Metal-free nucleophilic trifluoromethylselenolation via an iodide-mediated umpolung reactivity of trifluoromethylselenotoluenesulfonate

• Kevin Grollier,
• Alexis Taponard,
• Arnaud De Zordo-Banliat,
• Emmanuel Magnier and
• Thierry Billard

Beilstein J. Org. Chem. 2020, 16, 3032–3037, doi:10.3762/bjoc.16.252

• , Institut Lavoisier de Versailles, 78035 Versailles Cedex, France CERMEP-In vivo imaging, Groupement Hospitalier Est, 59 Bd Pinel, 69677 Lyon, France 10.3762/bjoc.16.252 Abstract We report herein a practical method to generate CF3Se− (and RFSe−) anions from shelf-stable reagents under iodide activation

Selected peptide-based fluorescent probes for biological applications

• Debabrata Maity

Beilstein J. Org. Chem. 2020, 16, 2971–2982, doi:10.3762/bjoc.16.247

• , UMP, TBAP, MMP or other anions (SO42−, NO3−, HCO3−, CH3COO−) does not show any enhancement of fluorescence enabling the probe as selective for nucleoside triphosphates. The probe 1 is not toxic and has been demonstrated by fluorescence imaging of ATP in HeLa cells (Figure 2A, inset). Nucleic acid

• 4 binds with dsDNA in a combined intercalation and minor groove binding mode, whereas probe 5 binds with the outer surface of dsDNA. These two probes are low cytotoxic and probe 4 has been successfully used for imaging of nuclear DNA (Figure 5B, inset). Protein detection Specific peptides and

• lysosomal imaging (Figure 11) [64]. Peptide 14 contains two symmetric lysine-rich arms attached via their C-terminus to a central lysine spacer. Under high acidic conditions (pH > 2), the peptide 14 shows a sharp absorption band at 410 nm and relatively weak fluorescence at 623 nm, corresponding to the MCH

Naphthalonitriles featuring efficient emission in solution and in the solid state

• Sidharth Thulaseedharan Nair Sailaja,
• Iván Maisuls,
• Jutta Kösters,
• Alexander Hepp,
• Andreas Faust,
• Jens Voskuhl and
• Cristian A. Strassert

Beilstein J. Org. Chem. 2020, 16, 2960–2970, doi:10.3762/bjoc.16.246

• Wilhelms-Universität Münster, Heisenbergstraße 11, 48149 Münster, Germany European Institute for Molecular Imaging, Waldeyerstr.15, 48149 Münster, Germany Department of Nuclear Medicine, University Hospital Münster, Albert-Schweitzer-Campus 1, 48149 Münster, Germany Faculty of Chemistry (Organic Chemistry

• easy conversion into naphthalocyanines. Hence, peripherally substituted naphthalocyanines with push–pull character found widespread applications in non-lineal-optics (NLO) [36], photodynamic therapy [37] and photoacoustic imaging [38]. However, up to date, the literature reveals that there are no

• that H, Me, t-Bu, OMe, SMe and NMe2 represent excellent candidates as DSEgens. The combination of luminescence in both solutions and aggregated state enables future applications, such as data encryption, anti-counterfeiting [43] and non-invasive imaging for 3D tumor spheroids, considering that AIEgens

Encrypting messages with artificial bacterial receptors

• Pragati Kishore Prasad,
• Naama Lahav-Mankovski,
• Leila Motiei and
• David Margulies

Beilstein J. Org. Chem. 2020, 16, 2749–2756, doi:10.3762/bjoc.16.225

• (Figure 3). The first two receptors consist of DNA duplexes assembled from ODN-1 and FAM- or TAMRA-modified ODN-2 (FAM-ODN-2 or TAMRA-ODN-2), whereas the third receptor is a Cy5-modified ODN-1 (Cy5-ODN-1) [2]. Imaging the bacteria following washing, under the excitation and emission wavelengths of the

• grow in the same medium on a shaking incubator at 30 °C. Fluorescent imaging to study labeling during bacterial growth. The bacterial sample to be imaged was normalized to an OD600 = 0.3, suspended in 100 µL PBS, and placed on a glass-bottom dish (P35G-1.5-14-C; MatTek) precoated with poly-ʟ-lysine

