Activity assays of NnlA homologs suggest the natural product N-nitroglycine is degraded by diverse bacteria

• Kara A. Strickland,
• Brenda Martinez Rodriguez,
• Ashley A. Holland,
• Shelby Wagner,
• Michelle Luna-Alva,
• David E. Graham and
• Jonathan D. Caranto

Beilstein J. Org. Chem. 2024, 20, 830–840, doi:10.3762/bjoc.20.75

• , the physiological function of its substrate NNG. This compound is one of the few known nitramine natural products and the only one produced by bacteria instead of fungi [22]. Its only known natural sources are strains of Streptomyces bacteria [23][24]. The abundance and distribution of these NNG

Chemoenzymatic synthesis of macrocyclic peptides and polyketides via thioesterase-catalyzed macrocyclization

• Senze Qiao,
• Zhongyu Cheng and
• Fuzhuo Li

Beilstein J. Org. Chem. 2024, 20, 721–733, doi:10.3762/bjoc.20.66

• brevis [27], can penetrate the lipid phase of a Gram-positive inner cell membrane [28][29]. Despite exhibiting high antimicrobial activity, this compound also disrupts the membranes of higher mammalian cells, as evidenced by their pronounced hemolytic activity [30]. Establishing a concise and diverse

Genome mining of labdane-related diterpenoids: Discovery of the two-enzyme pathway leading to (−)-sandaracopimaradiene in the fungus Arthrinium sacchari

• Fumito Sato,
• Terutaka Sonohara,
• Shunta Fujiki,
• Akihiro Sugawara,
• Yohei Morishita,
• Taro Ozaki and
• Teigo Asai

Beilstein J. Org. Chem. 2024, 20, 714–720, doi:10.3762/bjoc.20.65

• and absolute configuration of 1, we assumed this compound could be a biosynthetic precursor of myrocins. In the flanking regions of AsPS and AsCPS, genes encoding oxidoreductases such as cytochrome P450 are present. These genes might be involved in the oxidation of 1 in the biosynthesis of myrocins. A

Production of non-natural 5-methylorsellinate-derived meroterpenoids in Aspergillus oryzae

• Jia Tang,
• Yixiang Zhang and
• Yudai Matsuda

Beilstein J. Org. Chem. 2024, 20, 638–644, doi:10.3762/bjoc.20.56

• this compound class is derived from the aromatic precursor 3,5-dimethylorsellinic acid (DMOA). In this study, we constructed engineered metabolic pathways in the fungus Aspergillus oryzae to expand the molecular diversity of meroterpenoids. We employed the 5-methylorsellinic acid (5-MOA) synthase FncE

Discovery of unguisin J, a new cyclic peptide from Aspergillus heteromorphus CBS 117.55, and phylogeny-based bioinformatic analysis of UngA NRPS domains

• Sharmila Neupane,
• Marcelo Rodrigues de Amorim and
• Elizabeth Skellam

Beilstein J. Org. Chem. 2024, 20, 321–330, doi:10.3762/bjoc.20.32

• powder, +37 (c 0.1, EtOH) [lit +40 (c 1.0, EtOH)] [5]; for the 1H and 13C NMR spectroscopic data, see Table S2 in Supporting Information File 1. By comparison with literature data this compound was identified as unguisin B (2) [1][5], further corroborating the identification of the new unguisin J (1

Substitution reactions in the acenaphthene analog of quino[7,8-h]quinoline and an unusual synthesis of the corresponding acenaphthylenes by tele-elimination

• Ekaterina V. Kolupaeva,
• Narek A. Dzhangiryan,
• Alexander F. Pozharskii,
• Oleg P. Demidov and
• Valery A. Ozeryanskii

Beilstein J. Org. Chem. 2024, 20, 243–253, doi:10.3762/bjoc.20.24

• be more basic than diamine 1, the cumulative effect of all functional groups in this compound led to a slight drop in the pKa value compared to quinoquinolines 3 and 5, despite the presence of two electron-donating methoxy groups. Bromination and tele-elimination As preliminary experiments showed

