A selective and mild glycosylation method of natural phenolic alcohols

• Mária Mastihubová and
• Monika Poláková

Beilstein J. Org. Chem. 2016, 12, 524–530, doi:10.3762/bjoc.12.51

• an iodobromonium ion) results in a carbohydrate-derived oxocarbonium ion that functions as the reactive intermediate [35]. In the first step, acceptor 6b and glucopyranosyl bromide 13 as the donor were selected and tested in the presence of the above mentioned promoters (see Table 1, entries 1–4) in

Recent advances in N-heterocyclic carbene (NHC)-catalysed benzoin reactions

• Rajeev S. Menon,
• Akkattu T. Biju and
• Vijay Nair

Beilstein J. Org. Chem. 2016, 12, 444–461, doi:10.3762/bjoc.12.47

• influence of these catalysts on the diastereoselectivity of the reaction was also studied using NMR techniques. An NHC-catalysed intramolecular benzoin condensation of carbohydrate-derived dialdehydes has been applied for the construction of carbocyclic sugars. Diastereoselective benzoin reactions of manno

• enals and β-oxo sulfones. Intramolecular benzoin condensation of carbohydrate-derived dialdehydes. Enantioselective intramolecular benzoin reactions of N-tethered keto-aldehydes. Asymmetric cross-benzoin reactions promoted by camphor-derived catalysts. NHC-Brønsted base co-catalysis in a benzoin–Michael

Self and directed assembly: people and molecules

• Tony D. James

Beilstein J. Org. Chem. 2016, 12, 391–405, doi:10.3762/bjoc.12.42

• group were developing carbohydrate receptors from what looked like simple molecules requiring just one or two steps to synthesize. Therefore, while working with the late Takaaki Harada, we developed a simple colorimetric system able to “read-out” the chirality of sugars. The system we developed used the

Natural products from microbes associated with insects

• Christine Beemelmanns,
• Huijuan Guo,
• Maja Rischer and
• Michael Poulsen

Beilstein J. Org. Chem. 2016, 12, 314–327, doi:10.3762/bjoc.12.34

• monophyletic termite subfamily Macrotermitinae propagates a basidiomycete fungal cultivar Termitomyces, which serves as a major food source for the termite colony [90]. The domestication of Termitomyces facilitates an increase in carbohydrate decomposition capacity relative to that of other higher termites [91

Spiro-fused carbohydrate oxazoline ligands: Synthesis and application as enantio-discrimination agents in asymmetric allylic alkylation

• Jochen Kraft,
• Martin Golkowski and
• Thomas Ziegler

Beilstein J. Org. Chem. 2016, 12, 166–171, doi:10.3762/bjoc.12.18

• benchmark test for selectivity, the palladium-catalyzed asymmetric addition of dimethyl malonate to 1,3-diphenylallyl acetate was often used in the literature for testing the scope of carbohydrate derived ligands for this purpose [9][10][11][12][13]. For instance, Kunz and Gläser have demonstrated the

• stereo-differentiating potential of carbohydrate ligands in this type of reaction where their gluco-PHOX ligand, derived from glucosamine, resulted in a high enantiomeric excess of up to 98% [14]. Recently, Vidal et al. reported on a spiro-bis(isooxazoline) ligand A (Figure 1) [15] prepared via 1,3

• substitution product only in traces. The authors attributed the inefficiency of ligand A to the cleavage of the spiro moiety resulting in the formation of thermodynamically more stable aromatic isoxazole B (Figure 1). As part of our ongoing research program towards the design of carbohydrate derived ligands

Exploring architectures displaying multimeric presentations of a trihydroxypiperidine iminosugar

• Camilla Matassini,
• Stefania Mirabella,
• Andrea Goti,
• Inmaculada Robina,
• Antonio J. Moreno-Vargas and
• Francesca Cardona

Beilstein J. Org. Chem. 2015, 11, 2631–2640, doi:10.3762/bjoc.11.282

• glycosidases. Keywords: dendrimers; glycosidase inhibitors; iminosugars; multivalency; piperidine alkaloids; Introduction Iminosugars are well-known naturally occurring glycomimetics with a nitrogen atom replacing the endocyclic oxygen, mainly recognized as inhibitors of carbohydrate-processing enzymes