Enzyme-instructed morphological transition of the supramolecular assemblies of branched peptides

• Dongsik Yang,
• Hongjian He and
• Bing Xu

Beilstein J. Org. Chem. 2020, 16, 2709–2718, doi:10.3762/bjoc.16.221

• ][20][21][22][23][24][25][26], as mimicry of amyloids [27], in the context of intracellular phase transition [28], and in molecular imaging [29][30]. Most of these studies are centered on peptide amphiphiles or amphiphilic peptides that are linear in geometry. Nature, however, also produces and

Water-soluble host–guest complexes between fullerenes and a sugar-functionalized tribenzotriquinacene assembling to microspheres

• Si-Yuan Liu,
• Xin-Rui Wang,
• Man-Ping Li,
• Wen-Rong Xu and
• Dietmar Kuck

Beilstein J. Org. Chem. 2020, 16, 2551–2561, doi:10.3762/bjoc.16.207

• imaging. Freeze drying was conducted on a Scientz-18N freeze dryer (Scientz Biotech, Zhejiang, China). Synthesis of TBTQ-(OP)6. A mixture of TBTQ-(OH)6 (2.17 g, 5.56 mmol), potassium carbonate (9.23 g, 66.8 mmol), and propargyl bromide (5.40 g, 44.5 mmol, 98 wt %) in acetonitrile (100 mL) was stirred and

• , white: H for TBTQ-(OG)6; silver grey: C for C60). SEM images of (a) C60; (b) TBTQ-(OG)6; (c) and (d) TBTQ-(OG)6 C60 (C60: 1.4 mM; TBTQ-(OG)6: 1.4 mM in water, samples were freeze-dried and gold-sputtered before imaging). Synthetic route to TBTQ-(OG)6. Supporting Information Supporting Information File

Palladium nanoparticles supported on chitin-based nanomaterials as heterogeneous catalysts for the Heck coupling reaction

• Tony Jin,
• Malickah Hicks,
• Davis Kurdyla,
• Sabahudin Hrapovic,
• Edmond Lam and
• Audrey Moores

Beilstein J. Org. Chem. 2020, 16, 2477–2483, doi:10.3762/bjoc.16.201

• to the higher solubility of ChsNC. Both PdNP@ChNCs and PdNP@ChsNCs were imaged unstained to avoid any artefact in Pd imaging [19]. Dispersed “packets” of Pd NPs were observed for both samples, with far more packets observed for PdNP@ChNC (packet diameter of 42 ± 10 nm) samples compared to PdNP@ChsNC

Naphthalene diimide bis-guanidinio-carbonyl-pyrrole as a pH-switchable threading DNA intercalator

• Poulami Jana,
• Filip Šupljika,
• Carsten Schmuck and
• Ivo Piantanida

Beilstein J. Org. Chem. 2020, 16, 2201–2211, doi:10.3762/bjoc.16.185

• compound 4 to DNA. For each measurement, 10 μL of the mixed solution were deposited onto a freshly cleaned mica surface (Plano GmbH). The sample was dried by means of a spin-coater (1 min at 20 rps and 2 min at 100 rps). For the AFM imaging operating in the tapping mode (scan rate 5 μm s−1) with N-type

pH- and concentration-dependent supramolecular self-assembly of a naturally occurring octapeptide

• Goutam Ghosh and
• Gustavo Fernández

Beilstein J. Org. Chem. 2020, 16, 2017–2025, doi:10.3762/bjoc.16.168

• responsible for the lack of well-defined assemblies. This phenomenon is also supported by AFM imaging (Figure 3c and Figure 3d), where PEP-1 forms short fibrillar nanostructures with lengths of several hundred nanometers at pH 13.0. Interestingly, at a lower basic pH value, such as 10.3, PEP-1 formed an

Automated high-content imaging for cellular uptake, from the Schmuck cation to the latest cyclic oligochalcogenides

• Rémi Martinent,
• Javier López-Andarias,
• Dimitri Moreau,
• Yangyang Cheng,
• Naomi Sakai and
• Stefan Matile