Multi-redox indenofluorene chromophores incorporating dithiafulvene donor and ene/enediyne acceptor units

• Christina Schøttler,
• Kasper Lund-Rasmussen,
• Line Broløs,
• Philip Vinterberg,
• Ema Bazikova,
• Viktor B. R. Pedersen and
• Mogens Brøndsted Nielsen

Beilstein J. Org. Chem. 2024, 20, 59–73, doi:10.3762/bjoc.20.8

• was observed for compound 27 was also observed for this compound. The degradation of compound 20 in the presence of light and oxygen is visible as a color change upon leaving a sample of the compound in solution in an open vial, unshielded from light (Figure S2 in Supporting Information File 1). This

• other hand, they are stronger acceptors than the acetylenic scaffold 22 containing the DTF donor. We have previously [33] studied a related compound in which all four triisopropylsilylethynyl substituents of 26 are replaced by cyano groups; this compound showed superior acceptor properties, being

• containing acetylenic acceptor motifs at both ends of the IF core and hence no DTF donor unit. Compound 23 also undergoes a reversible, second reduction to form the dianion. This compound should gain aromaticity upon either reduction or oxidation as illustrated in Figure 9. X-ray crystallographic analysis

Using the phospha-Michael reaction for making phosphonium phenolate zwitterions

• Matthias R. Steiner,
• Max Schmallegger,
• Larissa Donner,
• Johann A. Hlina,
• Christoph Marschner,
• Judith Baumgartner and
• Christian Slugovc

Beilstein J. Org. Chem. 2024, 20, 41–51, doi:10.3762/bjoc.20.6

• 3.09 ppm, respectively, and two novel signals for tertiary butyl groups. Accordingly, we reasoned that the phosphine has reacted presumably with acrylonitrile forming a stable species not suited to catalyze the oxa-Michael reaction. In order to identify this compound, we reacted 1 with acrylonitrile or

Unprecedented synthesis of a 14-membered hexaazamacrocycle

• Anastasia A. Fesenko and
• Anatoly D. Shutalev

Beilstein J. Org. Chem. 2023, 19, 1728–1740, doi:10.3762/bjoc.19.126

• the starting material. This compound was prepared according to the described regioselective method [42] based on the reaction of malononitrile with triethyl orthoformate followed by subsequent treatment of the obtained dinitrile 2 with benzaldehyde methyl hydrazone in benzene, conc. aqueous HCl in

Effects of the aldehyde-derived ring substituent on the properties of two new bioinspired trimethoxybenzoylhydrazones: methyl vs nitro groups

• Dayanne Martins,
• Roberta Lamosa,
• Talis Uelisson da Silva,
• Carolina B. P. Ligiero,
• Sérgio de Paula Machado,
• Daphne S. Cukierman and
• Nicolás A. Rey

Beilstein J. Org. Chem. 2023, 19, 1713–1727, doi:10.3762/bjoc.19.125

• electrophilic character of C7. In both hdz-CH3 and hdz-NO2, methoxy hydrogens occur as a pair of singlets: H15 and H17 at 3.88 ppm, and H16 at 3.74 ppm. Methyl H18 in hdz-CH3 appears as a more shielded singlet at 2.22 ppm. Regarding the aromatic region of this compound, the doublet related to H6 (7.28 ppm) is

Secondary metabolites of Diaporthe cameroonensis, isolated from the Cameroonian medicinal plant Trema guineensis

• Bel Youssouf G. Mountessou,
• Élodie Gisèle M. Anoumedem,
• Blondelle M. Kemkuignou,
• Yasmina Marin-Felix,
• Frank Surup,
• Marc Stadler and
• Simeon F. Kouam

Beilstein J. Org. Chem. 2023, 19, 1555–1561, doi:10.3762/bjoc.19.112

• isolated from the marine-derived fungus Pseudopithomyces maydicus [12]. The proposed structure was fully supported (Table 1) by HSQC-DEPT, HMBC, and COSY spectra (Figures S5–S7 in Supporting Information File 1). Key HMBC correlations of 1 are illustrated in Figure 2. This compound was found to be a

