Mesoionic tetrazolium-5-aminides: Synthesis, molecular and crystal structures, UV–vis spectra, and DFT calculations

• Vladislav A. Budevich,
• Sergei V. Voitekhovich,
• Alexander V. Zuraev,
• Vadim E. Matulis,
• Vitaly E. Matulis,
• Alexander S. Lyakhov,
• Ludmila S. Ivashkevich and
• Oleg A. Ivashkevich

Beilstein J. Org. Chem. 2021, 17, 385–395, doi:10.3762/bjoc.17.34

• ) level of theory [42]. X-ray structure determination Single crystal X-ray diffraction data of the mesoionic compounds 8a, 10, 11a, and salt 9 were collected on a SMART Apex II diffractometer using graphite monochromatic Mo Kα radiation (λ = 0.71073 Å) at a temperature of 100 K. The structures were solved

CF₃-substituted carbocations: underexploited intermediates with great potential in modern synthetic chemistry

• Anthony J. Fernandes,
• Armen Panossian,
• Bastien Michelet,
• Agnès Martin-Mingot,
• Frédéric R. Leroux and
• Sébastien Thibaudeau

Beilstein J. Org. Chem. 2021, 17, 343–378, doi:10.3762/bjoc.17.32

• analysis of the structures of 56f, 13f, and 21f by X-ray diffraction crystallography revealed similar bond angle distortions [64][65]. A considerable delocalization of the positive charge in the aryl ring was therefore suggested (Scheme 15): in the dominant resonance form 25f’, 48f’, or 14f’, the α

Annulation of a 1,3-dithiole ring to a sterically hindered o-quinone core. Novel ditopic redox-active ligands

• Sergey V. Norkov,
• Anton V. Cherkasov,
• Andrey S. Shavyrin,
• Maxim V. Arsenyev,
• Viacheslav A. Kuropatov and
• Vladimir K. Cherkasov

Beilstein J. Org. Chem. 2021, 17, 273–282, doi:10.3762/bjoc.17.26

• mixture. X-ray diffraction data revealed that the bond lengths distribution in the six-membered ring of 6b is typical of sterically hindered o-quinones. The annulated fragment including the 1,3-dithiole cycle and the malononitrile unit is almost flat. The six-membered o-quinone ring is distorted due to

• . Heating the mixture at 60 °C for 4 h does not result in any change of the color from that characteristic of o-quinone 4. After cooling of the solution red crystals of adduct 8 were isolated (see Figure 2 and Figure S6 in Supporting Information File 1). The X-ray diffraction study reveals that adduct 8 is

• bulky sulfur-containing group. The possible pathway for the following cyclization is the Michael addition of the sulfide atom to the central carbon of the acetylacetonate group [38][39][40][41]. The X-ray diffraction study as well as IR and NMR spectroscopy data reveal that in all synthesized compounds

The preparation and properties of 1,1-difluorocyclopropane derivatives

• Kymbat S. Adekenova,
• Peter B. Wyatt and
• Sergazy M. Adekenov

Beilstein J. Org. Chem. 2021, 17, 245–272, doi:10.3762/bjoc.17.25

Synthesis, crystal structures and properties of carbazole-based [6]helicenes fused with an azine ring

• Daria I. Tonkoglazova,
• Anna V. Gulevskaya,
• Konstantin A. Chistyakov and
• Olga I. Askalepova

Beilstein J. Org. Chem. 2021, 17, 11–21, doi:10.3762/bjoc.17.2

• -detection (see Supporting Information File 1, Figures S38–S40). X-ray molecular structures The structures of the title compounds 10a–c were further explored by a single-crystal X-ray diffraction analysis (Figure 1, see also Supporting Information File 1, Figures S35–S37 and Table S1) and compared with that

• steps of the method are electrophile-induced 6-endo-dig cyclizations of ortho-alkynylated biaryls. The overall yields of helicenes in five stages of the synthesis exceed 30%. The single-crystal X-ray diffraction analysis revealed the non-planar crystal structures of the synthesized helicenes responsible

• studies and HRMS measurements (Centre for X-ray Diffraction Studies and Chemical Analysis and Materials Research Centre, Institute of Chemistry, St. Petersburg State University). Funding The authors gratefully acknowledge the Russian Foundation for Basic Research (grant No 18-03-00006) for financial

Construction of pillar[4]arene[1]quinone–1,10-dibromodecane pseudorotaxanes in solution and in the solid state

