Beyond ribose and phosphate: Selected nucleic acid modifications for structure–function investigations and therapeutic applications

• Christopher Liczner,
• Kieran Duke,
• Gabrielle Juneau,
• Martin Egli and
• Christopher J. Wilds

Beilstein J. Org. Chem. 2021, 17, 908–931, doi:10.3762/bjoc.17.76

• phosphorothioate Rp-stereoisomer (Rp-PS, i.e., phosphate with one of the non-bridging oxygens replaced by sulfur) in bacterial genomes, where it may serve a protective role against nucleases [4] and its loss results in genomic instability [5]. There are over a hundred known base modifications in RNA and the Rp-PS

• monobenzoylethanedithiol. The 3'-phosphorothioamidites are incorporated into an oligonucleotide by standard solid-phase synthesis conditions, however, the oxidation step is replaced with sulfurization by elemental sulfur (Scheme 2) [85]. It should be noted that more efficient sulfurization agents exist with faster

• in the vicinity of a hydrophobic patch that is surrounded by lysine and arginine residues [15]. The latter generate an electric field that could polarize sulfur atoms (the PS2 group still carries a negative charge), thereby enhancing the interaction of the PS2 moiety with the edge of phenylalanine as

Highly regio- and stereoselective phosphinylphosphination of terminal alkynes with tetraphenyldiphosphine monoxide under radical conditions

• Dat Phuc Tran,
• Yuki Sato,
• Yuki Yamamoto,
• Shin-ichi Kawaguchi,
• Shintaro Kodama,
• Akihiro Nomoto and
• Akiya Ogawa

Beilstein J. Org. Chem. 2021, 17, 866–872, doi:10.3762/bjoc.17.72

• was complete, sulfur (3 equiv) was added under inert atmosphere and then the mixture was stirred at 60 °C for 6 h to provide the stable adduct 3. The purification of the products was performed by silica gel column chromatography using isohexane/MeOAc as an eluent. Radical addition of Ph2PPPh2 and Ph2P

A chromatography-free and aqueous waste-free process for thioamide preparation with Lawesson’s reagent

• Ke Wu,
• Yichen Ling,
• An Ding,
• Liqun Jin,
• Nan Sun,
• Baoxiang Hu,
• Zhenlu Shen and
• Xinquan Hu

Beilstein J. Org. Chem. 2021, 17, 805–812, doi:10.3762/bjoc.17.69

• ; thioamide; thionation; Introduction The transformation of a carbonyl into a thiocarbonyl group is one of the most important reactions in organic synthetic chemistry [1]. Lawesson’s reagent (LR) is widely applied in this transformation, as well as for the syntheses of various sulfur-containing heterocyclic

Synthetic reactions driven by electron-donor–acceptor (EDA) complexes

• Zhonglie Yang,
• Yutong Liu,
• Kun Cao,
• Xiaobin Zhang,
• Hezhong Jiang and
• Jiahong Li

Beilstein J. Org. Chem. 2021, 17, 771–799, doi:10.3762/bjoc.17.67

• of N-heterocyclic compounds. In 2017, Wu and colleagues [58] uncovered the use of the bis(sulfur dioxide) adduct of DABCO, 1,4-diazabicyclo[2.2.2]octane·(SO2)2, as sulfone source in the EDA complex formation by 4-methyl-1-(p-tolyl)pentan-1-one O-(2,4-dinitrophenyl)oxime (11) towards the

• atom transfer) occurs in nitrogen radical 14 to give radical 16, which further transforms to radical 17 after the addition of sulfur dioxide. Finally, HAT happens between 15 and 17, yielding quaternary ammonium salt 18 and product 12, respectively. In 2017, Chen and colleagues [47] accomplished the

Synthesis, structural characterization, and optical properties of benzo[f]naphtho[2,3-b]phosphoindoles

• Mio Matsumura,
• Takahiro Teramoto,
• Masato Kawakubo,
• Masatoshi Kawahata,
• Yuki Murata,
• Kentaro Yamaguchi,
• Masanobu Uchiyama and
• Shuji Yasuike

