A versatile way for the synthesis of monomethylamines by reduction of N-substituted carbonylimidazoles with the NaBH₄/I₂ system

• Lin Chen,
• Xuan Zhou,
• Zhiyong Chen,
• Changxu Wang,
• Shunjie Wang and
• Hanbing Teng

Beilstein J. Org. Chem. 2022, 18, 1032–1039, doi:10.3762/bjoc.18.104

• suitable stability for isolation or storage, and various good methods for their perparation have been developed by employing different starting materials such as amines [56][57][58], isocyanates [59][60][61] and carboxylic acids [62]. Since the carbonyl carbon atom of the carbonylimidazole moiety is easily

New azodyrecins identified by a genome mining-directed reactivity-based screening

• Atina Rizkiya Choirunnisa,
• Kuga Arima,
• Yo Abe,
• Noritaka Kagaya,
• Kei Kudo,
• Hikaru Suenaga,
• Junko Hashimoto,
• Manabu Fujie,
• Noriyuki Satoh,
• Kazuo Shin-ya,
• Kenichi Matsuda and
• Toshiyuki Wakimoto

Beilstein J. Org. Chem. 2022, 18, 1017–1025, doi:10.3762/bjoc.18.102

• vitro assay elucidated the tailoring step of azodyrecin biosynthesis, which is mediated by the S-adenosylmethionine (SAM)-dependent methyltransferase Ady1. This study paves the way for the targeted isolation of aliphatic azoxy natural products through a genome-mining approach and further investigations

• , fungi, plants, and marine sponges [1][2][3]. Azoxy natural products have occasionally been discovered by conventional isolation schemes guided by biological activities or physicochemical properties, which are not selective for the azoxy functionality. Consequently, there are only a few examples of azoxy

• facilitate the subsequent isolation process of the target molecules. This strategy has been successfully applied for detecting a range of peculiar functional groups, such as ureido [7], isocyanide [8], and alkyne [9][10]. A combination of reactivity-based screening and genome-based prioritization would allow

Isolation and biosynthesis of daturamycins from Streptomyces sp. KIB-H1544

• Yin Chen,
• Jinqiu Ren,
• Ruimin Yang,
• Jie Li,
• Sheng-Xiong Huang and
• Yijun Yan

Beilstein J. Org. Chem. 2022, 18, 1009–1016, doi:10.3762/bjoc.18.101

• coupled to an Agilent q TOF 6540 mass spectrometer with a YMC-Triart C18 column (250 × 4.6 mm, i.d. 5 μm) and a flow rate of 1.0 mL/min. Extraction and isolation S. sp. KIB-H1544, isolated from the rhizosphere soil of Datura stramonium L., was 99.9% similar to the 16S rRNA of Streptomyces roseofulvus

First example of organocatalysis by cathodic N-heterocyclic carbene generation and accumulation using a divided electrochemical flow cell

• Daniele Rocco,
• Ana A. Folgueiras-Amador,
• Richard C. D. Brown and
• Marta Feroci

Beilstein J. Org. Chem. 2022, 18, 979–990, doi:10.3762/bjoc.18.98

• demonstrate for the first time the possibility to synthesize and accumulate N-heterocyclic carbene starting from BMImBF4 in a divided electrochemical flow cell. Although not fully optimized, the production of NHC was confirmed indirectly by isolation of its reaction product with elemental sulfur. A solution

Introducing a new 7-ring fused diindenone-dithieno[3,2-b:2',3'-d]thiophene unit as a promising component for organic semiconductor materials

• Valentin H. K. Fell,
• Joseph Cameron,
• Alexander L. Kanibolotsky,
• Eman J. Hussien and
• Peter J. Skabara

Beilstein J. Org. Chem. 2022, 18, 944–955, doi:10.3762/bjoc.18.94

• thiophene groups and has been applied in solution processed OFETs. A maximum hole mobility of 1.33 × 10−4 cm2 V−1 s−1 was measured for a single device. The isolation of the dibromide compound 29 provides the basis for the inclusion of this interesting molecule in larger conjugated structures or copolymers

