Thiadiazino-indole, thiadiazino-carbazole and benzothiadiazino-carbazole dioxides: synthesis, physicochemical and early ADME characterization of representatives of new tri-, tetra- and pentacyclic ring systems and their intermediates

• Gyöngyvér Pusztai,
• László Poszávácz,
• Anna Vincze,
• András Marton,
• Ahmed Qasim Abdulhussein,
• Judit Halász,
• András Dancsó,
• Gyula Simig,
• György Tibor Balogh and
• Balázs Volk

Beilstein J. Org. Chem. 2025, 21, 2220–2233, doi:10.3762/bjoc.21.169

• % reference for clearance calculations. HPLC–MS analysis. The semi-quantitative determination of test compounds was carried out using a Waters Xevo G2-XS QToF mass spectrometer equipped with an electrospray ionization (ESI) source operating in positive ion mode. Chromatographic separation was performed on a

C2 to C6 biobased carbonyl platforms for fine chemistry

• Jingjing Jiang,
• Muhammad Noman Haider Tariq,
• Florence Popowycz,
• Yanlong Gu and
• Yves Queneau

Beilstein J. Org. Chem. 2025, 21, 2103–2172, doi:10.3762/bjoc.21.165

• hydroxy group at the α-position of the carboxyl group (Scheme 10) [38]. Yang and his team reported a metal-free catalytic system for the conversion of LA to PA (Scheme 10a). The use of NaI as catalyst and PA itself as solvent allowed to simplify the product separation process, giving yields up to 99

• from homogeneous catalysts such as mineral acids, organic acids, metal salts (with high availability and low costs) to heterogeneous ones such as zeolites, metal oxides, sulfonated polymers, carbon-based solid acids. The latter allow to overcome the problems of separation encountered with homogeneous

Further elaboration of the stereodivergent approach to chaetominine-type alkaloids: synthesis of the reported structures of aspera chaetominines A and B and revised structure of aspera chaetominine B

• Jin-Fang Lü,
• Jiang-Feng Wu,
• Jian-Liang Ye and
• Pei-Qiang Huang

Beilstein J. Org. Chem. 2025, 21, 2072–2081, doi:10.3762/bjoc.21.162

• aspera chaetominine B. Keywords: epoxidation; selective epimerization; stereodivergent synthesis; structural revision; tandem reaction; Introduction In contemporary organic chemistry, due to the widespread application of modern separation and analytical techniques, the structural elucidation and

α-Ketoglutaric acid in Ugi reactions and Ugi/aza-Wittig tandem reactions

• Vladyslav O. Honcharov,
• Yana I. Sakhno,
• Olena H. Shvets,
• Vyacheslav E. Saraev,
• Svitlana V. Shishkina,
• Tetyana V. Shcherbakova and
• Valentyn A. Chebanov

Beilstein J. Org. Chem. 2025, 21, 2021–2029, doi:10.3762/bjoc.21.157

• precipitation from non-polar solvents such as hexane and toluene did not lead to a complete separation of quinoxalinones 9 and Ph3PO. We attribute this to the ability of Ph3PO to form a strong hydrogen bond between the phosphoryl oxygen and a proton from the donor group of the second molecule [56][57][58], in

Measuring the stereogenic remoteness in non-central chirality: a stereocontrol connectivity index for asymmetric reactions

• Ivan Keng Wee On,
• Yu Kun Choo,
• Sambhav Baid and
• Ye Zhu

Beilstein J. Org. Chem. 2025, 21, 1995–2006, doi:10.3762/bjoc.21.155

• substituents. Intuitively, the intrinsic spatial separation among prochiral stereogenic elements, the reactive sites, and the stereochemical-defining substituents makes stereoinduction for non-central chirality using a chiral catalyst or reagent particularly challenging. However, a quantitative

Synthesis of N-doped chiral macrocycles by regioselective palladium-catalyzed arylation

• Shuhai Qiu and
• Junzhi Liu

Beilstein J. Org. Chem. 2025, 21, 1917–1923, doi:10.3762/bjoc.21.149

• existence of inherent chirality for both MC1 and MC3, chiral resolutions using chiral high-performance liquid chromatography (HPLC) were performed. Due to insufficient solubility, MC3 failed in chiral separation via preparative chiral columns. Fortunately, two enantiomers of MC1 were successfully isolated

Chiral phosphoric acid-catalyzed asymmetric synthesis of helically chiral, planarly chiral and inherently chiral molecules

• Wei Liu and
• Xiaoyu Yang

Beilstein J. Org. Chem. 2025, 21, 1864–1889, doi:10.3762/bjoc.21.145

• cyclocondensation between these two components enabled by CPA catalysts yielded the inherently chiral DDDs 64 with good to high enantioselectivity (Scheme 18). While a number of reactions did not initially yield satisfactory enantioselectivity, facile phase separation during the workup process removed the less

