Navigating and expanding the roadmap of natural product genome mining tools

• Friederike Biermann,
• Sebastian L. Wenski and
• Eric J. N. Helfrich

Beilstein J. Org. Chem. 2022, 18, 1656–1671, doi:10.3762/bjoc.18.178

• biosynthesis → polyketide biosynthesis). As such, NP biosynthetic pathways utilize members of existing enzyme families that have evolved to perform new metabolic functions. Consequently, NP BGCs “borrow” genes encoding paralogs of enzymes that have their origin in primary metabolism and that have diverged into

Preparation of β-cyclodextrin-based dimers with selectively methylated rims and their use for solubilization of tetracene

• Konstantin Lebedinskiy,
• Volodymyr Lobaz and
• Jindřich Jindřich

Beilstein J. Org. Chem. 2022, 18, 1596–1606, doi:10.3762/bjoc.18.170

• of CD solution. The blank titrations of CDs to the solvent were performed similarly, and the heat of dilution was subtracted from the corresponding isotherms. The isotherms were fitted with ITC 200 1.25.5 (Malvern Panalytical Ltd, UK) software, based on Origin 7SR4 v 7.0552 (OriginLab Corporation, MA

On drug discovery against infectious diseases and academic medicinal chemistry contributions

• Yves L. Janin

Beilstein J. Org. Chem. 2022, 18, 1355–1378, doi:10.3762/bjoc.18.141

• pharmaceutical industry which certainly owe some of its origin to the academic world [34][35][36][37]. This perspective will not describe the true chemical challenges as well as the many environmental issues surrounding this last problem. All these are actually well described in books [38][39][40][41][42][43

• experiments following the screening of a library [51][52]. However, many of these compounds, often of natural origin [53]; polyphenols and curcumin being emblematic [54], are the bread and butter of quack medicine. Indeed, these will be found active on many biochemical or cellular assays [46] and will thus

• new drugs to treat tuberculosis is also of interest. The starting point was probably CGI-17341 (20), a mutagenic compound reported by Ciba-Geigy in 1989 for its effect on mycobacteria [150]. And this substance owes its origin to the many nitroimidazole derivatives known for their anti-infective

Cyclodextrin-based Schiff base pro-fragrances: Synthesis and release studies

• Attila Palágyi,
• Jindřich Jindřich,
• Juraj Dian and
• Sophie Fourmentin

Beilstein J. Org. Chem. 2022, 18, 1346–1354, doi:10.3762/bjoc.18.140

• nonlinear regression method (Levenberg–Marquardt algorithm) using both mono- and double-exponential functions (Microcal Origin software). In most cases, the double-exponentials described the observed behavior much better (see Supporting Information File 1, Figures S1–S11). Experimental data were fitted with

Ionic multiresonant thermally activated delayed fluorescence emitters for light emitting electrochemical cells

• Merve Karaman,
• Abhishek Kumar Gupta,
• Subeesh Madayanad Suresh,
• Tomas Matulaitis,
• Lorenzo Mardegan,
• Daniel Tordera,
• Henk J. Bolink,
• Sen Wu,
• Stuart Warriner,
• Ifor D. Samuel and
• Eli Zysman-Colman

Beilstein J. Org. Chem. 2022, 18, 1311–1321, doi:10.3762/bjoc.18.136

• to the PL, the EL spectra are broad and unstructured. The EL of DiKTa-OBuIm and DiKTa-DPA-OBuIm occurs at λEL of 534 and 656 nm, respectively. Both neat-film EL spectra are red-shifted from the solution state and the 1 wt % in mCP film PL spectra. The origin of this red shift could be ascribed to the

Thermally activated delayed fluorescence (TADF) emitters: sensing and boosting spin-flipping by aggregation

• Ashish Kumar Mazumdar,
• Gyana Prakash Nanda,
• Nisha Yadav,
• Upasana Deori,
• Upasha Acharyya,
• Bahadur Sk and
• Pachaiyappan Rajamalli

Beilstein J. Org. Chem. 2022, 18, 1177–1187, doi:10.3762/bjoc.18.122

• (Figure 4). Additionally, the phosphorescence spectra of both compounds were recorded in THF at 77 K (Figure S3 in Supporting Information File 1). The retention of the structural phosphorescence band in THF indicates its origin from the locally excited triplet state 3LE. The ΔEST values calculated based

New azodyrecins identified by a genome mining-directed reactivity-based screening