Anti-inflammatory aromadendrane- and cadinane-type sesquiterpenoids from the South China Sea sponge Acanthella cavernosa

• Shou-Mao Shen,
• Qing Yang,
• Yi Zang,
• Jia Li,
• Xueting Liu and
• Yue-Wei Guo

Beilstein J. Org. Chem. 2022, 18, 916–925, doi:10.3762/bjoc.18.91

• Province, China, resulting in the isolation of fifteen new nitrogenous sesquiterpenoids, exemplified by (+)-ximaocavernosin A (8) (Figure 1) [11]. To accumulate more amounts of these sesquiterpenoids to perform more in-depth pharmacological screening, we carried out the chemical investigation of the same

• with five related known ones [2, 3, (−)-4, 6, and 7] (Figure 1), were obtained. Herein, we report the isolation, chiral separation of racemic mixtures of 4 and 5, structural elucidation, plausible biosynthetic pathway, and biological evaluation of these isolated compounds. Results and Discussion By the

• ratios of 74.1% in TNF-α and 64.1% in CCL2 at a concentration of 1 μM (Figure 6). Conclusion The continuous chemical investigation of the sponge A. cavernosa has resulted in the isolation of nine non-nitrogenous sesquiterpenoids, of which four optically pure compounds [(+)-1, (+)-4, (+)-5, and (−)-5] are

Efficient production of clerodane and ent-kaurane diterpenes through truncated artificial pathways in Escherichia coli

• Fang-Ru Li,
• Xiaoxu Lin,
• Qian Yang,
• Ning-Hua Tan and
• Liao-Bin Dong

Beilstein J. Org. Chem. 2022, 18, 881–888, doi:10.3762/bjoc.18.89

• produced new peaks in the HPLC profiles after a 3-day fermentation. Larger scale (3 L) fermentations of DL10004 and DL10006 led to the isolation of 45 mg and 90 mg of terpentetriene and ent-kaurene, respectively, whose 1H and 13C NMR spectra supported their chemical structures (Figures S4–S7 in Supporting

Identification of the new prenyltransferase Ubi-297 from marine bacteria and elucidation of its substrate specificity

• Jamshid Amiri Moghaddam,
• Huijuan Guo,
• Karsten Willing,
• Thomas Wichard and
• Christine Beemelmanns

Beilstein J. Org. Chem. 2022, 18, 722–731, doi:10.3762/bjoc.18.72

• pET28a(+) vectors were used, and E. coli BL21 was used as production host. Cultures were supplemented with ampicillin (100 µg mL−1) and kanamycin (60 µg mL−1) for the selection of plasmids. DNA isolation, PCR amplification, and cloning: gDNA of Maribacter sp. MS6 was extracted using DNeasy Blood & Tissue

A study of the photochemical behavior of terarylenes containing allomaltol and pyrazole fragments

• Constantine V. Milyutin,
• Andrey N. Komogortsev,
• Boris V. Lichitsky and
• Valeriya G. Melekhina

Beilstein J. Org. Chem. 2022, 18, 588–596, doi:10.3762/bjoc.18.61

• direction of the contraction of the pyranone ring leading to unstable α-hydroxydiketones. For the first time the possibility of isolation of the resulting α-hydroxydiketones in pure form was demonstrated. Wherein, it was shown that relatively low stable α-hydroxydiketones can be trapped by reaction with 1,2

• solvents excluding acetic acid, DMSO and DMF. Initially, UV irradiation of compound 12a was carried out at a wavelength of 365 nm in a solution of DMSO in common glassware for 24 h. However, subsequent water treatment did not allow the isolation of the target product 14a. Due to the fact that aqueous

• communication we have described for the first time the phototransformation of the 3-hydroxypyran-4-one fragment with the isolation of the resulting substituted α-hydroxy-1,2-diketone in pure form. The structure of the obtained compound 14a was confirmed using 1H, 13C NMR spectroscopy as well as 2D NMR