• inherently chiral eight-membered azaheterocycles 72 with moderate to good enantioselectivity, along with the release of CO2 (Scheme 20). While the enantioselectivity using certain substrates was initially unsatisfactory, simple phase separation significantly enhanced the enantiopurity of the products by

Photoswitches beyond azobenzene: a beginner’s guide

• Michela Marcon,
• Christoph Haag and
• Burkhard König

Beilstein J. Org. Chem. 2025, 21, 1808–1853, doi:10.3762/bjoc.21.143

• is symmetry-forbidden, which reflects in a low intensity of this band, while the Z-isomer is bent, giving rise to a higher intensity nπ* band [48]. The distorted nature of both Z- and E-isomers of diazocine makes the nπ* transition symmetry-allowed: as a consequence, the absorbance and the separation

• soluble in water. For C- and S-diazocine, the absorption band separation of the two isomers is lower in polar solvents, resulting in worse PSS. In particular, for the S-diazocine it was found that the E-chair conformer was bathochromically shifted with increasing polarity of the solvent until completely

• indigos [67]. In general, electron-donating substituents red-shift the absorption and decrease the thermal half-life, and vice versa for the electron-withdrawing ones. Phenyl rings with electron-withdrawing p-substituents allow a better fine-tuning of the spectral separation between the two isomers (thus

Unique halogen–π association detected in single crystals of C–N atropisomeric N-(2-halophenyl)quinolin-2-one derivatives and the thione analogue

• Mai Uchibori,
• Nanami Murate,
• Kanako Shima,
• Tatsunori Sakagami,
• Ko Kanehisa,
• Gary James Richards,
• Akiko Hori and
• Osamu Kitagawa

Beilstein J. Org. Chem. 2025, 21, 1748–1756, doi:10.3762/bjoc.21.138

• ) observed in their single crystals. Results and Discussion Synthesis of quinoline-2-ones (thione), their enantiomer separation and rotational stability We focused on N-(2-halophenyl)quinolin-2-ones 1 and the thione analogue 2 as alternative substrates to verify chirality- and functional group-dependent

Continuous-flow-enabled intensification in nitration processes: a review of technological developments and practical applications over the past decade

• Feng Zhou,
• Chuansong Duanmu,
• Yanxing Li,
• Jin Li,
• Haiqing Xu,
• Pan Wang and
• Kai Zhu

Beilstein J. Org. Chem. 2025, 21, 1678–1699, doi:10.3762/bjoc.21.132

• back-pressure regulation within the continuous-flow reactor system becomes essential to maintain precise pressure control and prevent solvent vaporization. Continuous-flow nitration systems can be augmented with integrated process modules including in-line separation units (work-up zone), real-time

Chemical synthesis of glycan motifs from the antitumor agent PI-88 through an orthogonal one-pot glycosylation strategy

• Shaokang Yang,
• Xingchun Sun,
• Hanyingzi Fan and
• Guozhi Xiao

Beilstein J. Org. Chem. 2025, 21, 1587–1594, doi:10.3762/bjoc.21.122

• trials for post-resection hepatocellular carcinoma [26]. Interestingly, Ferro and co-workers revised the structure of PI-88 to I and II in 2017 via successful separation of oligosaccharide phosphate fractions by preparative ion-exchange chromatography (Scheme 1A) [27]. Besides the major components α(1→3

Thermodynamic equilibrium between locally excited and charge transfer states in perylene–phenothiazine dyads

• Issei Fukunaga,
• Shunsuke Kobashi,
• Yuki Nagai,
• Hiroki Horita,
• Hiromitsu Maeda and
• Yoichi Kobayashi

Beilstein J. Org. Chem. 2025, 21, 1577–1586, doi:10.3762/bjoc.21.121

• donor–acceptor dyads based on perylene (Pe) and phenothiazine (PTZ), in which triphenylamine (TPA) units and a phenyl spacer were introduced to modulate donor strength and spatial separation. Among the series, Pe–PTZ(TPA)2 exhibits a distinct thermal equilibrium between the locally excited (LE) state of

• the LE state of the PTZ moiety. In contrast, Pe-Ph–PTZ(TPA)2, in which the donor–acceptor distance is increased by a phenyl spacer, does not show clear equilibrium behavior. These results underscore the crucial role of excited-state structural relaxation in tuning photoinduced charge separation, and

• demonstrate that precise electronic and geometric design can enable controllable excited-state behavior in orthogonal molecular systems. Keywords: charge transfer; electron transfer; molecular dyad; transient absorption; Introduction Photoinduced electron transfer and charge separation are fundamental

pH-Controlled isomerization kinetics of ortho-disubstituted benzamidines: E/Z isomerism and axial chirality