• Xinru Sheng,
• Errui Li and
• Feihe Huang

Beilstein J. Org. Chem. 2020, 16, 2954–2959, doi:10.3762/bjoc.16.245

• in the solid state. From single crystal X-ray diffraction, the linear guest molecules thread into cyclic pillar[4]arene[1]quinone host molecules in the solid state, stabilized by CH∙∙∙π interactions and hydrogen bonds. The bromine atoms at the periphery of the guest molecule provide convenience for

• maximum. This also indicated that the interactions between H and G were weak. Conclusion In summary, we constructed novel pseudorotaxanes based on a pillar[4]arene[1]quinone and 1,10-dibromodecane. Single crystal X-ray diffraction analysis showed an alkane molecule threaded into the cavities of two pillar

Regioselective synthesis of heterocyclic N-sulfonyl amidines from heteroaromatic thioamides and sulfonyl azides

• Vladimir Ilkin,
• Vera Berseneva,
• Tetyana Beryozkina,
• Tatiana Glukhareva,
• Lidia Dianova,
• Wim Dehaen,
• Eugenia Seliverstova and
• Vasiliy Bakulev

Beilstein J. Org. Chem. 2020, 16, 2937–2947, doi:10.3762/bjoc.16.243

• the heterocycle the N-sulfonyl amidines exist in either E- or Z-isomeric forms. Experimental X-ray diffraction study X-ray analyses were accomplished on an Xcalibur 3 diffractometer using the standard procedure (graphite-monochromated Mo Kα irradiation, ω-scanning with step 1o, T = 295(2) K (see

Ultrasound-assisted Strecker synthesis of novel 2-(hetero)aryl-2-(arylamino)acetonitrile derivatives

• Emese Gal,
• Luiza Gaina,
• Hermina Petkes,
• Alexandra Pop,
• Castelia Cristea,
• Gabriel Barta,
• Dan Cristian Vodnar and
• Luminiţa Silaghi-Dumitrescu

Beilstein J. Org. Chem. 2020, 16, 2929–2936, doi:10.3762/bjoc.16.242

• precipitated from the reaction mixture in crystalline form as depicted by scanning electron microscopy (SEM) analysis. The single crystal X-ray diffraction analysis disclosed the arrangement of the α-(arylamino)acetonitrile molecules in the aggregated crystalline state as a racemic mixture. The mutagenic

Synthesis and investigation of quadruplex-DNA-binding, 9-O-substituted berberine derivatives

• Jonas Becher,
• Daria V. Berdnikova,
• Heiko Ihmels and
• Christopher Stremmel

Beilstein J. Org. Chem. 2020, 16, 2795–2806, doi:10.3762/bjoc.16.230

• particular binding mode. However, it was shown by X-ray diffraction analysis of the G4-DNA-bound ligand 1e3 that the berberine unit binds to quadruplex DNA by π-stacking with the 3’-end quartet in a similar mode as the parent berberine; however, in the case of 1e3 the aryl-substituents of the side chain are

Synthesis of purines and adenines containing the hexafluoroisopropyl group

• Viacheslav Petrov,
• Rebecca J. Dooley,
• Alexander A. Marchione,
• Elizabeth L. Diaz,
• Brittany S. Clem and
• William Marshall

Beilstein J. Org. Chem. 2020, 16, 2739–2748, doi:10.3762/bjoc.16.224

• with hexane). Pure 2a was isolated after recrystallization from hexane (see Experimental section), and the structure was established by X-ray diffraction (Figure 1). 4-Azabenzimidazole (3) reacted with tetrakis(trifluoromethyl)-1,3-dithietane (1) under similar conditions, with the formation of the two

• isomeric products 3a and 3b (Scheme 2). The major isomer 3a was isolated in a pure form, and the structure was confirmed by X-ray diffraction. It should be pointed out that the 19F NMR spectra of the two isomers were very different. While the resonance corresponding to the CH(CF3)2 group in the spectrum of

• in the formation of two regioisomers, 4a and 4b (Scheme 3). In this context, the isomers 4a and 4b were separated by column chromatography (see Experimental section), and the structure of both was established by X-ray diffraction. In the 19F NMR spectra of both isomers 4a and 4b, the resonances

A heterobimetallic tetrahedron from a linear platinum(II)-bis(acetylide) metalloligand

• Matthias Hardy,
• Marianne Engeser and
• Arne Lützen

Beilstein J. Org. Chem. 2020, 16, 2701–2708, doi:10.3762/bjoc.16.220

• succeed to obtain single crystals of our metallosupramolecular assemblies that were suitable for single-crystal X-ray diffraction experiments. Therefore, we generated energy-minimized gas phase structures of 4, employing a force-field approach using the GFN2-xTB approach recently established to model