Terpenoids from Glechoma hederacea var. longituba and their biological activities

• Dong Hyun Kim,
• Song Lim Ham,
• Zahra Khan,
• Sun Yeou Kim,
• Sang Un Choi,
• Chung Sub Kim and
• Kang Ro Lee

Beilstein J. Org. Chem. 2022, 18, 555–566, doi:10.3762/bjoc.18.58

• compounds (1–5) were isolated and characterized from G. hederacea var. longituba (Figure 1). Structures of these compounds were established by 1D and 2D NMR and HRESIMS, comparison of experimental and calculated ECD data, DP4+ analysis, and hydrolysis. Herein, the isolation and structural elucidation of the

• School of Pharmacy, Sungkyunkwan University, Suwon, Korea. Extraction and isolation. The dried aerial parts of G. hederacea var. longituba (3.0 kg) were extracted with 80% MeOH (each 12.0 L × 1 day, 3 times) at room temperature and filtered. The filtrate was evaporated in vacuo to yield an 80% MeOH

Sesquiterpenes from the soil-derived fungus Trichoderma citrinoviride PSU-SPSF346

• Wiriya Yaosanit,
• Vatcharin Rukachaisirikul,
• Souwalak Phongpaichit,
• Sita Preedanon and
• Jariya Sakayaroj

Beilstein J. Org. Chem. 2022, 18, 479–485, doi:10.3762/bjoc.18.50

• , we report the isolation and structure elucidation as well as antimicrobial and cytotoxic activities of some isolated compounds which were obtained in sufficient amount. Results and Discussion Chemical investigation of the broth and mycelial extracts of T. citrinoviride PSU-SPSF346 by various

• chromatography techniques led to the isolation of two new sesquiterpenes, trichocitrinovirenes A (1) and B (2), four known structurally related sesquiterpenes including gliocladic acid (3), hydroheptelidic acid (4), and xylaric acids B (5) and D (6) [8], as well as one known γ-lactone, fusidilactone A (7) [9

• concentration of 50 μg/mL. Conclusion The investigation of the crude extracts of the soil-derived fungus T. citrinoviride PSU-SPSF346 resulted in the isolation of seven compounds including two new (1 and 2) and four known sesquiterpenes (3–6), and one known γ-lactone (7). Sesquiterpenes of this type were

Synthesis of 3,4,5-trisubstituted isoxazoles in water via a [3 + 2]-cycloaddition of nitrile oxides and 1,3-diketones, β-ketoesters, or β-ketoamides

• Md Imran Hossain,
• Md Imdadul H. Khan,
• Seong Jong Kim and
• Hoang V. Le

Beilstein J. Org. Chem. 2022, 18, 446–458, doi:10.3762/bjoc.18.47

• equivalents of DIPEA in 15 mL of 95% water, 5% methanol at room temperature for 2 hours. The yields were calculated after the isolation and purification of products. Reactions between various phenyl hydroximoyl chlorides and β-ketoesters or β-ketoamides. The reactions were performed with 0.5 mmol of 1, 0.5

• mmol of 2, and 3 equivalents of DIPEA in 15 mL of 95% water, 5% methanol at room temperature for 2 hours. The yields were calculated after the isolation and purification of products. Reactions between 4-fluorophenyl hydroximoyl chloride (1a) and diethyl malonate (2j) or dibenzyl malonate (2k) did not

Menadione: a platform and a target to valuable compounds synthesis

• Acácio S. de Souza,
• Ruan Carlos B. Ribeiro,
• Dora C. S. Costa,
• Fernanda P. Pauli,
• David R. Pinho,
• Matheus G. de Moraes,
• Fernando de C. da Silva,
• Luana da S. M. Forezi and
• Vitor F. Ferreira

Beilstein J. Org. Chem. 2022, 18, 381–419, doi:10.3762/bjoc.18.43

• ) [71]. The reaction was carried out in a two-phase solvent system under CO2 atmosphere and the best selectivity (89%) was achieved using H5PMo10V2O40. In the proposed mechanism, first the HPA-n was reduced by 17, followed by product isolation, and regeneration of HPA-n by dioxygen. The Kholdeeva group