• Ryota Kimura,
• Satoshi Ichikawa and
• Akira Katsuyama

Beilstein J. Org. Chem. 2025, 21, 1568–1576, doi:10.3762/bjoc.21.120

• best of our knowledge, although the structural analysis of the E/Z isomerism of amidine [24][25] and the effect of the protonation of an amidine moiety on the rotational barrier of the C–N bond [26] have been studied, the separation of amidine E/Z isomers has not been reported yet. To verify our

• separation of the two peaks, HPLC analysis of each separated component showed single peaks, suggesting that the E and Z isomers of amidine 2 trifluoroacetate salt could be separated by standard RP-HPLC. The configuration of the amidine moiety of each component was characterized by NOE experiments (for

• protonated form calculated by the DFT method. Comparison of VT-NMR spectra of a) amidine 1 and b) its trifluoroacetate salt 1-H+ in DMSO-d6 (400 MHz). Separation and isolation of amidine E/Z isomers by RP-HPLC. The mobile phase contained CF3CO2H to protonate the amidine moiety. Kinetic analysis of the

Ambident reactivity of enolizable 5-mercapto-1H-tetrazoles in trapping reactions with in situ-generated thiocarbonyl S-methanides derived from sterically crowded cycloaliphatic thioketones

• Grzegorz Mlostoń,
• Małgorzata Celeda,
• Marcin Palusiak,
• Heinz Heimgartner,
• Marta Denel-Bobrowska and
• Agnieszka B. Olejniczak

Beilstein J. Org. Chem. 2025, 21, 1508–1519, doi:10.3762/bjoc.21.113

• selectivity, and in all cases formation of insertion products of both types, i. e., thioaminals 9 and dithioacetales 10, was observed (see Table 1). Chromatographic separation enabled the isolation of pure compounds, and the more stable dithioacetals 10 formed the more polar fraction. The less polar fraction

• contained thioaminals 9, which underwent a slow isomerization in CDCl3 solution. Notably, in the case of products 9k and 10k, bearing a Ph group at N(1), after a successful chromatographic separation, the less stable 9k underwent isomerization in CDCl3 solution (at rt) and no registration of NMR spectra of

• in the series of products derived from 1c is slower (and reversible?), and therefore, corresponding products of both N- and S-insertion are side by side observed as components of the crude reaction mixtures and their ratio was always ca. 55:45. In the latter case, chromatographic separation of the

N-Salicyl-amino acid derivatives with antiparasitic activity from Pseudomonas sp. UIAU-6B

• Joy E. Rajakulendran,
• Emmanuel Tope Oluwabusola,
• Michela Cerone,
• Terry K. Smith,
• Olusoji O. Adebisi,
• Adefolalu Adedotun,
• Gagan Preet,
• Sylvia Soldatou,
• Hai Deng,
• Rainer Ebel and
• Marcel Jaspars

Beilstein J. Org. Chem. 2025, 21, 1388–1396, doi:10.3762/bjoc.21.103

• funnel for 5 min to allow for proper separation of the constituent mixture between the aqueous and organic phases. Further partitioning of the aqueous phase with sec-butanol (300 mL × 3) yielded FB fraction (2.3 g) and FW fraction (1.4 g), respectively. The dichloromethane (FD) fraction (3.5 g) was

Oxetanes: formation, reactivity and total syntheses of natural products

• Peter Gabko,
• Martin Kalník and
• Maroš Bella

Beilstein J. Org. Chem. 2025, 21, 1324–1373, doi:10.3762/bjoc.21.101

Recent advances and future challenges in the bottom-up synthesis of azulene-embedded nanographenes

• Bartłomiej Pigulski

Beilstein J. Org. Chem. 2025, 21, 1272–1305, doi:10.3762/bjoc.21.99

• ) can exhibit remarkably red-shifted absorption, even when incorporated into relatively small π-conjugated frameworks. Through careful molecular design – retaining the azulene-like electronic structure and promoting spatial separation of the HOMO and LUMO orbitals – it is possible to achieve

Synthetic approach to borrelidin fragments: focus on key intermediates

• Yudhi Dwi Kurniawan,
• Zetryana Puteri Tachrim,
• Teni Ernawati,
• Faris Hermawan,
• Ima Nurasiyah and
• Muhammad Alfin Sulmantara

Beilstein J. Org. Chem. 2025, 21, 1135–1160, doi:10.3762/bjoc.21.91

• impact the outcome. Subsequently, separation of 84 from 85 was explored using various lipases and an esterase. However, preliminary experiments with these enzymes did not yield satisfactory results. The focus then shifted to route B, utilizing methyl 2,4,6-trimethyloctanoate 88 as the starting material