Selective and reversible 1,3-dipolar cycloaddition of 6-aryl-1,5-diazabicyclo[3.1.0]hexanes with 1,3-diphenylprop-2-en-1-ones under microwave irradiation

• Alexander P. Molchanov,
• Mariia M. Efremova,
• Mariya A. Kryukova and
• Mikhail A. Kuznetsov

Beilstein J. Org. Chem. 2020, 16, 2679–2686, doi:10.3762/bjoc.16.218

• ). Accordingly, two characteristic signals for carbon atoms of the pyrazolidine ring are present in the 13C NMR spectrum – at 72.2 (2СН) and 68.7 (СН) ppm. The spatial configuration of the adducts 3e and 3g was further determined by single crystal X-ray diffraction analysis (Figure 1 and Figure 2). All products

• Resonance, Center for Chemical analysis and materials research and X-ray Diffraction Center, respectively.

Particle size effect in the mechanically assisted synthesis of β-cyclodextrin mesitylene sulfonate

• Stéphane Menuel,
• Sébastien Saitzek,
• Eric Monflier and
• Frédéric Hapiot

Beilstein J. Org. Chem. 2020, 16, 2598–2606, doi:10.3762/bjoc.16.211

• (Table 1). As expected, an increase in the SSA was observed upon grinding because of the reduction of the β-CD particle size. XRD analysis X-ray diffraction data give additional evidence for the crystallinity variation of the β-CD particles upon grinding. Figure 3 shows a series of X-ray powder

• diffraction X-ray diffraction (XRD) measurements were performed using a Rigaku ULTIMA IV diffractometer equipped with Cu anticathode (λKα = 1.5418 Å), Soller slits to limit the divergence of X-ray beam and a nickel foil filter to attenuate the CuKβ line. XRD patterns were recorded in the range of 3–50° (scan

Thermodynamic and electrochemical study of tailor-made crown ethers for redox-switchable (pseudo)rotaxanes

• Henrik Hupatz,
• Marius Gaedke,
• Hendrik V. Schröder,
• Julia Beerhues,
• Arto Valkonen,
• Fabian Klautzsch,
• Sebastian Müller,
• Felix Witte,
• Kari Rissanen,
• Biprajit Sarkar and
• Christoph A. Schalley

Beilstein J. Org. Chem. 2020, 16, 2576–2588, doi:10.3762/bjoc.16.209

• Information File 1). Slow diffusion of CH3CN into a concentrated solution of NDIC7 in CH2Cl2 yielded single crystals suitable for X-ray diffraction (Figure 2b). The macrocycle displays a folded conformation in the solid state due to the flexible linker, featuring an intramolecular NDI/naphthalene stacking

Synthesis of novel fluorinated building blocks via halofluorination and related reactions

• Attila Márió Remete,
• Tamás T. Novák,
• Melinda Nonn,
• Matti Haukka,
• Ferenc Fülöp and
• Loránd Kiss

Beilstein J. Org. Chem. 2020, 16, 2562–2575, doi:10.3762/bjoc.16.208

• (rac)-11b was unequivocally established by single-crystal X-ray diffraction (Figure 1). Then, the preparation of another model compound, the trans-annelated bicyclic carbamide derivative (rac)-13, was attempted. This compound was also unknown in the literature. In the reaction of commercially available

• both NOESY measurements and single-crystal X-ray diffraction (Figure 2 and Figure 3). The next rigid bicyclic system studied was the methyl diendo norbornene dicarboxylate 16. The treatment of 16 with NBS/Deoxo-Fluor® yielded the bromolactone (rac)-17a [37]. The reaction, when repeated only with NBS

Water-soluble host–guest complexes between fullerenes and a sugar-functionalized tribenzotriquinacene assembling to microspheres

• Si-Yuan Liu,
• Xin-Rui Wang,
• Man-Ping Li,
• Wen-Rong Xu and
• Dietmar Kuck

Beilstein J. Org. Chem. 2020, 16, 2551–2561, doi:10.3762/bjoc.16.207

• the slight shift of the peaks further indicates the successful complexation of TBTQ-(OG)6 and C60. Simulations of complex TBTQ-(OG)6 C60 in water. In spite of numerous attempts, we failed to obtain good-quality crystals to determine the binding conformation of complex TBTQ-(OG)6 C60 by X-ray

• diffraction. Therefore, the optimized geometry of the 1:1 complex of TBTQ-(OG)6 C60 in water was simulated by density functional theory (DFT) calculations at the B3LYP/6-31G(d) level of theory, which was completed with the aid of Molclus, MOPAC, and ORCA 4.1.0 programs [54][55][56]. As shown in Figure 6, C60