Synthesis and biological evaluation of Argemone mexicana-inspired antimicrobials

• Jessica Villegas,
• Bryce C. Ball,
• Katelyn M. Shouse,
• Caleb W. VanArragon,
• Ashley N. Wasserman,
• Hannah E. Bhakta,
• Allen G. Oliver,
• Danielle A. Orozco-Nunnelly and
• Jeffrey M. Pruet

Beilstein J. Org. Chem. 2023, 19, 1511–1524, doi:10.3762/bjoc.19.108

• derivatives, compound B8 represents the natural compound pseudopalmatine [39]. The synthesis of this compound has been reported, albeit through alternative methods [33][38][40]. Reports indicated that unlike most other plant-derived protoberberines, pseudopalmatine has had far less pharmacological

One-pot nucleophilic substitution–double click reactions of biazides leading to functionalized bis(1,2,3-triazole) derivatives

• Hans-Ulrich Reissig and
• Fei Yu

Beilstein J. Org. Chem. 2023, 19, 1399–1407, doi:10.3762/bjoc.19.101

• -triazole) 21. It turned out that the hydrogenolysis of this compound was very capricious and (in part) depended on the batch of palladium on carbon used. In most cases, incomplete consumption of starting material was observed, even after long reaction time. The best result is depicted in Scheme 8 (reaction

Functional characterisation of twelve terpene synthases from actinobacteria

• Anuj K. Chhalodia,
• Houchao Xu,
• Georges B. Tabekoueng,
• Binbin Gu,
• Kizerbo A. Taizoumbe,
• Lukas Lauterbach and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2023, 19, 1386–1398, doi:10.3762/bjoc.19.100

• inactive enzymes were obtained and one enzyme was not expressed. Another interesting discovery was the identification of a diterpene synthase from Kutzneria kofuensis that selectively produces allokutznerene. This compound was previously only known as a side product from a closely related phomopsene

Synthesis of ether lipids: natural compounds and analogues

• Marco Antônio G. B. Gomes,
• Alicia Bauduin,
• Chloé Le Roux,
• Romain Fouinneteau,
• Wilfried Berthe,
• Mathieu Berchel,
• Hélène Couthon and
• Paul-Alain Jaffrès

Beilstein J. Org. Chem. 2023, 19, 1299–1369, doi:10.3762/bjoc.19.96

• . The replacement of the oxygen atom located in sn-1 position by a methylamino group corresponds to a compound known as BN52211 (30.6, Figure 30). This compound was used in many studies for its antitumor cytotoxicity [136] or its immunologic properties [137]. To the best of our knowledge, the synthesis

• of this compound is only reported in a patent published in 1991 by P. Braquet et al. [138]. The reaction starts with the deprotonation of 30.1 to produce the alcoholate that was alkylated with iodomethane. Then, the reductive opening reaction of the 1,3-dioxane heterocycle in the presence of BH3 as

Intermediates and shunt products of massiliachelin biosynthesis in Massilia sp. NR 4-1

• Till Steinmetz,
• Blaise Kimbadi Lombe and
• Markus Nett

Beilstein J. Org. Chem. 2023, 19, 909–917, doi:10.3762/bjoc.19.69

• analyzing the structures of the isolated metabolites, it became evident that the predicted lipopeptide siderophore [17] had not been produced by Massilia sp. NR 4-1 under the chosen cultivation conditions, as no further extract fraction possessed CAS activity. The reasons for the absence of this compound

Synthesis, structure, and properties of switchable cross-conjugated 1,4-diaryl-1,3-butadiynes based on 1,8-bis(dimethylamino)naphthalene

• Semyon V. Tsybulin,
• Ekaterina A. Filatova,
• Alexander F. Pozharskii,
• Valery A. Ozeryanskii and
• Anna V. Gulevskaya

