °C per linkage independent of nucleotide

Synthetic strategies of phosphonodepsipeptides

• Jiaxi Xu

Beilstein J. Org. Chem. 2021, 17, 461–484, doi:10.3762/bjoc.17.41

• and phosphonate-linked analogues of naturally occurring peptides. They are more stable than phosphonopeptides and have been widely applied as enzyme inhibitors, haptens for the production of antibodies, biological agents, and prodrugs. The synthetic strategies towards phosphonodepsipeptides are

• phosphonopeptides are peptides with a phosphonamidate bond instead of an amide bond whereas the phosphonodepsipeptides are peptides with a phosphonate linkage instead of an amide. Phosphonodepsipeptides are structurally close analogues of depsipeptides (Figure 1). In general, phosphonodepsipeptides are more stable

• than the corresponding phosphonopeptides because the phosphonate bond is more inert than a phopshonamidate bond. Phosphonodepsipeptides are widely used as enzyme inhibitors [6][7][8][9][10], haptens for inducing catalytic antibodies [11][12], and produgs [8][9][13]. They have potential applications as

Unexpected rearrangements and a novel synthesis of 1,1-dichloro-1-alkenones from 1,1,1-trifluoroalkanones with aluminium trichloride

• Beatrice Lansbergen,
• Catherine S. Meister and
• Michael C. McLeod

Beilstein J. Org. Chem. 2021, 17, 404–409, doi:10.3762/bjoc.17.36

• step with PPh3 and CHCl3 [11], CCl4 [12], or with the phosphonate reagent LiCCl2-P(O)(OEt)2 [13][14] (Figure 2a). Alternatively, the aldehydes are converted to trichloromethyl carbinols 3 using various methodologies [15][16][17], followed by acetylation and elimination to provide the desired

1,2,3-Triazoles as leaving groups in S_NAr–Arbuzov reactions: synthesis of C6-phosphonated purine derivatives

• Kārlis-Ēriks Kriķis,
• Irina Novosjolova,
• Anatoly Mishnev and
• Māris Turks

Beilstein J. Org. Chem. 2021, 17, 193–202, doi:10.3762/bjoc.17.19

• event. The SNAr–Arbuzov reaction of 2,6-bistriazolylpurines follows the general regioselectivity pattern of the C6-position being more reactive towards substitution, which was unambiguously proved by X-ray analysis of diethyl (9-heptyl-2-(4-phenyl-1H-1,2,3-triazol-1-yl)-9H-purin-6-yl)phosphonate

• . Keywords: Arbuzov reaction; 2,6-bistriazolylpurines; nucleophilic aromatic substitution; purinylphosphonates; Introduction Acyclic nucleoside phosphonates (ANPs) are an important compound class due to their biological activity profile [1][2][3][4][5][6]. Compounds bearing a phosphonate moiety in their N9

• (Scheme 1) [12]. In 2011, a single example of a C6-phosphonate, B (X = NH2; R1 = 2’-C-methylribose; R2 = Et), was synthesized among other compounds as a potential anti-hepatitis C virus agent and showed 19% inhibition at 10 μM in Huh7 cells (Scheme 1) [13]. Additionally, there are a few examples of C8

Progress in the total synthesis of inthomycins

• Bidyut Kumar Senapati

Beilstein J. Org. Chem. 2021, 17, 58–82, doi:10.3762/bjoc.17.7

• inthomycins [36]. These triene moieties are a sub-unit of the oxazolomycin class of antibiotics. To prepare the phenyl analogue of racemic inthomycin C (rac-3), at first, the phosphonate 28 was prepared using a Claisen condensation of ethyl propionate (25) followed by methylation of 26a, treatment with

• phosphonate reagent 50 proceeded stereoselectively to give ester 51 in excellent yield (94%). Subsequent DIBAL-H reduction of ester 51 followed by tetrapropylammonium perruthenate (TPAP) oxidation afforded aldehyde (Z,E)-52 as a single isomer in 83% yield over two steps. The asymmetric aldol reaction aldehyde

• by oxidation of the resulting alcohol using the Ley-Griffith TPAP procedure [47][48]. Treatment of aldehyde 57 with the Ando phenoxy phosphonate 58a [49] gave the desired (Z,Z)-diene 59 as the major product (59/60 = 87:13). DIBAL-H reduction of 59 allowed the isolation of (Z,Z)-isomeric alcohol