Palladium nanoparticles supported on chitin-based nanomaterials as heterogeneous catalysts for the Heck coupling reaction

• Tony Jin,
• Malickah Hicks,
• Davis Kurdyla,
• Sabahudin Hrapovic,
• Edmond Lam and
• Audrey Moores

Beilstein J. Org. Chem. 2020, 16, 2477–2483, doi:10.3762/bjoc.16.201

• nanomaterials. Specifically, the deacetylation of ChNC into ChsNC led to a decrease in crystallinity in the nanomaterial. Indeed, this can be seen in the FTIR with the broadening of the N–H and O–H stretches from 3000–3500 cm−1. This was more notable in the powder X-ray diffraction (PXRD) spectra of ChNCs and

Design and synthesis of a bis-macrocyclic host and guests as building blocks for small molecular knots

• Elizabeth A. Margolis,
• Rebecca J. Keyes,
• Stephen D. Lockey IV and
• Edward E. Fenlon

Beilstein J. Org. Chem. 2020, 16, 2314–2321, doi:10.3762/bjoc.16.192

• appeared to hinder the formation of crystals suitable for X-ray diffraction to prove the topology of the product. The second-generation TLC approach to trefoil knots is presented here. It involves the binding of an electron-poor guest (2 or 3) in an electron-rich host (1) to promote the threading step, an

Convenient access to pyrrolidin-3-ylphosphonic acids and tetrahydro-2H-pyran-3-ylphosphonates with multiple contiguous stereocenters from nonracemic adducts of a Ni(II)-catalyzed Michael reaction

• Alexander N. Reznikov,
• Dmitry S. Nikerov,
• Anastasiya E. Sibiryakova,
• Victor B. Rybakov,
• Evgeniy V. Golovin and
• Yuri N. Klimochkin

Beilstein J. Org. Chem. 2020, 16, 2073–2079, doi:10.3762/bjoc.16.174

• (Scheme 2). An X-ray diffraction study [50] of the formyl derivative 10a showed its (2R,3R,4S)-configuration (Figure 3). The absolute configuration of the other phosphonates 10b–d and 11b–d is assumed by analogy. Hydrogenation of phosphonates 6d,f with o-anisyl and bulky adamantan-1-yl substituents at the

• of Henry/acetalyzation reaction with phosphonate 6ea. Supporting Information Supporting Information File 451: Experimental procedures, copies of NMR, FTIR, and mass spectra, HPLC and X-ray diffraction data. Supporting Information File 452: Crystallographic information files (CIF). Funding The

Metal-free synthesis of phosphinoylchroman-4-ones via a radical phosphinoylation–cyclization cascade mediated by K₂S₂O₈

• Qiang Liu,
• Weibang Lu,
• Guanqun Xie and
• Xiaoxia Wang

Beilstein J. Org. Chem. 2020, 16, 1974–1982, doi:10.3762/bjoc.16.164

• (Table 1, entry 1). The structure of 3aa was unambiguously confirmed by X-ray diffraction analysis of a single crystal (Figure 2) and by NMR spectroscopy (see Supporting Information File 1) [33]. The increase of the amount of K2S2O8 to 3 equiv resulted in the improvement of the yield of 3aa to 52% (Table

• the optimized conditions (Scheme 4). The reaction afforded the desired product 3ba in a good yield of 56%, and the structure was also confirmed by X-ray diffraction (see Supporting Information File 1) [33]. To gain an insight into the reaction mechanism, we carried out some control experiments (Scheme

Synthesis of 3(2)-phosphonylated thiazolo[3,2-a]oxopyrimidines

• Ksenia I. Kaskevich,
• Anastasia A. Babushkina,
• Vladislav V. Gurzhiy,
• Dmitrij M. Egorov,
• Nataly I. Svintsitskaya and
• Albina V. Dogadina

Beilstein J. Org. Chem. 2020, 16, 1947–1954, doi:10.3762/bjoc.16.161

• thiazolopyrimidine-5-ones by reacting 6-methyl-2-thiouracils with bromoethynylketones has been reported by Shishkin and co-workers (Scheme 4) [20]. The authors for the first time proved the structure of the 5-oxo isomer by single crystal X-ray diffraction analysis. The Pd-catalyzed Sonogashira coupling reaction

• those for 3-phenylthiazolo[3,2-a]-5-oxopyrimidine [40]. In addition, the structures of the phosphonylated thiazolopyrimidines 3a and 3d were unambiguously confirmed by single crystal X-ray diffraction data. The presence of the CH3 group at the position 5 of the thiouracil ring changes the reaction