Four bioactive new steroids from the soft coral Lobophytum pauciflorum collected in South China Sea

• Di Zhang,
• Zhe Wang,
• Xiao Han,
• Xiao-Lei Li,
• Zhong-Yu Lu,
• Bei-Bei Dou,
• Wen-Ze Zhang,
• Xu-Li Tang,
• Ping-Lin Li and
• Guo-Qiang Li

Beilstein J. Org. Chem. 2022, 18, 374–380, doi:10.3762/bjoc.18.42

• investigated the chemical constituents of the soft coral Lobophytum pauciflorum, collected from Xisha Island in the South China Sea. In the present paper, we describe the isolation of four new polyhydroxylated steroids lobophysterols E–H (1–4), together with three known compounds (5–7) (Figure 1). The

• particular, compound 1 also has a tetracyclic skeleton with a methyl group at C-4. The absolute configuration of 1–3 was determined by X-ray analysis. Herein, we report the isolation, structure elucidation, and bioactivities of these compounds. Results and Discussion Compound 1 was isolated as a white powder

• , National Museum of Marine Biology and Aquarium (NMMBA), Checheng, Pingtung 944, Taiwan, China. The voucher specimen (No. XS-2012-27), frozen at −20 °C, was deposited at the School of Medicine and Pharmacy, Ocean University of China, P. R. China. Extraction and isolation The frozen bodies of Lobophytum

Borylated norbornadiene derivatives: Synthesis and application in Pd-catalyzed Suzuki–Miyaura coupling reactions

• Robin Schulte and
• Heiko Ihmels

Beilstein J. Org. Chem. 2022, 18, 368–373, doi:10.3762/bjoc.18.41

• , only few examples of such monosubstituted compounds have been made available [31][34], and in most cases they have been reported as fairly unstable, which is in agreement with our observations during work-up and storage of the products. At the same time, this approach enabled the isolation and

Amamistatins isolated from Nocardia altamirensis

• Till Steinmetz,
• Wolf Hiller and
• Markus Nett

Beilstein J. Org. Chem. 2022, 18, 360–367, doi:10.3762/bjoc.18.40

• fermentations of N. altamirensis DSM 44997 were then carried out to secure sufficient material of the responsible iron chelator(s) for isolation and structure elucidation. The metabolites secreted into the culture broth were recovered post fermentation with the adsorber resin XAD-7. After removal of the culture

• as eluent. Fractions that showed a color change in the CAS assay were pooled and subjected to semipreparative reversed-phase HPLC. This led to the isolation of six CAS active compounds (1–6; Figure 1). The major metabolite 1 (12 mg) was obtained as a slight reddish oil. High resolution (HR) ESIMS

• added to the culture broth to bind the secreted metabolites. The resin was separated from the culture broth by filtration, washed with distilled water, and exhaustively extracted with methanol. Isolation of metabolites 1–6 The concentrated extract was first fractionated by flash column chromatography

Flow synthesis of oxadiazoles coupled with sequential in-line extraction and chromatography

• Kian Donnelly and
• Marcus Baumann

Beilstein J. Org. Chem. 2022, 18, 232–239, doi:10.3762/bjoc.18.27

• operations, the incorporation of the in-line purification system allowed for isolation of pure material in approximately 100 minutes (from substrate vial to pure product) on a 1 mmol scale. To determine the effect of scale on the system, 2j was processed on a 2 mmol scale (0.5 g) with no loss in efficiency

Trichloroacetic acid fueled practical amine purifications

• Aleena Thomas,
• Baptiste Gasch,
• Enzo Olivieri and
• Adrien Quintard

Beilstein J. Org. Chem. 2022, 18, 225–231, doi:10.3762/bjoc.18.26

• success. Keywords: amines; decarboxylation; eco-compatible; out of equilibrium; purification; Introduction Isolation of pure amines from reaction mixtures or natural extracts is crucial in modern organic chemistry. However, the most widely applied methods for these purifications have remained unchanged