Beilstein J. Org. Chem. 2023, 19, 674–686, doi:10.3762/bjoc.19.49

• of samples 5b, 5d, and 5e suitable for X-ray diffraction studies (Figure 3 and Figure 4). Crystals of compound 5c were grown up using CHCl3/EtOH solvent, and it was unexpectedly found that keeping this compound in the above system for a month leads to its partial heterocyclization to benzo[g]indole

• )benzonitrile and N,N-dimethyl-4-((4-nitrophenyl)ethynyl)aniline in chloroform solution are 373 and 416 nm, respectively [35]. In the same time, λmax for 2-((4-nitrophenyl)ethynyl)-1,8-bis(dimethylamino)naphthalene is 474 nm [36]. The red shift observed in the spectrum of this compound as well as in the spectra

Enolates ambushed – asymmetric tandem conjugate addition and subsequent enolate trapping with conventional and less traditional electrophiles

• Péter Kisszékelyi and
• Radovan Šebesta

Beilstein J. Org. Chem. 2023, 19, 593–634, doi:10.3762/bjoc.19.44

• by the trapping of the metal enolate with Vilsmeier–Haack reagent. This way, the β-chloroaldehyde 143 was isolated in 69% yield and 92% ee. Further transformation of this compound resulted in the taxol core in only 4 steps with 11% overall yield while retaining the correct stereochemistry introduced

Phenanthridine–pyrene conjugates as fluorescent probes for DNA/RNA and an inactive mutant of dipeptidyl peptidase enzyme

• Josipa Matić,
• Tana Tandarić,
• Marijana Radić Stojković,
• Filip Šupljika,
• Zrinka Karačić,
• Ana Tomašić Paić,
• Lucija Horvat,
• Robert Vianello and
• Lidija-Marija Tumir

Beilstein J. Org. Chem. 2023, 19, 550–565, doi:10.3762/bjoc.19.40

• increasing back after cooling. That was probably caused by the temperature-induced unstacking and also by the aggregation of compounds. Compound Phen-Py-2 was more tended both to intramolecular stacking and aggregation. This compound lacked any significant responses upon eventual binding to ds

Access to cyclopropanes with geminal trifluoromethyl and difluoromethylphosphonate groups

• Ita Hajdin,
• Romana Pajkert,
• Mira Keßler,
• Jianlin Han,
• Haibo Mei and
• Gerd-Volker Röschenthaler

Beilstein J. Org. Chem. 2023, 19, 541–549, doi:10.3762/bjoc.19.39

• (5). This compound was synthesized smoothly within three steps in 16.6% overall yield. The synthetic route commenced from the preparation of N-protected amine 3, followed by the deprotection of benzylamine 3 to furnish 4 and ended with the diazotization of 4 using tert-butyl nitrite. As a result, the

• -diazo-1,1,3,3,3-pentafluoropropylphosphonate (5), was presented for the first time. This compound is a bench-stable, non-volatile, and non-explosive liquid, which facilitated the handling of this reagent. Furthermore, our research highlights the possibility for facile and efficient syntheses of

Asymmetric synthesis of a stereopentade fragment toward latrunculins

• Benjamin Joyeux,
• Antoine Gamet,
• Nicolas Casaretto and
• Bastien Nay

Beilstein J. Org. Chem. 2023, 19, 428–433, doi:10.3762/bjoc.19.32

• %). This compound results from the transposition of the para-nitrobenzoyl (PNBz) group onto the 13-OH, which could be favoured by the steric hindrance of C-15 and a possible π–π stacking with the OPMB group. These PNBz esters were readily hydrolyzed to furnished diol 24 in 97% yield. The oxydation of the

Combretastatins D series and analogues: from isolation, synthetic challenges and biological activities