Silver-catalyzed synthesis of β-fluorovinylphosphonates by phosphonofluorination of aromatic alkynes

• Yajing Zhang,
• Qingshan Tian,
• Guozhu Zhang and
• Dayong Zhang

Beilstein J. Org. Chem. 2020, 16, 3086–3092, doi:10.3762/bjoc.16.258

• extremely low yield. Another H-phosphonate, namely dimethyl phosphite, was a suitable substrate for this transformation and provided the products 3 in good yield (Scheme 3). The well-known radical-trapping reagent 2,2,6,6-tetramethylpiperidine-N-oxyl (TEMPO) was used to gain an insight into the reaction

NMR Spectroscopy of supramolecular chemistry on protein surfaces

• Peter Bayer,
• Anja Matena and
• Christine Beuck

Beilstein J. Org. Chem. 2020, 16, 2505–2522, doi:10.3762/bjoc.16.203

• negatively charged sulfonate [20][21][22][24][25][27][28][29][30][31][32][34][36][37] or phosphonate [23][33][35] substituents, the aliphatic side chain of the amino acid lines the aromatic bowl-like structure of the calixarene, while the positively charged end group being situated between the sulfonate or

• phosphonate groups. While sulfonato-calix[4]arenes can bind unmodified Lys and Arg residues, their strength lies in the recognition and even tighter binding of methylated lysines [29]. Their binding affinity increases 70-fold from unmethylated over mono- and di- to trimethylated lysine, as every methyl group

Convenient access to pyrrolidin-3-ylphosphonic acids and tetrahydro-2H-pyran-3-ylphosphonates with multiple contiguous stereocenters from nonracemic adducts of a Ni(II)-catalyzed Michael reaction

• Alexander N. Reznikov,
• Dmitry S. Nikerov,
• Anastasiya E. Sibiryakova,
• Victor B. Rybakov,
• Evgeniy V. Golovin and
• Yuri N. Klimochkin

Beilstein J. Org. Chem. 2020, 16, 2073–2079, doi:10.3762/bjoc.16.174

• presence of Pd/C. However, phosphonate 7 was unstable: already during its isolation, it was partially transformed into compounds 8 and 9. It can be assumed that N-alkylation by the phosphoryl group occurs [47][48][49]. To avoid this undesirable process, the product 7 was formylated before its isolation

• carbonyl leads to a mixture of unidentified products. At the next stage of this work, the Henry/acetalization reaction with phosphonate 6e was studied. To optimize the reaction conditions various bases and solvents were used. The reaction of phosphonate 6e with propionic aldehyde 12a was used as a model

• detected in the reaction even after 72 h in the presence of 1 equiv of potassium phosphate or carbonate with TEBAC (0.1 equiv, Table 1, entries 4 and 5). If potassium fluoride or cesium carbonate were used as a base, the initial phosphonate 6e was consumed in a few hours, but unidentified products were

Metal-free synthesis of phosphinoylchroman-4-ones via a radical phosphinoylation–cyclization cascade mediated by K₂S₂O₈

• Qiang Liu,
• Weibang Lu,
• Guanqun Xie and
• Xiaoxia Wang

Beilstein J. Org. Chem. 2020, 16, 1974–1982, doi:10.3762/bjoc.16.164

• synthesize a series of phosphine oxide and phosphonate-functionalized chroman-4-ones. Unfortunately, the preparation of the substrates involved a Rh-catalyzed hydrophosphinylation of a protected functional alkyne, and the subsequent deprotection with Hg(O2CCF3)2, which is not environmentally benign (Scheme

•  1a). Besides, in 2016 Li’s group [28] reported a silver-catalyzed straightforward approach for the synthesis of phosphonate-functionalized chroman-4-ones via a phosphoryl radical-initiated cascade cyclization of 2-(allyloxy)arylaldehydes using K2S2O8 as an oxidant, however, diphenylphosphine oxide

• furnishing the anticipated product 3ag in 58% yield. Furthermore, 1-naphthyl-DPPO (2h) was also suitable for this transformation, and afforded the expected product 3ah in 50% yield. The reaction between diethyl phosphonate (2j) and 1a proceeded less efficiently under the conditions and a low yield of 3aj was

Synthesis of 3(2)-phosphonylated thiazolo[3,2-a]oxopyrimidines

• Ksenia I. Kaskevich,
• Anastasia A. Babushkina,
• Vladislav V. Gurzhiy,
• Dmitrij M. Egorov,
• Nataly I. Svintsitskaya and
• Albina V. Dogadina