Beilstein J. Org. Chem. 2021, 17, 671–677, doi:10.3762/bjoc.17.56

• phosphorus atom of 2 was carried out; the results are shown in Scheme 1. The reaction of 2 with hydrogen peroxide or elemental sulfur afforded the corresponding phosphine oxide 3 and sulfide 4 in 92% and 88% yield, respectively. Treatment of 2 with methyl triflate afforded phospholium triflate 5 in 81% yield

• (Figure 4). The HOMO and HOMO−1 levels of oxide 3 are delocalized in the π orbitals of the benzonaphthophosphoindole skeleton, while HOMO−2 and HOMO−3 have a large contribution from the lone-pair and π orbitals. In sulfide 4, the sulfur analog of the oxide 3, the HOMO and HOMO−1 energy levels are

• delocalized in the lone-pair orbitals on the sulfur atom, resulting in considerable destabilization and significantly small HOMO–LUMO gap compared to those of other phospholes 2, 3, 5, and 6. This result is similar to the reduction potentials of compounds 2 and 6. According to time-dependent DFT calculations

Breakdown of 3-(allylsulfonio)propanoates in bacteria from the Roseobacter group yields garlic oil constituents

• Anuj Kumar Chhalodia and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2021, 17, 569–580, doi:10.3762/bjoc.17.51

• -(allylmethylsulfonio)propanoate (AllMSP), were synthesized and fed to marine bacteria from the Roseobacter clade. These bacteria are able to degrade DMSP into dimethyl sulfide and methanethiol. The DMSP analogues were also degraded, resulting in the release of allylated sulfur volatiles known from garlic. For unknown

• (Scheme 1A) [2]. The antibacterial principle in garlic was identified in 1944 by Cavallito et al. as allicin (5) [3], a formal oxidation product of disulfide 2. Not only 5, but also several other sulfur compounds from garlic are today known to exhibit diverse biological activities, including inter alia

• antibacterial, antifungal, antioxidant, anti-inflammatory, and anticancer effects [4]. Later on, also heterocyclic compounds including 2-vinyl-4H-1,3-dithiine (6) and 3-vinyl-3,4-dihydro-1,2-dithiine (7) were discovered [5]. The formation of these volatile sulfur compounds starts from alliin (9) [6], a non

Metal-free visible-light-enabled vicinal trifluoromethyl dithiolation of unactivated alkenes

• Xiaojuan Li,
• Qiang Zhang,
• Weigang Zhang,
• Jinzhu Ma,
• Yi Wang and
• Yi Pan

Beilstein J. Org. Chem. 2021, 17, 551–557, doi:10.3762/bjoc.17.49

• in natural products, drug molecules, biologically active molecules, and functional materials. However, the highly selective incorporation of two different sulfur-bearing moieties across double bonds remains challenging [42]. Herein, we describe a visible-light-enabled cascade radical

• -induced cascade radical difunctionalization of unactivated alkenes to provide partially trifluoromethylated dithioethers. The approach features practical conditions, good functional group tolerance, and a broad substrate scope allowing the incorporation of two distinctive sulfur-containing motifs into

Synthesis of (Z)-3-[amino(phenyl)methylidene]-1,3-dihydro-2H-indol-2-ones using an Eschenmoser coupling reaction

• Lukáš Marek,
• Lukáš Kolman,
• Jiří Váňa,
• Jan Svoboda and
• Jiří Hanusek

Beilstein J. Org. Chem. 2021, 17, 527–539, doi:10.3762/bjoc.17.47

• high amounts of the undesirable isoindigo 9a [32] (route c). In order to accelerate the Eschenmoser coupling reaction and to enhance the reaction yield (route b) an addition of a suitable thiophile assisting the sulfur extrusion should be beneficial [36]. Therefore, we tested two P(III) compounds as