• (glycosidases) [1][2]. In quite sharp contrast the multivalent effect, widely investigated in the field of carbohydrate–lectin interactions [3], has remained essentially unexplored concerning glycosidase inhibition up to 2010. Indeed, the first examples of multivalent iminosugars gave disappointing results in

Synthesis of bi- and bis-1,2,3-triazoles by copper-catalyzed Huisgen cycloaddition: A family of valuable products by click chemistry

• Zhan-Jiang Zheng,
• Ding Wang,
• Zheng Xu and
• Li-Wen Xu

Beilstein J. Org. Chem. 2015, 11, 2557–2576, doi:10.3762/bjoc.11.276

• mild conditions without the Cu(І). Notably, the CuAAC reaction between the terminal alkyne of 36 and various azides provided the desired bistriazoles 37 in good yield (Scheme 14). Bistriazoles have potential application in the synthesis of surfactants after introducing the carbohydrate moiety. In 2012

Versatile synthesis and biological evaluation of novel 3’-fluorinated purine nucleosides

• Hang Ren,
• Haoyun An,
• Paul J. Hatala,
• William C. Stevens Jr,
• Jingchao Tao and
• Baicheng He

Beilstein J. Org. Chem. 2015, 11, 2509–2520, doi:10.3762/bjoc.11.272

• ’-difluorocytidine has been routinely utilized to treat solid tumors [30]. However, 3’-fluorine-modified nucleosides have not been well-studied because of the challenges associated with the synthesis of modified carbohydrate moieties [31][32][33][34][35]. As a result, 3’-fluoro-6-heterocyclic-substituted purine

• the protecting groups [35]. Compound 2 has also been synthesized starting from xylofuranoside by manipulating the protecting groups on the carbohydrate moiety [36]. De Clercq and co-workers [37] developed a protocol for the synthesis of 3’-fluororibofuranose in 10 steps, and it requires epoxide

Biocatalysis for the application of CO₂ as a chemical feedstock

• Apostolos Alissandratos and
• Christopher J. Easton

Beilstein J. Org. Chem. 2015, 11, 2370–2387, doi:10.3762/bjoc.11.259

• (RuBisCO). The glycerate 2 is subsequently phosphorylated with ATP for the production of 1,3-bisphosphoglycerate (3), which is in turn reduced with NADPH to 3-phosphoglyceraldehyde (4). For every six equivalents of the aldehyde 4, one is diverted to carbohydrate biosynthesis, while the other five are used

Synthesis of D-fructose-derived spirocyclic 2-substituted-2-oxazoline ribosides

• Madhuri Vangala and
• Ganesh P. Shinde

Beilstein J. Org. Chem. 2015, 11, 2289–2296, doi:10.3762/bjoc.11.249

• in toluene through nucleophilic addition of electron-rich nitriles to the oxacarbenium ion intermediate of 1,2;3,4-di-O-isopropylidene-β-D-psicofuranose derivatives with concomitant intramolecular trapping of the C2 hydroxymethyl group on the electrophilic nitrilium carbon. These carbohydrate-derived

• carbohydrate chemistry, they are versatile intermediates in the synthesis of N-linked glycoproteins [20][21][22]. In the context of carbohydrate chemistry, there are two possible regioisomers for glycooxazolines. Firstly, the C1 O-linked 1,2-glycooxazolines (Figure 1, 5) are formed by intramolecular

• applied them to the synthesis of α(1→5)-arabinan [38]. Thus, the exploration of carbohydrate-based oxazolines [39][40] has been limited to serve as glycosyl donors or as intermediates for N-glycan synthesis. Although, a few pyranose-based oxazoline frameworks are known [41], the corresponding furanoid

Coupling of α,α-difluoro-substituted organozinc reagents with 1-bromoalkynes

• Artem A. Zemtsov,
• Alexander D. Volodin,
• Vitalij V. Levin,
• Marina I. Struchkova and
• Alexander D. Dilman

Beilstein J. Org. Chem. 2015, 11, 2145–2149, doi:10.3762/bjoc.11.231

• , unique stereoelectronic properties of the CF2-unit may be exploited in conformational analysis [3][4][5], carbohydrate and peptide research [6][7], and reaction engineering [8][9]. Typically, the difluoromethylene fragment is created by deoxyfluorination, which requires harsh or hazardous conditions [10

Synthesis, antimicrobial and cytotoxicity evaluation of new cholesterol congeners