Beilstein J. Org. Chem. 2020, 16, 1947–1954, doi:10.3762/bjoc.16.161

• containing practically significant heteroaromatic rings and a biologically active and hydrolysis-resistant phosphonate group, as it has been reported that the combination of several pharmacophore fragments in one molecule can lead to a synergistic increase in biological activity or an additional variety of

Selective preparation of tetrasubstituted fluoroalkenes by fluorine-directed oxetane ring-opening reactions

• Clément Q. Fontenelle,
• Thibault Thierry,
• Romain Laporte,
• Emmanuel Pfund and
• Thierry Lequeux

Beilstein J. Org. Chem. 2020, 16, 1936–1946, doi:10.3762/bjoc.16.160

• VIII was observed due to the difficulty of phosphorylation of the substrate by kinases [16]. The first kinase phosphorylation step is generally rate limiting, and the prior introduction of a phosphate or phosphonate function can circumvent this problem. The preparation of diols VIII was realized by

• precursors of ACN (VII) bearing different functional groups (Scheme 9). A particular focus was applied to the preparation of the phosphonate 29, a precursor of VII that is not accessible from diol VIII. First, starting from pure alkene E-9, the introduction of a protected alcohol as a mimic of the naturally

• occurring 3’-hydroxy group was achieved by allylic bromine displacement with AcOK to efficiently afford alkene 26. The phosphonate was introduced in three steps through the formation of intermediate mesylate 27. This mesylate was progressed without purification, albeit contaminated (10%) with the

Nonenzymatic synthesis of anomerically pure, mannosyl-based molecular probes for scramblase identification studies

• Giovanni Picca,
• Markus Probst,
• Simon M. Langenegger,
• Oleg Khorev,
• Peter Bütikofer,
• Anant K. Menon and
• Robert Häner

Beilstein J. Org. Chem. 2020, 16, 1732–1739, doi:10.3762/bjoc.16.145

• . Reports of using phosphoramidite chemistry for the preparation of carbohydrates via the anomeric position are relatively rare [18][19][20][21][22][23]. Alternatively, the H-phosphonate approach has been used to convert carbohydrates into phosphate-linked derivatives at the anomeric center [24][25][26][27

Pauson–Khand reaction of fluorinated compounds

• Jorge Escorihuela,
• Daniel M. Sedgwick,
• Alberto Llobat,
• Mercedes Medio-Simón,
• Pablo Barrio and
• Santos Fustero

Beilstein J. Org. Chem. 2020, 16, 1662–1682, doi:10.3762/bjoc.16.138

• . In contrast, the phosphorus analog 29d was obtained in 45% yield, which could be explained by favorable electronic and steric effects of the phosphonate group. In the same work, the authors also evaluated the PKR of CF3-substituted enynes 30. In this case, bicyclic products 31 were formed as mixtures

Facile synthesis of 7-alkyl-1,2,3,4-tetrahydro-1,8-naphthyridines as arginine mimetics using a Horner–Wadsworth–Emmons-based approach

• Rhys A. Lippa,
• John A. Murphy and
• Tim N. Barrett

Beilstein J. Org. Chem. 2020, 16, 1617–1626, doi:10.3762/bjoc.16.134

• , affording phosphoramidate 9 in low yield, indicating good leaving group ability of the stabilised tetrahydronaphthyridine anion. No formation of phosphonate 10 was detected (Scheme 3). It was proposed that a deprotonation of 7-methyl-1,2,3,4-tetrahydro-1,8-naphthyridine (11) with two equivalents of sec-BuLi

• would afford phosphonate 12 upon quenching with diethyl chlorophosphate via formation of the dianion. This could then be used in a subsequent Horner–Wadsworth–Emmons reaction to construct the carbon skeleton of amine 6. Upon the addition of a single equivalent of diethyl chlorophosphate, phosphoramidate

• 13 was obtained exclusively at both −42 and −78 °C. The addition of two equivalents of the chlorophosphate yielded diphosphorylated compound 7, albeit in poor yield (Scheme 4). The deprotonation of phosphonate 7 and subsequent reaction with aldehyde 5, formed in situ by oxidation of alcohol 14 using

The McKenna reaction – avoiding side reactions in phosphonate deprotection

• Katarzyna Justyna,
• Joanna Małolepsza,
• Damian Kusy,
• Waldemar Maniukiewicz and
• Katarzyna M. Błażewska