Synthetic strategies of phosphonodepsipeptides

• Jiaxi Xu

Beilstein J. Org. Chem. 2021, 17, 461–484, doi:10.3762/bjoc.17.41

• phosphonodepsithioxopeptides 198 via the reaction of N-protected aminoalkylphosphonochloridites 196 with the hydroxy ester (S)-106b followed by sulfur oxidation. They first transformed the N-Boc-protected 1-aminoalkylphosphinate 195 to the corresponding phosphonochloridite 196 with dichlorotriphenylphosphorane. The

• phosphonochloridite 196 was then further reacted with methyl (S)-lactate ((S)-106b) followed by sulfurization with sulfur, affording the phosphonodepsithioxopeptide 198 in a one-pot activation–coupling–oxidation procedure (Scheme 36) [55]. Although it was mentioned that the phosphonochloridites were a more active

Synthesis of trifluoromethyl ketones by nucleophilic trifluoromethylation of esters under a fluoroform/KHMDS/triglyme system

• Yamato Fujihira,
• Yumeng Liang,
• Makoto Ono,
• Kazuki Hirano,
• Takumi Kagawa and
• Norio Shibata

Beilstein J. Org. Chem. 2021, 17, 431–438, doi:10.3762/bjoc.17.39

• effect on the yield of the reaction of 1g (Table 2, entries 3–6, 58–72%). Next, a range of common oxygen and sulfur-containing compounds such as furan, tetrahydrofuran, 1,4-dioxane, thiophene, benzo[b]thiophene, dibenzo[b,d]thiophene, and diphenylsulfane were also screened. These substances also have

Identification of volatiles from six marine Celeribacter strains

• Anuj Kumar Chhalodia,
• Jan Rinkel,
• Dorota Konvalinkova,
• Jörn Petersen and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2021, 17, 420–430, doi:10.3762/bjoc.17.38

• , Inhoffenstraße 7b, 38124 Braunschweig, Germany 10.3762/bjoc.17.38 Abstract The volatiles emitted from six marine Rhodobacteraceae species of the genus Celeribacter were investigated by GC–MS. Besides several known compounds including dimethyl trisulfide and S-methyl methanethiosulfonate, the sulfur-containing

• compound is likely of anthropogenic origin, because 2-mercaptobenzothiazole is used in the sulfur vulcanization of rubber. Also in none of the feeding experiments incorporation into ethyl (E)-3-(methylsulfanyl)acrylate could be observed, questioning its bacterial origin. Our results demonstrate that the

• Celeribacter strains are capable of methionine and DMSP degradation to widespread sulfur volatiles, but the analysis of trace compounds in natural samples must be taken with care. Keywords: GC–MS; isotopes; Roseobacter; sulfur metabolism; volatiles; Introduction Bacteria from the roseobacter group belong to

Helicene synthesis by Brønsted acid-catalyzed cycloaromatization in HFIP [(CF₃)₂CHOH]

• Takeshi Fujita,
• Noriaki Shoji,
• Nao Yoshikawa and
• Junji Ichikawa

Beilstein J. Org. Chem. 2021, 17, 396–403, doi:10.3762/bjoc.17.35

• /cycloaromatization sequence (Scheme 3a, route a). Thus, hetero[4]-, [5]-, and [6]helicenes involving an oxygen, sulfur, or nitrogen atom were efficiently synthesized (Scheme 6). Hetero[4]helicenes 9 were synthesized via coupling of 3-bromobenzoheteroles 10, prepared from commercially available benzoheteroles, and

CF₃-substituted carbocations: underexploited intermediates with great potential in modern synthetic chemistry

• Anthony J. Fernandes,
• Armen Panossian,
• Bastien Michelet,
• Agnès Martin-Mingot,
• Frédéric R. Leroux and
• Sébastien Thibaudeau

Beilstein J. Org. Chem. 2021, 17, 343–378, doi:10.3762/bjoc.17.32

• . This observation suggests that lutidine allows the isomerization of 90 into 93, followed by a nucleophilic attack of the solvent at the sulfur atom (Scheme 25). The reactivity of analogous monotrifluoromethyl-substituted allyl derivatives 94, bearing an aryl group in the vinylic position was also