Beilstein J. Org. Chem. 2020, 16, 2007–2016, doi:10.3762/bjoc.16.167

• high-content (HC) microscopy can satisfy this need. The automated imaging of thousands of cells per condition in multiwell plates allows us to obtain quantitative data on not only the fluorescence intensity but also on the localization in a very short time. Quantitative and statistically relevant

• results can be obtained from dose–response curves of the targeted delivery to selected cells and the cytotoxicity in the same experiment, even with poorly optimized cellular systems. Keywords: automation; cell-penetrating peptides; cellular uptake; cytosolic delivery; cytotoxicity; high-content imaging

• , using multiwell plates and registering data on the fluorescence intensity and fluorescence localization in thousands of cells per condition, at HT [56][57][58][59]. To properly assess its potential, automated HC imaging was optimized first. The fluorescence of the Hoechst dye and the GFP of the fusion

Clickable azide-functionalized bromoarylaldehydes – synthesis and photophysical characterization

• Dominik Göbel,
• Marius Friedrich,
• Enno Lork and
• Boris J. Nachtsheim

Beilstein J. Org. Chem. 2020, 16, 1683–1692, doi:10.3762/bjoc.16.139

• ][8], biological imaging [9][10][11][12] and chemical sensing [13][14][15]. Referring to the Jablonski diagram (see Scheme 1a) [16][17], upon excitation from the singlet ground state (S0) to higher singlet states (Sn), followed by internal conversion (IC), either non-radiative or radiative decay to S0

Pauson–Khand reaction of fluorinated compounds

• Jorge Escorihuela,
• Daniel M. Sedgwick,
• Alberto Llobat,
• Mercedes Medio-Simón,
• Pablo Barrio and
• Santos Fustero

Beilstein J. Org. Chem. 2020, 16, 1662–1682, doi:10.3762/bjoc.16.138

• use, fluorine-containing molecules have also found key applications in the field of medical diagnosis. Two of the most powerful imaging techniques used nowadays, positron-emission tomography (PET) and magnetic resonance imaging (MRI), are routinely carried out using fluorine-containing organic

Rearrangement of o-(pivaloylaminomethyl)benzaldehydes: an experimental and computational study

• Csilla Hargitai,
• Györgyi Koványi-Lax,
• Tamás Nagy,
• Péter Ábrányi-Balogh,
• András Dancsó,
• Gábor Tóth,
• Judit Halász,
• Angéla Pandur,
• Gyula Simig and
• Balázs Volk

Beilstein J. Org. Chem. 2020, 16, 1636–1648, doi:10.3762/bjoc.16.136

• Spider diffractometer (Tokyo, Japan) with imaging plate area detector using graphite monochromatic Cu Kα radiation. SC-XRD structures were deposited at the Cambridge Crystallographic Data Centre under the following numbers: CCDC 1953421 (3a), 1953424 (3b), 1953422 (8b), 1953423 (23a) and 1958809 (23b

Anthelmintic drug discovery: target identification, screening methods and the role of open science

• Frederick A. Partridge,
• Ruth Forman,
• Carole J. R. Bataille,
• Graham M. Wynne,
• Marina Nick,
• Angela J. Russell,
• Kathryn J. Else and
• David B. Sattelle

Beilstein J. Org. Chem. 2020, 16, 1203–1224, doi:10.3762/bjoc.16.105

• compound MMV665807 [125]. Wiggle Index, another ImageJ macro for difference thresholding and motility quantification has been extensively used for library-scale screening of exsheathed Haemonchus contortus L3s [127][128][129][130]. INVAPP Paragon, an imaging setup and MATLAB analysis script that again uses

• difference thresholding for motility quantification has been used for library screening with Trichuris muris and C. elegans [39][135][136]. CellProfiler is a major open source package for quantitatively measuring phenotypes from imaging data, particularly from high-throughput screens [139]. Some groups have

• CC BY 4.0 license [154]. Another 10-chamber worm isolation microfluidic device has been reported, originally for the imaging of worms to quantify the sleep behaviour during development, and the CAD file is made available in the supporting information [155]. The cost of the equipment is of course