• Mohamed Ramadan El Sayed Aly,
• Hosam Ali Saad and
• Shams Hashim Abdel-Hafez

Beilstein J. Org. Chem. 2015, 11, 1922–1932, doi:10.3762/bjoc.11.208

• pharmacophoric conjugates through CuAAC. Basically, these conjugates included cholesterol and 1,2,3-triazole moieties, while the third, the pharmacophore, was either a chalcone, a lipophilic residue or a carbohydrate tag. These compounds were successfully prepared in good yields and characterized by NMR, MS and

Towards inhibitors of glycosyltransferases: A novel approach to the synthesis of 3-acetamido-3-deoxy-D-psicofuranose derivatives

• Maroš Bella,
• Miroslav Koóš and
• Chun-Hung Lin

Beilstein J. Org. Chem. 2015, 11, 1547–1552, doi:10.3762/bjoc.11.170

• simulate the shape and functionality of the natural substrates in the ground and/or the transition state (TS) of the enzymatic reaction [14]. In the case of GTs inhibitors, the carbohydrate mimetics that imitate the TS of the enzymatic reactions should exhibit a higher inhibition activity than the natural

• carbohydrate substrates [9][16]. Investigations of the catalytic mechanism of inverting glycosyltransferases [18] and N-acetylglucosaminyltransferase I [19] by employing ab initio calculations resulted in the design of inhibitors based on carbohydrate mimetics that simulate the transition state of the

Synthesis and spectroscopic properties of β-triazoloporphyrin–xanthone dyads

• Dileep Kumar Singh and
• Mahendra Nath

Beilstein J. Org. Chem. 2015, 11, 1434–1440, doi:10.3762/bjoc.11.155

• porphyrins with diverse functionalities such as quinolone [19], ferrocene [20], carbohydrate [21] and fullerene [22] through a copper(I)-catalyzed Huisgen–Sharpless–Meldal 1,3-dipolar cycloaddition reaction [23][24]. Some of these triazolo-bridged porphyrin dyads have shown an efficient intramolecular energy

Selected synthetic strategies to cyclophanes

• Sambasivarao Kotha,
• Mukesh E. Shirbhate and
• Gopalkrushna T. Waghule

Beilstein J. Org. Chem. 2015, 11, 1274–1331, doi:10.3762/bjoc.11.142

• cyclized product. The cleavage of the acetate groups with sodium methoxide in methanol gave the glycophane (a glycophane is a hybrid of carbohydrate and cyclophane) 143 (27%, Scheme 21). The synthesis of fullerene-related molecules with high binding affinity and/or high selectivity is an active research

• ] have reported the synthesis of a glycotriazolophane 309 (carbohydrate–triazole–cyclophane hybrid) from a sugar amino acid via a copper-catalyzed azide-alkyne cycloaddition sequence. An aminosugar acid was identified as a useful building block to generate cyclophanes. Thus, the treatment of 304 with

Are D-manno-configured Amadori products ligands of the bacterial lectin FimH?

• Tobias-Elias Gloe,
• Insa Stamer,
• Cornelia Hojnik,
• Tanja M. Wrodnigg and
• Thisbe K. Lindhorst

Beilstein J. Org. Chem. 2015, 11, 1096–1104, doi:10.3762/bjoc.11.123

• E. coli bacteria by means of molecular docking and bacterial adhesion studies. It turns out that Amadori rearrangement products have a limited activity as inhibitors of bacterial adhesion because the β-C-glycosidically linked aglycone considerably hampers complexation within the carbohydrate binding

• aromatic moiety with the so-called tyrosine gate at the entrance of the carbohydrate binding site, formed by Y48 and Y137. Additional interactions exerted by extended aglycone portions can further improve ligand affinity for FimH; for example ortho-chloro substitution of the phenyl ring (compounds 2 and 5

• consideration of Amadori products 9 and 10 as FimH ligands The complexation of MeMan (1, cf. Figure 1) as the most simple FimH ligand in the carbohydrate binding site of FimH has been described in detail [10]. It is depicted in a simplified cartoon fashion in Figure 2. The α-configured aglycone moiety (OCH3 in

Multivalency as a chemical organization and action principle

• Rainer Haag

Beilstein J. Org. Chem. 2015, 11, 848–849, doi:10.3762/bjoc.11.94

• [8][9][10][11][12] and studies the scope of multivalent lectin-glycointeractions in galectins [13], with iminosugars [14] and carbohydrate mimetics [15]. This Thematic Series in the Beilstein Journal of Organic Chemistry also investigates the enhanced multivalent binding of protein scaffolds [16