• NMR spectroscopy. In the 13C NMR spectra of the thiazolopyrimidines 6a–c, the O=C–CH=CH fragment is observed by signals of equal intensity at δC 112–113 and 135–136 ppm. However, the unambiguous proof of the structure of thiazolopyrimidine-7-one 6b was obtained by single crystal X-ray diffraction

Selective preparation of tetrasubstituted fluoroalkenes by fluorine-directed oxetane ring-opening reactions

• Clément Q. Fontenelle,
• Thibault Thierry,
• Romain Laporte,
• Emmanuel Pfund and
• Thierry Lequeux

Beilstein J. Org. Chem. 2020, 16, 1936–1946, doi:10.3762/bjoc.16.160

• major isomer were obtained by recrystallization. The X-ray diffraction analysis clearly showed that the bromine atom was located on the carbon trans to the fluorine atom resulting in the major product with the E-geometry (see Supporting Information File 1). It should be noted that longer reaction times

• ]. Pleasingly, when subjecting compound 4 to the previous reaction conditions, a single isomer of bromoalcohol 4d formed (determined by 1H NMR of the crude) and the product was isolated in an excellent yield of 94% (Table 2, entry 3). The geometry of the product was confirmed to be E-4d by X-ray diffraction

On the hydrolysis of diethyl 2-(perfluorophenyl)malonate

• Ilya V. Taydakov and
• Mikhail A. Kiskin

Beilstein J. Org. Chem. 2020, 16, 1863–1868, doi:10.3762/bjoc.16.153

• File 1). The structure of acid 12 in solid form was studied by single crystal X-ray diffraction experiments (Figure 3). The structural parameters were deposited at CCDC (deposit No. 1993963, see Supporting Information File 1 for details). Since basic conditions seem to be unsuitable for the hydrolysis

• Supporting Information File 148: Detailed information about experimental procedures, X-ray diffraction experiments for compound 12 and characterization data for compounds 3 and 12. Acknowledgements Single crystal X-ray diffraction analysis was performed using the equipment at the Centre for Collective Use

Synthesis and highly efficient light-induced rearrangements of diphenylmethylene(2-benzo[b]thienyl)fulgides and fulgimides

• Vladimir P. Rybalkin,
• Sofiya Yu. Zmeeva,
• Lidiya L. Popova,
• Valerii V. Tkachev,
• Andrey N. Utenyshev,
• Olga Yu. Karlutova,
• Alexander D. Dubonosov,
• Vladimir A. Bren,
• Sergey M. Aldoshin and
• Vladimir I. Minkin

Beilstein J. Org. Chem. 2020, 16, 1820–1829, doi:10.3762/bjoc.16.149

• -isomers and of products of the photoinduced rearrangement completed by 1,5-H shift reaction, 3a,4-dihydronaphtho[2,3-c]furans(pyrroles) C, were established based on the data of 1H and 13C NMR spectroscopy and X-ray diffraction studies. Keywords: benzo[b]thiophene; fulgide; fulgimide; photorearrangement

• ; X-ray diffraction; Introduction Photochromic compounds are of considerable interest as molecular switches, elements of optical memory and molecular logic devices [1][2][3][4]. Fulgides and fulgimides possessing excellent thermal and photochemical stability, structurally modulated fluorescent

• afford exclusively fulgimides 3Z and 7E, respectively, as the single products (Scheme 2 and Scheme 3). According to IR, 1H and 13C NMR spectroscopy data Z- and E-isomers of fulgide 3 exist in the form of the open isomers O. This was also confirmed by X-ray diffraction study. The molecular structures of

Microwave-assisted efficient one-pot synthesis of N²-(tetrazol-5-yl)-6-aryl/heteroaryl-5,6-dihydro-1,3,5-triazine-2,4-diamines

• Moustafa Sherief Moustafa,
• Ramadan Ahmed Mekheimer,
• Saleh Mohammed Al-Mousawi,
• Mohamed Abd-Elmonem,
• Hesham El-Zorba,
• Afaf Mohamed Abdel Hameed,
• Tahany Mahmoud Mohamed and
• Kamal Usef Sadek

Beilstein J. Org. Chem. 2020, 16, 1706–1712, doi:10.3762/bjoc.16.142

• unequivocally supported by single-crystal X-ray diffraction (Figure 1 and Table 2). A plausible mechanism for the formation of products 4 is postulated in Scheme 3. The dimerization of cyanamide 1 in basic medium to cyanoguanidine 5 and subsequent reaction with 5-aminotetrazole (3) yielded tetrazolylbiguanidine