Development of fluorinated benzils and bisbenzils as room-temperature phosphorescent molecules

• Shigeyuki Yamada,
• Takuya Higashida,
• Yizhou Wang,
• Masato Morita,
• Takuya Hosokai,
• Kaveendra Maduwantha,
• Kaveenga Rasika Koswattage and
• Tsutomu Konno

Beilstein J. Org. Chem. 2020, 16, 1154–1162, doi:10.3762/bjoc.16.102

• materials. Keywords: alkyne oxidation; benzils; bistolanes; fluorinated compounds; phosphorescence; Introduction The development of organic light-emitting molecules is recognized as one of the most important studies because of the broad application of these compounds as fluorescence probes, bio-imaging

The charge-assisted hydrogen-bonded organic framework (CAHOF) self-assembled from the conjugated acid of tetrakis(4-aminophenyl)methane and 2,6-naphthalenedisulfonate as a new class of recyclable Brønsted acid catalysts

• Svetlana A. Kuznetsova,
• Alexander S. Gak,
• Yulia V. Nelyubina,
• Vladimir A. Larionov,
• Han Li,
• Michael North,
• Vladimir P. Zhereb,
• Alexander F. Smol'yakov,
• Artem O. Dmitrienko,
• Michael G. Medvedev,
• Igor S. Gerasimov,
• Ashot S. Saghyan and
• Yuri N. Belokon

Beilstein J. Org. Chem. 2020, 16, 1124–1134, doi:10.3762/bjoc.16.99

• of 15–30 μm. SEM imaging of crystals of F-1 in the F-1a phase formed from a DMSO/water system indicated the existence of two types of crystals (Figure 4). Type 1 was a set of platelets with heights of 0.7–1 mm, grown from a common planar base with a diameter of 0.1–0.3 mm. In other words, the

Fluorinated phenylalanines: synthesis and pharmaceutical applications

• Laila F. Awad and
• Mohammed Salah Ayoup

Beilstein J. Org. Chem. 2020, 16, 1022–1050, doi:10.3762/bjoc.16.91

• over the last few decades. ᴅ- or ʟ-fluorinated phenylalanines have had considerable industrial and pharmaceutical applications and they have been expanded also to play an important role as potential enzyme inhibitors as well as therapeutic agents and topography imaging of tumor ecosystems using PET

• -difluorophenylalanine derivatives 42a,b in quantitative yields [45] (Scheme 9). The radiolabeled 2-[18F]-fluoro-ʟ-phenylalanine 46 was synthesized as a promising radiopharmaceutical agent for molecular imaging by positron emission tomography (PET). The three-step synthesis of 46 started from [18F]-fluoride exchange in

• imaging [58] (Scheme 21). 1.9. Alkylation and hydrolysis of Ni(II) or Zn(II) complexes The synthesis of a series of fluorinated phenylalanines was achieved by transamination reactions between (R) or (S)-(15-aminomethyl-14-hydroxy-5,5-dimethyl-2,8-dithia[9](2,5)pyridinophanes) 96 and the sodium salt of o

Cation-induced ring-opening and oxidation reaction of photoreluctant spirooxazine–quinolizinium conjugates

• Phil M. Pithan,
• Sören Steup and
• Heiko Ihmels

Beilstein J. Org. Chem. 2020, 16, 904–916, doi:10.3762/bjoc.16.82

• -binding properties to be used as DNA-sensitive fluorescent probes in cell imaging [60][61][62] or as photoswitchable DNA ligands [63]. Therefore, we were interested in a combination of the photochromic properties of the spirooxazine moiety with the advantageous photophysical and biological properties of

Towards triptycene functionalization and triptycene-linked porphyrin arrays

• Gemma M. Locke,
• Keith J. Flanagan and
• Mathias O. Senge

Beilstein J. Org. Chem. 2020, 16, 763–777, doi:10.3762/bjoc.16.70

• biological labelling and are known photostable substitutes for fluorescein, giving them applications in cell imaging [20]. Due to the conjugated π-electron system present in BODIPYs they are more electron rich than porphyrins and possess an intense UV–vis absorption at approximately 400 nm, making them ideal