Orthogonal dual-modification of proteins for the engineering of multivalent protein scaffolds

• Michaela Mühlberg,
• Michael G. Hoesl,
• Christian Kuehne,
• Jens Dernedde,
• Nediljko Budisa and
• Christian P. R. Hackenberger

Beilstein J. Org. Chem. 2015, 11, 784–791, doi:10.3762/bjoc.11.88

• carbohydrate ligands to the protein barstar [18]. In the current study, we aimed to extend this approach to the dual modification of proteins using a combination of two chemoselective, orthogonal conjugation reactions for the introduction of glycan ligands and biotin to a protein. Our main objective in this

• conjugated with biotin using oxime ligation, by which the protein scaffold was immobilized on a streptavidin gold chip to monitor carbohydrate–protein binding studies by surface plasmon resonance (SPR). This immobilization strategy allowed easy handling and reproducible orientation, which are notable

• , different linker lengths should be probed to allow better binding of multiple carbohydrate units of one protein scaffold with multiple binding sites of one lectin molecule. Conclusion In conclusion, we succeeded in the incorporation of two unnatural functional groups, namely azides and aldehydes, into a

Glycodendrimers: tools to explore multivalent galectin-1 interactions

• Jonathan M. Cousin and
• Mary J. Cloninger

Beilstein J. Org. Chem. 2015, 11, 739–747, doi:10.3762/bjoc.11.84

• activity through multivalent interactions with cell surface glycoconjugates [1][2][3][4]. Galectin-1 is a non-covalent homodimer that belongs to a family of β-galactoside binding proteins called galectins [5][6][7]. The monomeric units are oriented such that the two carbohydrate recognition domains are

• very effectively used to organize proteins into biologically active arrays. Results Nanoparticle formation Poly(amidoamine) (PAMAM) dendrimers were used as a multivalent framework to study multivalent protein–carbohydrate interactions. The PAMAM structure is shown in Figure 2a. Second, third, fourth

• lactose endgroups on the dendrimers and the carbohydrate recognition site of galectin-1 occurs when nanoparticles are formed (Figure 6). Control experiments were performed with different functional groups on the multivalent framework. No aggregates were detected upon the addition of a polyhydroxylated

Probing multivalency in ligand–receptor-mediated adhesion of soft, biomimetic interfaces

• Stephan Schmidt,
• Hanqing Wang,
• Daniel Pussak,
• Simone Mosca and
• Laura Hartmann

Beilstein J. Org. Chem. 2015, 11, 720–729, doi:10.3762/bjoc.11.82

• , Institut für Organische und Makromolekulare Chemie, Universitätsstr. 1, 40225 Düsseldorf, Germany 10.3762/bjoc.11.82 Abstract Many biological functions at cell level are mediated by the glycocalyx, a dense carbohydrate-presenting layer. In this layer specific interactions between carbohydrate ligands and

• a concanavalin A (ConA) layer via poly(ethylene glycol)-(PEG)-based soft colloidal probes (SCPs). Special emphasis is on the dependence of multivalent presentation and density of carbohydrate units on specific adhesion. Consequently, we first present a synthetic strategy that allows for controlled

• type. Remarkably, the results indicated the absence of a molecular-level enhancement of mannose/ConA interaction due to chelate- or subsite-binding. The results seem to support the fact that weak carbohydrate interactions at mechanically flexible interfaces hardly undergo multivalent binding but are

DNA display of glycoconjugates to emulate oligomeric interactions of glycans

• Alexandre Novoa and
• Nicolas Winssinger

Beilstein J. Org. Chem. 2015, 11, 707–719, doi:10.3762/bjoc.11.81

• Alexandre Novoa Nicolas Winssinger Department of Organic Chemistry, NCCR Chemical Biology, University of Geneva 30, quai Ernest Ansermet, 1211 Geneva, Switzerland 10.3762/bjoc.11.81 Abstract Glycans (carbohydrate portion of glycoproteins and glycolipids) frequently exert their function through

• oligomeric interactions involving multiple carbohydrate units. In efforts to recapitulate the diverse spatial arrangements of the carbohydrate units, assemblies based on hybridization of nucleic acid conjugates have been used to display simplified ligands with tailored interligand distances and valences. The