Beilstein J. Org. Chem. 2020, 16, 1436–1446, doi:10.3762/bjoc.16.119

• phosphonate esters into bis(trimethylsilyl)esters, which are then easily converted into the target acids. However, the versatile character of the McKenna reaction is not always used to its full extent, due to formation of side products. Herein, demonstrated by using model examples we have not only analyzed

• . Keywords: bromotrimethylsilane; McKenna reaction; organophosphorus acid; oxazole; phosphonate ester; Introduction The McKenna reaction is a tool for the synthesis of organophosphorus acids from their esters and known for over 40 years [1][2]. The importance of this class of compounds is widely recognized

• reagent of choice for phosphonate ester cleavage, compared with its more and less reactive analogs, iodotrimethylsilane (ITMS) [11][12] and chlorotrimethylsilane (CTMS) [13], respectively. While being one of the most popular methods for the deprotection of organophosphorus esters, the McKenna reaction may

Highly selective Diels–Alder and Heck arylation reactions in a divergent synthesis of isoindolo- and pyrrolo-fused polycyclic indoles from 2-formylpyrrole

• Carlos H. Escalante,
• Eder I. Martínez-Mora,
• Carlos Espinoza-Hicks,
• Alejandro A. Camacho-Dávila,
• Fernando R. Ramos-Morales,
• Francisco Delgado and
• Joaquín Tamariz

Beilstein J. Org. Chem. 2020, 16, 1320–1334, doi:10.3762/bjoc.16.113

• phosphonates 15a–c to afford derivatives 8a–f in high yields (Table 1, entries 1–6). For the synthesis of pyrroles 8g,h (R1 = Ac), pyrroles 13c and 13e were subjected to condensation reactions at a higher temperature, with acetone as the nucleophile (instead the phosphonate 15) in the presence of KOH as the

Synthesis, antiinflammatory activity, and molecular docking studies of bisphosphonic esters as potential MMP-8 and MMP-9 inhibitors

• Abimelek Cortes-Pacheco,
• María Adelina Jiménez-Arellanes,
• Francisco José Palacios-Can,
• José Antonio Valcarcel-Gamiño,
• Rodrigo Said Razo-Hernández,
• María del Carmen Juárez-Vázquez,
• Adolfo López-Torres and
• Oscar Abelardo Ramírez-Marroquín

Beilstein J. Org. Chem. 2020, 16, 1277–1287, doi:10.3762/bjoc.16.108

• expected, 4–6 could bind the Zn2+ ion in a monodentate fashion through the oxygen atom double bonded to the phosphorus atom (P=O) of one of the phosphonate moieties, as reported in the literature for other structures [38][39]. Only for 3, zinc chelation was observed through the oxygen atom double bonded to

• of the phosphonate moieties, while 5 and 6 had interactions through the C=O oxygen atom of the ester group. Because the interactions of the benzyl group of 5 and 6, respectively, with the Phe110 residue present at the catalytic site through π–π interactions are possible, the orientation of the

• molecules inside the catalytic site allowed the coordination through the ester groups rather than through the phosphonate moieties. The calculated distances from the Zn2+ ion and the different sites at the ligand and the protein are summarized in Table 6. In Figure 4, a schematic representation of the

Copper-based fluorinated reagents for the synthesis of CF₂R-containing molecules (R ≠ F)

• Louise Ruyet and
• Tatiana Besset

Beilstein J. Org. Chem. 2020, 16, 1051–1065, doi:10.3762/bjoc.16.92

• -generated copper-based CF2PO(OEt)2 reagent As a bioisostere of the phosphonate group [47], a lot of attention was paid to the difluoromethylphosphonate residue as well as the development of efficient methodologies to introduce it onto molecules [48]. In that context, main contributions were made by the

Fluorinated phenylalanines: synthesis and pharmaceutical applications

• Laila F. Awad and
• Mohammed Salah Ayoup

Beilstein J. Org. Chem. 2020, 16, 1022–1050, doi:10.3762/bjoc.16.91

• )-2,5-difluorophenylalanine derivative 115 was carried out by coupling the commercially available aldehyde 55 and N-Boc phosphonate glycinate 112 to generate the enamino ester intermediate 113. The asymmetric hydrogenation of this enamine afforded the N-Boc-protected (R)-2,5-difluorophenylalanine ester