Synthesis of C₇₀-fragment buckybowls bearing alkoxy substituents

• Yumi Yakiyama,
• Shota Hishikawa and
• Hidehiro Sakurai

Beilstein J. Org. Chem. 2020, 16, 681–690, doi:10.3762/bjoc.16.66

• ; anal. calcd for C29H14O2(H2O)0.4: C, 86.73%; H, 3.71%; found: C, 86.58%; H, 3.50%. Single crystal X-ray analysis The diffraction data for 5a and 5c were collected on a Rigaku FR-E Superbright rotating-anode X-ray source with a Mo-target (λ = 0.71073 Å) equipped with a Rigaku RAXIS VII imaging plate as

Synthesis of triphenylene-fused phosphole oxides via C–H functionalizations

• Md. Shafiqur Rahman and
• Naohiko Yoshikai

Beilstein J. Org. Chem. 2020, 16, 524–529, doi:10.3762/bjoc.16.48

• -containing ladder molecules and their application as fluorescence probes for biological imaging [10][11]. Marinetti extensively studied the synthesis of phosphahelicenes with linear fusion of the phosphole and the carbohelicene units [12], and their applications in asymmetric catalysis [13] and organic light

Photophysics and photochemistry of NIR absorbers derived from cyanines: key to new technologies based on chemistry 4.0

• Bernd Strehmel,
• Christian Schmitz,
• Ceren Kütahya,
• Yulian Pang,
• Anke Drewitz and
• Heinz Mustroph

Beilstein J. Org. Chem. 2020, 16, 415–444, doi:10.3762/bjoc.16.40

• aprotic matrix takes the function of the matrix with absorber embedded. Typically, digital imaging in Computer to Plate technology (CtP) [10][11][12][13][14], curing of liquid coatings [5][15], powder coatings [16][17], laser drying [18][19][20], laser welding [21][22][23][24][25], or laser marking of

• plastics [26][27][28][29][30][31] represent some practical examples. Nevertheless, cyanines have held a long history regarding their practical use, which started to use such materials as sensitizers in silver halide photography [32][33][34] until the point when electronic media took their place in imaging

• also enabled the introduction of reactive groups such as -N=C=S facilitating them to function as marker in biological/imaging applications [9]. This reaction occurred with good yields and extended the use of such NIR absorbers in more fields [1][2][7][8][9]. In general, this functionalization resulted

Recent developments in photoredox-catalyzed remote ortho and para C–H bond functionalizations

• Rafia Siddiqui and
• Rashid Ali

Beilstein J. Org. Chem. 2020, 16, 248–280, doi:10.3762/bjoc.16.26

• delivery, medical imaging, etc.). Therefore, functionalization of arenes with this isotope is an important task. Although several reports are available in the literature for these transformations, they suffer from poor reactivity, unreactive starting material, and lower activities of the 18F-labeled

Combination of multicomponent KA² and Pauson–Khand reactions: short synthesis of spirocyclic pyrrolocyclopentenones

• Riccardo Innocenti,
• Elena Lenci,
• Gloria Menchi and
• Andrea Trabocchi

Beilstein J. Org. Chem. 2020, 16, 200–211, doi:10.3762/bjoc.16.23

• Riccardo Innocenti Elena Lenci Gloria Menchi Andrea Trabocchi Department of Chemistry “Ugo Schiff”, University of Florence, Via della Lastruccia 13, 50019 Sesto Fiorentino, Florence, Italy, Interdepartmental Center for Preclinical Development of Molecular Imaging (CISPIM), University of Florence

A combinatorial approach to improving the performance of azoarene photoswitches

• Joaquin Calbo,
• Aditya R. Thawani,
• Rosina S. L. Gibson,
• Andrew J. P. White and
• Matthew J. Fuchter

Beilstein J. Org. Chem. 2019, 15, 2753–2764, doi:10.3762/bjoc.15.266

• including imaging applications [20], photopharmacology [21], supramolecular chemistry [22][23], responsive foams [24], coordination chemistry [25] and DNA nanotechnology [26][27]. Whilst the azopyrazoles have excellent properties for use in a variety of photo-addressable applications, it remains frustrating