• since the beginning of the 19th century as highlighted by the Sertürner isolation of morphine [4]. However, after formation of the amine acid (ammonium) salt and separation of the impurities, another separation is required to liberate again the free amine resulting in the undesired generation of waste

• Et3N (Table 1, entry 5). Overall, the TCA-induced purification protocol enables the convenient purification of the initial mixture with the isolation of pure dicyclohexylamine in an 94% yield. The excellent yield observed for the purification technique of this, high boiling amine, demonstrates all the

Glycosylated coumarins, flavonoids, lignans and phenylpropanoids from Wikstroemia nutans and their biological activities

• Meifang Wu,
• Xiangdong Su,
• Yichuang Wu,
• Yuanjing Luo,
• Ying Guo and
• Yongbo Xue

Beilstein J. Org. Chem. 2022, 18, 200–207, doi:10.3762/bjoc.18.23

• neuroprotective effects [6]. As part of a continuing study of our group targeting at the identification of bioactive natural products from the medicinal plants and endophytes [7][8], the chemical constituents of the stems and roots of W. nutans were investigated. This work resulted into the isolation and

• identification of a new bis-coumarin glucoside 1, together with three known bis- and tricoumarin glucosides 2–4, two flavonoid glycosides 5 and 6, and eleven lignan glucosides 7–17 (Figure 1). Herein, we present the isolation and structural elucidation of these natural products and their in vitro biological

• antimicrobial activities. This is the first report of the isolation of coumarins, flavonoids, lignans and phenylpropanoid glycosides from W. nutans, while compounds 1–3, 8, and 11 was encountered from the genus Wikstroemia for the first time. Our work will enrich the chemistry and structure diversity of natural

Tenacibactins K–M, cytotoxic siderophores from a coral-associated gliding bacterium of the genus Tenacibaculum

• Yasuhiro Igarashi,
• Yiwei Ge,
• Tao Zhou,
• Amit Raj Sharma,
• Enjuro Harunari,
• Naoya Oku and
• Agus Trianto

Beilstein J. Org. Chem. 2022, 18, 110–119, doi:10.3762/bjoc.18.12

• peaks resulted in the isolation of tenacibactins K (1), L (2), and M (3). Compound 1 was obtained as a pale brown powder. HR–ESITOFMS analysis confirmed the molecular formula of 1 to be C33H61N5O8 based on a deprotonated molecular ion [M − H]− at m/z 654.4449 (Δ + 0.2 mmu for C33H60N5O8) and a sodium

• inoculated flasks were placed on a rotary shaker (200 rpm) at 30 °C for 7 days. Extraction and isolation At the end of the fermentation period, 100 mL of 1-butanol were added to each flask and the flasks were shaken for 1 h. The mixture was centrifuged at 6000 rpm for 10 min and the organic layer was

Regioselective synthesis of methyl 5-(N-Boc-cycloaminyl)-1,2-oxazole-4-carboxylates as new amino acid-like building blocks

• Jolita Bruzgulienė,
• Greta Račkauskienė,
• Aurimas Bieliauskas,
• Vaida Milišiūnaitė,
• Miglė Dagilienė,
• Gita Matulevičiūtė,
• Vytas Martynaitis,
• Sonata Krikštolaitytė,
• Frank A. Sløk and
• Algirdas Šačkus

Beilstein J. Org. Chem. 2022, 18, 102–109, doi:10.3762/bjoc.18.11

• Meldrum’s acid in the presence of EDC·HCl and DMAP, followed by methanolysis of the corresponding adducts [27][28][31][36][37][38]. Reaction of the resulting β-keto esters 2a–h with N,N-dimethylformamide dimethylacetal afforded cycloaminyl β-enamino ketoesters 3a–h. After isolation of compounds 3a–h from

The enzyme mechanism of patchoulol synthase

• Houchao Xu,
• Bernd Goldfuss,
• Gregor Schnakenburg and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2022, 18, 13–24, doi:10.3762/bjoc.18.2