• treatment with strong Lewis acids (best with AlCl3) [139]. In this case, the only product formed in the course of the reaction was 205, isolated in 83% yield (Scheme 50). The proposed cationic intermediate in this reaction is a sulfur-stabilized α-(trifluoromethyl)carbenium ion 206 (an α-(trifluoromethyl

• )-substituted sulfonium cation). Analogous to thioacetals 204a, chloroalkylthio derivatives 207a–c, bearing an adjacent CF3 group, were also investigated [140]. It appeared that a sulfur-stabilized α-(trifluoromethyl)carbenium ion 208 can be generated from 207a by chloride abstraction following Lewis acid

Annulation of a 1,3-dithiole ring to a sterically hindered o-quinone core. Novel ditopic redox-active ligands

• Sergey V. Norkov,
• Anton V. Cherkasov,
• Andrey S. Shavyrin,
• Maxim V. Arsenyev,
• Viacheslav A. Kuropatov and
• Vladimir K. Cherkasov

Beilstein J. Org. Chem. 2021, 17, 273–282, doi:10.3762/bjoc.17.26

• Supporting Information File 1). At the same time, the plane of the six-membered o-quinone ring is slightly distorted in order to weaken the steric strain effects of the tert-butyl groups and neighboring carbonyl oxygens/dithiole sulfur atoms. Such distortion is typical of sterically hindered o-quinones and

• intramolecular contacts with the sulfur atoms. The S(1)–O(2) distance (Figure S4 in Supporting Information File 1) is 2.560(2) Å, it is less than the sum of the van der Waals radii. A very similar geometry was previously observed in the case of the acetylacetonate unit attached to a 1,3-dithiole ring [31]. o

• bulky sulfur-containing group. The possible pathway for the following cyclization is the Michael addition of the sulfide atom to the central carbon of the acetylacetonate group [38][39][40][41]. The X-ray diffraction study as well as IR and NMR spectroscopy data reveal that in all synthesized compounds

Selective synthesis of α-organylthio esters and α-organylthio ketones from β-keto esters and sodium S-organyl sulfurothioates under basic conditions

• Jean C. Kazmierczak,
• Roberta Cargnelutti,
• Thiago Barcellos,
• Claudio C. Silveira and
• Ricardo F. Schumacher

Beilstein J. Org. Chem. 2021, 17, 234–244, doi:10.3762/bjoc.17.24

• rediscovered by many researchers as stable, nonhygroscopic, and moisture-resistant thiolating agents. Therefore, they have been actively studied as precursors for the preparation of diverse sulfur-containing compounds [1]. These recent findings include their use in direct sulfenylation reactions of electron

• sulfides by the acetamidosulfenylation of alkenes [12], among others [13][14][15]. Sulfur-containing compounds are important intermediates in organic synthesis, being able to act as an electrophile or nucleophile in many organic transformations [16][17][18]. Still, many of them are pharmacologically active

• ) and herbicidal applications (fluthiacet-methyl) [37][38]. In this sense, the development of efficient methodologies for the synthesis of sulfur-containing carbonyl compounds employing cheap, stable, nontoxic, easy-to-prepare, and easy-to-handle starting materials is crucial in contemporary organic

Decarboxylative trifluoromethylthiolation of pyridylacetates

• Ryouta Kawanishi,
• Kosuke Nakada and
• Kazutaka Shibatomi

Beilstein J. Org. Chem. 2021, 17, 229–233, doi:10.3762/bjoc.17.23

• mechanism for this reaction, as outlined in Scheme 5. An electrophilic sulfur atom of 6 approaches the nitrogen atom on the pyridine ring to promote decarboxylation via the formation of N-trifluoromethylthio-2-alkylidene-1,2-dihydropyridine intermediate I, which immediately isomerizes to afford 2 (Scheme 5

Exploring the possibility of using fluorine-involved non-conjugated electron-withdrawing groups for thermally activated delayed fluorescence emitters by TD-DFT calculation