• Atina Rizkiya Choirunnisa,
• Kuga Arima,
• Yo Abe,
• Noritaka Kagaya,
• Kei Kudo,
• Hikaru Suenaga,
• Junko Hashimoto,
• Manabu Fujie,
• Noriyuki Satoh,
• Kazuo Shin-ya,
• Kenichi Matsuda and
• Toshiyuki Wakimoto

Beilstein J. Org. Chem. 2022, 18, 1017–1025, doi:10.3762/bjoc.18.102

• , structurally related aliphatic azoxy natural products, in which the antimicrobial and cytotoxic activities do not depend on the double bond adjacent to the azoxy bond [23]. The difference in the SAR profiles between azodyrecins and elaiomycins suggests their distinct modes of actions. Biosynthetic origin of

Isolation and biosynthesis of daturamycins from Streptomyces sp. KIB-H1544

• Yin Chen,
• Jinqiu Ren,
• Ruimin Yang,
• Jie Li,
• Sheng-Xiong Huang and
• Yijun Yan

Beilstein J. Org. Chem. 2022, 18, 1009–1016, doi:10.3762/bjoc.18.101

• since the 1960s [15][16]. Stable-isotope labeling experiments confirmed that ʟ-tyrosine or ʟ-phenylalanine are involved in the biosynthesis of p-terphenyl as metabolic origin. The precursors undergoing deamination are converted to the corresponding α-keto acid, then a quinone intermediate arises by

Anti-inflammatory aromadendrane- and cadinane-type sesquiterpenoids from the South China Sea sponge Acanthella cavernosa

• Shou-Mao Shen,
• Qing Yang,
• Yi Zang,
• Jia Li,
• Xueting Liu and
• Yue-Wei Guo

Beilstein J. Org. Chem. 2022, 18, 916–925, doi:10.3762/bjoc.18.91

• cadinane-type sesquiterpenoid of plant origin (leaves and stems of Manglietia insignis) [21], based on their identical 1H and 13C NMR data (Table 1 and Figures S16–S20 in Supporting Information File 1). Since the relative configuration of 4 (7S*, 10R*) was assigned, its absolute configuration was worth to

• reported ximaocavernosins A–C, E, and G [11], as well as compounds 4 and 5 obtained in this present study. However, aromadendrane-type sesquiterpenoids from A. cavernosa are generally produced in optically pure forms, occasionally enantiomeric with others from a different origin, exemplified by

Synthesis of odorants in flow and their applications in perfumery

• Merlin Kleoff,
• Paul Kiler and
• Philipp Heretsch

Beilstein J. Org. Chem. 2022, 18, 754–768, doi:10.3762/bjoc.18.76

• Originally, musk was obtained from the gland of the musk deer and used as a powerful base note. Due to the high price of musks of natural origin, the vast majority of them is produced by chemical synthesis. Today, a plethora of synthetic musks with a broad structural and olfactory diversity are available

• iron (Habanolide, (12E)-oxacyclohexadec-12-en-2-one) [3][4][9][46][47]. Although, all musks of natural origin are macrocyles, most synthetic musks are polycyclic musks (PCM), while the fourth synthetic generation of musks are linear molecules [3][4]. In 1999, juniper lactone (56) was isolated from the

Amamistatins isolated from Nocardia altamirensis

• Till Steinmetz,
• Wolf Hiller and
• Markus Nett

Beilstein J. Org. Chem. 2022, 18, 360–367, doi:10.3762/bjoc.18.40

• under the assumption of a shared biosynthetic origin. Compound 6 shows an optical rotation of = −10.6, which is consistent with the published value of pseudomonin A ( = −9.5) [12]. This natural product is structurally closely related to 6, featuring a terminal amide instead of a carboxylic acid

Site-selective reactions mediated by molecular containers

• Rui Wang and
• Yang Yu

Beilstein J. Org. Chem. 2022, 18, 309–324, doi:10.3762/bjoc.18.35

• promoting effect of the hydrophobic pocket of B. The origin of the catalytic behavior of the bowl host B can be explained by to two main aspects. Firstly, the bowl host B possesses an open cavity that facilitates rapid binding and dissociation of the guests. Secondly and more importantly, before the

Iridium-catalyzed hydroacylation reactions of C1-substituted oxabenzonorbornadienes with salicylaldehyde: an experimental and computational study

• Angel Ho,
• Austin Pounder,
• Krish Valluru,
• Leanne D. Chen and
• William Tam