• reactivated by protonation for further cyclisation steps, while previously discussed intra- and intermolecular hydrogen transfers are not supported. Furthermore, the isolation of the new natural product (2S,3S,7S,10R)-guaia-1,11-dien-10-ol from patchouli oil is reported. Keywords: biosynthesis; DFT

• migrations via I to J would indeed be much easier. The final transformations involving two Wagner–Meerwein rearrangements through G and D can proceed smoothly. Isolation of guaia-1,11-dien-1-ol from patchouli oil Fractionation of patchouli oil by column chromatography resulted in the isolation of the new

Stepwise PEG synthesis featuring deprotection and coupling in one pot

• Logan Mikesell,
• Dhananjani N. A. M. Eriyagama,
• Yipeng Yin,
• Bao-Yuan Lu and
• Shiyue Fang

Beilstein J. Org. Chem. 2021, 17, 2976–2982, doi:10.3762/bjoc.17.207

• one pot. The deprotonation step, and the isolation and purification of the intermediate product after deprotection using existing approaches are no longer needed when the one-pot approach is used. Because the stepwise PEG synthesis usually requires multiple PEG elongation cycles, the new PEG synthesis

• stepwise PEG synthesis requires to repeat the PEG elongation cycle multiple times, shortening each cycle from two pots to one pot can make PEG synthesis significantly more convenient, which can render monodisperse PEGs more affordable. In addition, the omission of the isolation and purification of an

Unsaturated fatty acids and a prenylated tryptophan derivative from a rare actinomycete of the genus Couchioplanes

• Shun Saito,
• Kanji Indo,
• Naoya Oku,
• Hisayuki Komaki,
• Masashi Kawasaki and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2021, 17, 2939–2949, doi:10.3762/bjoc.17.203

• resulted in the isolation of five new methyl-branched unsaturated fatty acids, (2E,4E)-2,4-dimethyl-2,4-octadienoic acid (1), (2E,4E)-2,4,7-trimethyl-2,4-octadienoic acid (2), (R)-(−)-phialomustin B (3), (2E,4E)-7-hydroxy-2,4-dimethyl-2,4-octadienoic acid (4), (2E,4E)-7-hydroxy-2,4,7-trimethyl-2,4

• days. Isolation of compounds 1–5 Compounds 1–5 were obtained from a culture fermented in A16 production medium with a composition of glucose 2%, Pharmamedia® (Traders Protein, Memphis, TN, USA) 1%, and CaCO3 0.5%. The pH of the medium was adjusted to 7.0 before autoclaving. At the end of fermentation

• , 221.1148; found, 221.1149. Isolation of 6 Compound 6 was obtained from a culture fermented in modified V22 production medium with a composition of soluble starch 1%, glucose 0.5%, NZ Amine, Type A 0.3%, yeast extract 0.2%, Tryptone 0.5% K2HPO4 0.1%, MgSO4·7H2O 0.05%, and CaCO3 0.3%. The pH of the medium

A photochemical C=C cleavage process: toward access to backbone N-formyl peptides

• Haopei Wang and
• Zachary T. Ball

Beilstein J. Org. Chem. 2021, 17, 2932–2938, doi:10.3762/bjoc.17.202

• 4 and 5 are C9 compounds possibly derived from thermal or photochemical rearrangement of compound 3 or another intermediate. The yield of each product was calculated by NMR and verified by isolation (Figure 2). To test the generality of this process with other functional groups, we prepared and

• pathways involving the intermediacy of 8. To provide additional support for this analysis, and to assess the stability of N-formyl amides formed in this reaction, we irradiated alkenyl amide 10, which contains a 2-phenylethyl substituent that allowed easier isolation of N-formyl 11 (Figure 4). After

• then account for the isolation of the acetylated analogue 9. The photochemical pathway described here represents a formal oxidative olefin cleavage of vinylogous nitroaryl-modified amides and ethers. The pathway adds to the diversity of photochemical pathways known for 2-nitrophenyl systems, and the