• Dongyang Chen and
• Eli Zysman-Colman

Beilstein J. Org. Chem. 2021, 17, 210–223, doi:10.3762/bjoc.17.21

• also been attributed by Duan et al. to much higher SOCME values in a sulfur-containing emitter than in analogs without the sulfur atom present [37]. The |VSOC|2 values of 5CzBN and 5CzBP increased to 0.298 cm−2 and 0.267 cm−2, respectively, which are more than one hundred times higher than 2CzBN and

A sustainable strategy for the straightforward preparation of 2H-azirines and highly functionalized NH-aziridines from vinyl azides using a single solvent flow-batch approach

• Michael Andresini,
• Leonardo Degannaro and
• Renzo Luisi

Beilstein J. Org. Chem. 2021, 17, 203–209, doi:10.3762/bjoc.17.20

• olefins [13][14]. Aziridines are otherwise accessible from a variety of acyclic precursors [15][16][17], even stereoselectively [18][19][20], and through derivatization of 2H-azirines. The reactions using 2H-azirines as electrophiles proceed with several nitrogen, oxygen and sulfur nucleophiles, enabling

Deoxyfluorination of acyl fluorides to trifluoromethyl compounds by FLUOLEAD^®/Olah’s reagent under solvent-free conditions

• Yumeng Liang,
• Akihito Taya,
• Zhengyu Zhao,
• Norimichi Saito and
• Norio Shibata

Beilstein J. Org. Chem. 2020, 16, 3052–3058, doi:10.3762/bjoc.16.254

• carboxylic acids with sulfur tetrafluoride (SF4) at 120 to 150 °C in liquid hydrogen fluoride (HF) (Scheme 1c). Very recently, Mykhailiuk [28][29] improved the method to use SF4 for the deoxofluorination of carboxylic acids with or without HF in the gram scale (Scheme 1c). Although Mykhailiuk’s protocol is

• toxic sulfur tetrafluoride [32] and the explosive (diethylamino)sulfur trifluoride (DAST) [33]. Although the 2010 report by Umemoto provided a method for the deoxyfluorination of a wide variety of substrates, including alcohols, ketones, and even carboxylic acids to the mono-, di-, and trifluoromethyl

Metal-free nucleophilic trifluoromethylselenolation via an iodide-mediated umpolung reactivity of trifluoromethylselenotoluenesulfonate

• Kevin Grollier,
• Alexis Taponard,
• Arnaud De Zordo-Banliat,
• Emmanuel Magnier and
• Thierry Billard

Beilstein J. Org. Chem. 2020, 16, 3032–3037, doi:10.3762/bjoc.16.252

• ). Other solvents, which led also to satisfactory yields in the “sulfur series” were then tested. Acetonitrile did not improve the yield, however, a better one was obtained in THF (Table 1, entries 2 and 3). Interestingly, a shorter reaction time (4 h instead of 15 h) provided similar results (Table 1

• substitution. This is adequate with the observed results. Noteworthy, the supposed formation of I2 was strengthened by the appearance of a red-brown color of the reaction media which faded after the addition of sodium thiosulfate. As demonstrated in the sulfur series [49], the in situ formation of an alkyl

All-carbon [3 + 2] cycloaddition in natural product synthesis

• Zhuo Wang and
• Junyang Liu

Beilstein J. Org. Chem. 2020, 16, 3015–3031, doi:10.3762/bjoc.16.251

• take place. The use of noncyclic analogues did not give the cycloaddition product. It is suggested that the restricted rotational freedom of 151 and the related enforced conjugation of the sulfur lone pair may block certain undesired cation reactions. Cycloaddition product 154 was subjected to the

Controlled decomposition of SF₆ by electrochemical reduction

• Sébastien Bouvet,
• Bruce Pégot,
• Stéphane Sengmany,
• Erwan Le Gall,
• Eric Léonel,
• Anne-Marie Goncalves and
• Emmanuel Magnier

Beilstein J. Org. Chem. 2020, 16, 2948–2953, doi:10.3762/bjoc.16.244

• +/Fc. The exact number of electrons for the full consumption of sulfur hexafluoride was determined and this gas further quantitatively transformed into environmentally benign fluoride anion and sulfur by electrochemical reduction. Keywords: electroreduction; fluoride anion; redox potential; sulfur