• Jorge de Lima Neto and
• Paulo Henrique Menezes

Beilstein J. Org. Chem. 2023, 19, 399–427, doi:10.3762/bjoc.19.31

• in the intestinal epithelial cell line IEC-6. In addition, inhibition of mRNA expression of TNF-α, IL-1β, and IL-6 was observed, which means that this compound has potential pharmacological application towards inflammatory diseases such inflammatory bowel disease [71]. Conclusion A variety of efforts

Strategies to access the [5-8] bicyclic core encountered in the sesquiterpene, diterpene and sesterterpene series

• Cécile Alleman,
• Charlène Gadais,
• Laurent Legentil and
• François-Hugues Porée

Beilstein J. Org. Chem. 2023, 19, 245–281, doi:10.3762/bjoc.19.23

• [20]. Its total synthesis was explored by Srikrishna and Nagaraju in 2012 using a linear strategy (Scheme 4) [20]. Thus, menthene 25 was converted in 16 steps into cyclopentane 26 presenting two unsaturated lateral chains. This compound was then treated with G-I catalyst to give the corresponding [5-8

• introduction of the eight-membered ring: (−)-Teubrevin G (59) is an example of a C5-C8 bicycle in which the C5 unit corresponds to a furan ring (Scheme 9) [34]. Indeed, this compound isolated from aerial parts of Teucrium brevifolium has a unique structure composed of a cyclooctanone, fused with a furan ring

• only in modest amounts even after extensive reaction times (more than 3 days) and high catalyst loadings (30–35 mol %). After reaction optimization, use of G-II catalyst allowed formation of cyclooctene 58 in excellent 90% yield. This compound could ultimately be advanced to 59 in 8 steps. Exhibiting a

Germacrene B – a central intermediate in sesquiterpene biosynthesis

• Houchao Xu and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2023, 19, 186–203, doi:10.3762/bjoc.19.18

• that 11 can bind to the main protease Mpro of the SARS-CoV-2 virus that is involved in viral reproduction, but experimental tests supporting this finding are lacking [89]. Selina-5,7(11)-diene (20) can arise from I1 through 1,2-hydride shift to I1a and deprotonation (Scheme 7). This compound was first

• ) (Scheme 10A) and upon treatment of 4-epi-maaliol (34) with acid (Scheme 10B). Full 1H and 13C NMR data for 20 were reported [91]. Compound 21 can in theory be formed from I1a by 1,2-methyl group shift to I1b and deprotonation (Scheme 7). However, this compound was only obtained as synthetic material by

• attack of water to I2. As mentioned above, this compound occurs in Cinnamomum camphora [86] and has later also been isolated from Laggera pterodonta ([α]D24 = +4, c 0.5, MeOH) [93]. Compound 38, (+)-eudesma-5,7(11)-diene, could potentially arise from I2 by 1,2-hydride shift to I2a and deprotonation, but

Identification and determination of the absolute configuration of amorph-4-en-10β-ol, a cadinol-type sesquiterpene from the scent glands of the African reed frog Hyperolius cinnamomeoventris

• Angelique Ladwig,
• Markus Kroll and
• Stefan Schulz

Beilstein J. Org. Chem. 2023, 19, 167–175, doi:10.3762/bjoc.19.16

• , in this work, we show that another major constituent of the male specific gland is (10R,1S,6R,7R,10R)-amorph-4-ene-10β-ol [(1R,4R,4aR,8aS)-4-isopropyl-1,6-dimethyl-1,2,3,4,4a,7,8,8a-octahydronaphthalen-1-ol]. This compound was synthesized for the first time and has the opposite configuration to

• configuration. Controlling the stereogenic center C-4 of 4 would allow access to the respective enantiomers. Unfortunately, enantiomerically pure 4 is not easily available, in contrast to ketone 17. This compound can be obtained in high optical purity using Jørgensen’s organocatalyst 16 [20][21]. In addition

• synthesis and characterization showed that this compound is the opposite enantiomer of 14 known from plants. This may indicate biosynthesis in the frog, but more work has to be performed to establish this. Furthermore, a short diversity-oriented synthesis based on the work of Taber and Gunn [13] enabled