Beilstein J. Org. Chem. 2022, 18, 251–261, doi:10.3762/bjoc.18.30

• hydride, and C–C bond-forming reductive elimination. Computational results indicate the origin of regioselectivity is involved in the reductive elimination step. Keywords: C–H activation; density functional theory; hydroacylation; iridium catalysis; regioselectivity; Introduction Organic synthesis is

• density functional theory calculations. We set out to confirm the catalytic cycle in detail, the geometries of the intermediates, the energy profiles of the reactions, and most importantly, the origin of regioselectivity. Results and Discussion Experimental We began our investigation with C1-methyl

• under the experimental reaction conditions. As such, we theorize the origin of regioselectivity for the title reaction is the reductive elimination step. Based on the relative kinetics, we predict the point of selectivity must occur before the irreversible C–C forming step. Comparing the two competing

The role of chemistry in the success of oligonucleotides as therapeutics

• Pawan Kumar and
• Tom Brown

Beilstein J. Org. Chem. 2022, 18, 197–199, doi:10.3762/bjoc.18.22

• nucleotides; siRNAs; RNA-targeting oligonucleotides (e.g., antisense, siRNA, and anti-miR) are widely explored as fundamental research tools and are gaining increasing promise as therapeutic agents, particularly against diseases of genetic origin. The idea of treating a disease by targeting the molecular

The enzyme mechanism of patchoulol synthase

• Houchao Xu,
• Bernd Goldfuss,
• Gregor Schnakenburg and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2022, 18, 13–24, doi:10.3762/bjoc.18.2

• study [9]. For all sesquiterpenes in this study the carbon numbering follows that of FPP to indicate the (proposed) biosynthetic origin of each carbon. Red dots indicate 14C-labelled carbons. Biosynthesis of patchoulol (part II). A) Cyclisation mechanism from FPP to 3 as suggested by Akhila et al., and

Unsaturated fatty acids and a prenylated tryptophan derivative from a rare actinomycete of the genus Couchioplanes

• Shun Saito,
• Kanji Indo,
• Naoya Oku,
• Hisayuki Komaki,
• Masashi Kawasaki and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2021, 17, 2939–2949, doi:10.3762/bjoc.17.203

• Streptomyces, are especially noted, accounting for more than 800 metabolites of actinomycetes origin [11], which include the antiinfective aminoglycoside gentamicin [13], antidiabetic glycoside acarbose [14], glycopeptide antibiotic teicoplanin [15], enediyne antitumor component of drug-antibody conjugate

Iron-catalyzed domino coupling reactions of π-systems

• Austin Pounder and
• William Tam

Beilstein J. Org. Chem. 2021, 17, 2848–2893, doi:10.3762/bjoc.17.196

• provided the desired carboamination product 164. By using methyl cinnamate derivatives, the reactions were highly diastereoselective for the formation of 1,2-anti carboamination products. Notably, the Ritter reaction was found to be the origin of diastereoselectivity on the basis of a density functional

Recent advances in the asymmetric phosphoric acid-catalyzed synthesis of axially chiral compounds

• Alemayehu Gashaw Woldegiorgis and
• Xufeng Lin

Beilstein J. Org. Chem. 2021, 17, 2729–2764, doi:10.3762/bjoc.17.185

• spirophosphoric acid (CPA 4). A wide range of quinoline-derived biaryls 13 with various substituents was synthesized in good to excellent yields (up to 99%) with excellent enantioselectivities (up to 98% ee) (Scheme 5). A working model for the origin of enantioselectivity in C–H olefination was provided by

The ethoxycarbonyl group as both activating and protective group in N-acyl-Pictet–Spengler reactions using methoxystyrenes. A short approach to racemic 1-benzyltetrahydroisoquinoline alkaloids

• Marco Keller,
• Karl Sauvageot-Witzku,
• Franz Geisslinger,
• Nicole Urban,
• Michael Schaefer,
• Karin Bartel and
• Franz Bracher

Beilstein J. Org. Chem. 2021, 17, 2716–2725, doi:10.3762/bjoc.17.183

• alkaloids). The common biosynthetic origin of these alkaloids has been investigated thoroughly over decades, and (S)-norcoclaurine, a metabolite formally built up by condensation of dopamine and 4-hydroxyphenylacetaldehyde, was identified as the common intermediate. A broad range of biological activities

Chemical syntheses and salient features of azulene-containing homo- and copolymers