• hexafluoride; Introduction Sulfur hexafluoride (SF6) is a fluorinated gas firstly identified in 1900 by Henry Moissan [1]. The strategy applied at industrial level to obtain SF6 uses sulfur in the presence of molecular fluorine. Sulfur hexafluoride possesses the particularity of being an inert gas both

• reactive, corrosive and toxic [12]. Recent and really impressive works were devoted to the decomposition of sulfur hexafluoride using stoichiometric or catalytic amounts of metals (Rh, Ni, Pt) [13][14][15][16]. Organic derivatives (phosphines or bipyridine) proved efficient tools for the selective

Regioselective synthesis of heterocyclic N-sulfonyl amidines from heteroaromatic thioamides and sulfonyl azides

• Vladimir Ilkin,
• Vera Berseneva,
• Tetyana Beryozkina,
• Tatiana Glukhareva,
• Lidia Dianova,
• Wim Dehaen,
• Eugenia Seliverstova and
• Vasiliy Bakulev

Beilstein J. Org. Chem. 2020, 16, 2937–2947, doi:10.3762/bjoc.16.243

• synthesis of various types of sulfur containing heterocyclic compounds [43][44][45][46][47]. This gives some promise to the development of a general and efficient method for the synthesis of N-sulfonyl amidines of heteroaromatic acids based on the reaction of heterocyclic thioamides with higly electrophilic

• sulfonyl azides. With the purpose of the synthesis of heterocyclic N-sulfonyl amidines bearing various heteroatoms in the ring, namely nitrogen, sulfur and oxygen atoms, we have studied reactions of thioamides of 1,2,3-triazole-, isoxazole-, thiazolecarboxylic acids and 2,5-dithiocarbamoylpyridine with

• form can be explained by steric hindrance between the phenyl and the arylsulfonyl groups. Because of the observed evolution of nitrogen and sulfur in every reaction of heterocyclic thioamides and sulfonyl azides it is logic to propose the formation of a thiatriazole ring via [3 + 2] cycloaddition of

A novel and robust heterogeneous Cu catalyst using modified lignosulfonate as support for the synthesis of nitrogen-containing heterocycles

• Bingbing Lai,
• Meng Ye,
• Ping Liu,
• Minghao Li,
• Rongxian Bai and
• Yanlong Gu

Beilstein J. Org. Chem. 2020, 16, 2888–2902, doi:10.3762/bjoc.16.238

• acid-base titration and elemental analysis, respectively (Table 3). The results showed that the density of –SO3H determined by acid-base titration was much lower than that confirmed by elemental analysis, indicating that a portion of sulfur existed in the form of Cu complex and –SO3Na. Afterwards, the

Synthesis of purines and adenines containing the hexafluoroisopropyl group

• Viacheslav Petrov,
• Rebecca J. Dooley,
• Alexander A. Marchione,
• Elizabeth L. Diaz,
• Brittany S. Clem and
• William Marshall

Beilstein J. Org. Chem. 2020, 16, 2739–2748, doi:10.3762/bjoc.16.224

• equivalent of elemental sulfur (Scheme 1). A crude mixture of 2a and 2b (ratio 70:30) was isolated in 78% yield. Since the minor isomer 2b had a significantly higher solubility in hexane, washing of the crude mixture with hexane resulted in an enrichment of the major isomer 2a (ratio 2a/2b 95:5 after washing

• HFTA and imidazole. In this case, the reaction can proceed through the attack of a nitrogen atom of the imidazole ring at the carbon atom of the C=S bond, leading to the formation of the zwitterion B (Scheme 6). The transfer of a proton from the nitrogen atom to the sulfur atom leads to the formation

• of thiol C, which can lose sulfur, giving rise to the final product. Because of the unsymmetrical nature of substrate A, the attack on the C=S bond of HFTA proceeds by either nitrogen atom of the imidazole ring, resulting in the formation of two isomers for compounds 2–4 and 7. The highly selective