Investigations of amination reactions on an antimalarial 1,2,4-triazolo[4,3-a]pyrazine scaffold

• Henry S. T. Smith,
• Ben Giuliani,
• Kanchana Wijesekera,
• Kah Yean Lum,
• Sandra Duffy,
• Aaron Lock,
• Jonathan M. White,
• Vicky M. Avery and
• Rohan A. Davis

Beilstein J. Org. Chem. 2025, 21, 1126–1134, doi:10.3762/bjoc.21.90

• described in Supporting Information File 1. Pure fractions (≥95%) obtained from reversed-phase HPLC separation were then combined to obtain the desired product, 3-(4-chlorophenyl)-N-phenethyl-[1,2,4]triazolo[4,3-a]pyrazin-8-amine (2) as yellow needles (115 mg, 82%). General method for the synthesis of the

Gold extraction at the molecular level using α- and β-cyclodextrins

• Susana Santos Braga

Beilstein J. Org. Chem. 2025, 21, 1116–1125, doi:10.3762/bjoc.21.89

• can yield 150 grams or more of gold, according to a study conducted in Japan in 2008 by recycling companies [50]. It is important, however, that the gold extraction method for e-waste sources is affordable in order to hold up the interest in the recovery, separation, and recycling of these materials

Supramolecular assembly of hypervalent iodine macrocycles and alkali metals

• Krishna Pandey,
• Lucas X. Orton,
• Grayson Venus,
• Waseem A. Hussain,
• Toby Woods,
• Lichang Wang and
• Kyle N. Plunkett

Beilstein J. Org. Chem. 2025, 21, 1095–1103, doi:10.3762/bjoc.21.87

• devices or therapeutics [1], drug delivery [2], supramolecular sensing [3], purification [4], and separation [5][6]. The interactions in supramolecular assemblies are driven by well-known hydrogen-bonding, hydrophobic interactions, electrostatic interactions and π–π stacking [7][8]. The supramolecular

Recent advances in synthetic approaches for bioactive cinnamic acid derivatives

• Betty A. Kustiana,
• Galuh Widiyarti and
• Teni Ernawati

Beilstein J. Org. Chem. 2025, 21, 1031–1086, doi:10.3762/bjoc.21.85

On the photoluminescence in triarylmethyl-centered mono-, di-, and multiradicals

• Daniel Straub,
• Markus Gross,
• Mona E. Arnold,
• Julia Zolg and
• Alexander J. C. Kuehne

Beilstein J. Org. Chem. 2025, 21, 964–998, doi:10.3762/bjoc.21.80

• functionalized Cz-BTM than in pristine Cz-BTM, with a charge separation distance in the excited state of 0.68 nm versus 0.21 nm, respectively. Quantum chemical investigations have also been employed to understand the strong emission observed experimentally in TTM-Cz. One explanation is based on intensity

• emission wavelength points towards a CT excited state. Apparently upon excitation, symmetry breaking charge separation [94] occurs leading to a (zwitterionic) CT excited state with a diarylmethylene unit acting as a donor and a trityl unit acting as an acceptor [92]. This symmetry breaking charge

• separation seems to be supported in solvents of higher polarity. By contrast, when the polarity of the solvent is increased beyond that of toluene, the ϕ drops to about 10% in THF (λem = 785 nm), which is typical for CT excited states that are stabilized by polar solvents (see Figure 14a) [92]. Similar

Study of tribenzo[b,d,f]azepine as donor in D–A photocatalysts

• Katy Medrano-Uribe,
• Jorge Humbrías-Martín and
• Luca Dell’Amico

Beilstein J. Org. Chem. 2025, 21, 935–944, doi:10.3762/bjoc.21.76

• behavior is supported by the DFT studies, which suggested a better spatial separation between the HOMO and LUMO. As expected, the HOMO–LUMO energy gap followed a trend that is dependent on the electron-donating capacity of the nitrogen heterocycles and amine present in compounds 5e (2.9 eV), 5d (3.5 eV

A convergent synthetic approach to the tetracyclic core framework of khayanolide-type limonoids

• Zhiyang Zhang,
• Jialei Hu,
• Hanfeng Ding,
• Li Zhang and
• Peirong Rao

Beilstein J. Org. Chem. 2025, 21, 926–934, doi:10.3762/bjoc.21.75

• 4.4:1 mixture of regioisomeric alcohols with the desired isomer being the major component, presumably due to the considerable steric hindrance from the quaternary carbon at C4. However, decagram-scale separation of these two isomers by chromatography proved troublesome. Fortunately, the distinct