• Vijayendra S. Shetti

Beilstein J. Org. Chem. 2021, 17, 2164–2185, doi:10.3762/bjoc.17.139

• of the spectrum, the largest shift of 2500 nm was displayed by the polymer 56. The origin of such absorption bands in the near-IR region can be attributed to an intramolecular charge transfer (ICT) process leading to the lowering of the HOMO–LUMO bandgap [34]. The azulene moiety plays a pivotal role

Volatile emission and biosynthesis in endophytic fungi colonizing black poplar leaves

• Christin Walther,
• Pamela Baumann,
• Katrin Luck,
• Beate Rothe,
• Peter H. W. Biedermann,
• Jonathan Gershenzon,
• Tobias G. Köllner and
• Sybille B. Unsicker

Beilstein J. Org. Chem. 2021, 17, 1698–1711, doi:10.3762/bjoc.17.118

• stronger defense response against the beet armyworm (Spodoptera exigua) [81]. In these cases, it is not known whether the increased terpene emission results from biosynthesis by the plant or the fungus. Future work should include measurements of plant and fungal TPS expression to determine the origin of

Breaking paracyclophane: the unexpected formation of non-symmetric disubstituted nitro[2.2]metaparacyclophanes

• Suraj Patel,
• Tyson N. Dais,
• Paul G. Plieger and
• Gareth J. Rowlands

Beilstein J. Org. Chem. 2021, 17, 1518–1526, doi:10.3762/bjoc.17.109

• % probability level [63]. Crystal structure of 15. Ellipsoids are drawn at a 50% probability level [63]. Possible origin of stereoselectivity. Nitration of [2.2]paracyclophane (1) and the synthesis of 4-hydroxy-5-nitro[2.2]metaparacyclophane (5) and the cyclohexadienone cyclophane 6 (average yield from more

Antiviral therapy in shrimp through plant virus VLP containing VP28 dsRNA against WSSV

• Santiago Ramos-Carreño,
• Ivone Giffard-Mena,
• Jose N. Zamudio-Ocadiz,
• Alfredo Nuñez-Rivera,
• Ricardo Valencia-Yañez,
• Jaime Ruiz-Garcia,
• Maria Teresa Viana and
• Ruben D. Cadena-Nava

Beilstein J. Org. Chem. 2021, 17, 1360–1373, doi:10.3762/bjoc.17.95

• -dsRNAvp28 was administered per os. However, we experiment with the same dose of VLP-dsRNAvp28 (6.0 µg/shrimp), equivalent to the same dilution of WSSV to infect them. But the bioassay was finished at 17 dpi. However, one should not rule out possible differences in the shrimp origin line (genetics

Icilio Guareschi and his amazing “1897 reaction”

• Gian Cesare Tron,
• Alberto Minassi,
• Giovanni Sorba,
• Mara Fausone and
• Giovanni Appendino

Beilstein J. Org. Chem. 2021, 17, 1335–1351, doi:10.3762/bjoc.17.93

• , his Introduzione allo Studio degli Alcaloidi con special riguardo agli alcaloidi vegetali ed alle ptomaine (An Introduction to Alkaloid Chemistry, and especially on those of plant origin and on ptomaines), first published in 1892, was translated four years later into German, and the popularity of this

• origin of this is considered the central puzzle of biology [58]. Hydrogen cyanide is a fundamental prebiotic constituent, and glutarimides are easily formed under prebiotic conditions [58]. Could a Guareschi amide precursor have served as a primordial source of reducing power in prebiotic media en route

• could be used to produce oil, a finite resource, or even be involved in the generation of oil. Guareschi maintained an active interest in the origin of oil, with his first publication being the study of a fossil resin, and wrote two monumental monographs on this topic [42]. Despite intense geological

A new glance at the chemosphere of macroalgal–bacterial interactions: In situ profiling of metabolites in symbiosis by mass spectrometry

• Marine Vallet,
• Filip Kaftan,
• Veit Grabe,
• Fatemeh Ghaderiardakani,
• Simona Fenizia,
• Aleš Svatoš,
• Georg Pohnert and
• Thomas Wichard

Beilstein J. Org. Chem. 2021, 17, 1313–1322, doi:10.3762/bjoc.17.91

• high concentrations during saline stress conditions [32]. It has not yet been described in the Ulva–bacteria symbiosis. Not all essential genes for ectoine biosynthesis reported by [33] were found in the U. mutabilis genome [34], providing further support for the bacterial origin of ectoine. Homologs