• ]. The first method reported was leveraged on a nucleophilic coupling between readily available glycosyl thiol (obtained in one step by treatment of a native carbohydrate with Lawesson’s reagent [37]) and a chloroacetamide-functionalized PNA (Scheme 7) [38][39]. Using this method, we have shown that

Synthesis of carbohydrate-scaffolded thymine glycoconjugates to organize multivalency

• Anna K. Ciuk and
• Thisbe K. Lindhorst

Beilstein J. Org. Chem. 2015, 11, 668–674, doi:10.3762/bjoc.11.75

• Anna K. Ciuk Thisbe K. Lindhorst Christiana Albertina University of Kiel, Otto Diels Institute of Organic Chemistry, Otto-Hahn-Platz 3/4, D-24118 Kiel, Germany, Fax: +49 431 8807410 10.3762/bjoc.11.75 Abstract Multivalency effects are essential in carbohydrate recognition processes as occurring

• on the cell surface. Thus many synthetic multivalent glycoconjugates have been developed as important tools for glycobiological research. We are expanding this collection of molecules by the introduction of carbohydrate-scaffolded divalent glycothymine derivatives that can be intramolecularily

• ] photocycloaddition; carbohydrate scaffolds; multivalency; thymine glycoconjugates; Introduction Multivalency of molecular interactions is a fundamental principle in carbohydrate recognition. It influences the avidity and specificity of carbohydrate–protein interactions as well as it enables supramolecular changes

Design, synthesis and photochemical properties of the first examples of iminosugar clusters based on fluorescent cores

• Mathieu L. Lepage,
• Antoine Mirloup,
• Manon Ripoll,
• Fabien Stauffert,
• Anne Bodlenner,
• Raymond Ziessel and
• Philippe Compain

Beilstein J. Org. Chem. 2015, 11, 659–667, doi:10.3762/bjoc.11.74

• the endocyclic oxygen have been reported in the literature [1][2]. Iminosugars are mainly known to be inhibitors of a number of carbohydrate-processing enzymes with an emphasis on glycosidases [1][2]. In the early 2000’s, iminosugars were, remarkably, found to inhibit metalloproteinases [3], protein

Synthesis of multivalent carbohydrate mimetics with aminopolyol end groups and their evaluation as L-selectin inhibitors

• Joana Salta,
• Jens Dernedde and
• Hans-Ulrich Reissig

Beilstein J. Org. Chem. 2015, 11, 638–646, doi:10.3762/bjoc.11.72

• Platz 1, D-13353 Berlin, Germany 10.3762/bjoc.11.72 Abstract In this article a series of divalent and trivalent carbohydrate mimetics on the basis of an enantiopure aminopyran and of serinol is described. These aminopolyols are connected by amide bonds to carboxylic acid derived spacer units either by

• compounds could not be tested as L-selectin inhibitor by SPR due to their insolubility in water, nevertheless, a divalent and a trivalent amide showed surprisingly good activities with IC50 values in the low micromolar range. Keywords: aminopolyols; carbohydrate mimetics; carboxylic acid amides; inhibition

• ; multivalency; selectins; sulfation; Introduction In a series of publications [1][2][3][4][5][6] our group reported on the syntheses of carbohydrate mimetics [7][8][9][10][11] that are based on aminopyrans, aminooxepanes or other aminopolyols. These compounds and their conjugates were prepared to be examined

Automated solid-phase synthesis of oligosaccharides containing sialic acids

• Chian-Hui Lai,
• Heung Sik Hahm,
• Chien-Fu Liang and
• Peter H. Seeberger

Beilstein J. Org. Chem. 2015, 11, 617–621, doi:10.3762/bjoc.11.69

• carbohydrate antigens (TACAs) such as the sialyl-Tn antigen (sTn) [2]. Neu5Ac is often the terminal residue and is usually linked via an α-(2,3) or α-(2,6) linkage to galactose (Gal) (Figure 1) [3]. Automated glycan assembly enables rapid access to structurally defined oligosaccharides [4][5] including

• synthesis in the future as well. The tumor associated sTn carbohydrate antigen (Neu5Ac-α(2,6)GalNAc-α(1,1)linker) disaccharide 17, that resembles the sTn antigen glycan framework (Neu5Ac-α(2,6)GalNAc-α(1,1)Ser/Thr) was synthesized. In order to install the cis-glycoside formed by the union of the