Secondary metabolites of Bacillus subtilis impact the assembly of soil-derived semisynthetic bacterial communities

• Heiko T. Kiesewalter,
• Carlos N. Lozano-Andrade,
• Mikael L. Strube and
• Ákos T. Kovács

Beilstein J. Org. Chem. 2020, 16, 2983–2998, doi:10.3762/bjoc.16.248

• reads were assigned to the respective samples with an average of 12,083 reads per sample (range: 751 to 34,802; Table S3, Supporting Information File 1). The 16S rRNA reference sequences with a 99% identity criterion obtained from the SILVA database release 132 were trimmed to the V3-V4 region, bound by

Selected peptide-based fluorescent probes for biological applications

• Debabrata Maity

Beilstein J. Org. Chem. 2020, 16, 2971–2982, doi:10.3762/bjoc.16.247

• which have affinity for the CB[8] cavity. These substrates easily displace 6 from the CB[8] cavity and release 6 which folds again to form a pyrene excimer, which allows for the ratiometric fluorescence monitoring of those substrates. Upon screening methyl ester derivatives of hydrophobic amino acids

Incorporation of a metal-mediated base pair into an ATP aptamer – using silver(I) ions to modulate aptamer function

• Marius H. Heddinga and
• Jens Müller

Beilstein J. Org. Chem. 2020, 16, 2870–2879, doi:10.3762/bjoc.16.236

• to release a DNA-bound cargo (in the form of small organic molecules) [10]. Similarly, metal ions can trigger DNA folding into a catalytically active topology [11][12]. Metal-mediated base pairs are artificial base pairs in which hydrogen bonds between the complementary nucleobases are formally

Using multiple self-sorting for switching functions in discrete multicomponent systems

• Amit Ghosh and
• Michael Schmittel

Beilstein J. Org. Chem. 2020, 16, 2831–2853, doi:10.3762/bjoc.16.233

• supramolecule-to-supramolecule transformations, involving functions such as chemical purification, controllable guest uptake and release, and reagent storage along with catalysis [47]. However, neither of the examples in this compilation proved to be reversible. In the present minireview, we highlight the

• release of DABCO using a double self-sorting protocol [54]. Schmittel and co-workers reported on the three-component rectangle [Cu4(16)2(17)2]4+ (SelfSORT-I) that rearranged into the four-component sandwich complex [Cu2(16)(17)(18)]2+ (Figure 8) upon the addition of DABCO (SelfSORT-II). A full

• innovative catch–release system with multiple functions combined the ON/OFF-adjustment of silver(I) catalysis and fluorescence monitoring [59]. Actually, the ratiometric luminescence response allowed the exact monitoring of the catalytic activity. In the initial incomplete self-sorting (state SelfSORT-I

Easy access to a carbohydrate-based template for stimuli-responsive surfactants

• Thomas Holmstrøm,
• Daniel Raydan and
• Christian Marcus Pedersen

Beilstein J. Org. Chem. 2020, 16, 2788–2794, doi:10.3762/bjoc.16.229

• -delivery system owing to their size and the ability to carry drugs, both in the polar (core) or apolar (lipid bilayer) interior [4][5]. A challenge in liposome-based drug delivery systems is to release the drug at the place of function. This challenge has led to the development of stimuli-responsive

Optical detection of di- and triphosphate anions with mixed monolayer-protected gold nanoparticles containing zinc(II)–dipicolylamine complexes

• Lena Reinke,
• Julia Bartl,
• Marcus Koch and
• Stefan Kubik

Beilstein J. Org. Chem. 2020, 16, 2687–2700, doi:10.3762/bjoc.16.219

• sensing [1][2][3][4][5][6]. The analyte can be detected by relying on the enhancement of the Raman scattering intensity, if it is bound close to the gold surface (surface enhanced Raman scattering, SERS), for example, or by the release from the metal surface of a chromophore the fluorescence of which is

Synthesis and characterization of S,N-heterotetracenes

• Astrid Vogt,
• Florian Henne,
• Christoph Wetzel,
• Elena Mena-Osteritz and
• Peter Bäuerle

Beilstein J. Org. Chem. 2020, 16, 2636–2644, doi:10.3762/bjoc.16.214

• step, an azide group was introduced to 10 by lithiation with n-BuLi followed by the reaction with tosyl azide giving azide 11 in an excellent yield of 92%. Thermally induced ring-closure under release of nitrogen and formation of a nitrene intermediate was achieved by refluxing azide 11 in

Activation of pentafluoropropane isomers at a nanoscopic aluminum chlorofluoride: hydrodefluorination versus dehydrofluorination

• Maëva-Charlotte Kervarec,
• Thomas Braun,
• Mike Ahrens and
• Erhard Kemnitz

Beilstein J. Org. Chem. 2020, 16, 2623–2635, doi:10.3762/bjoc.16.213

• generated from 1 at the ACF surface. Alternatively, the aromatic solvent can also attack the carbenium-like species, producing a zwitterionic Wheeland intermediate, which can release the Friedel–Crafts product 11 and DF to regenerate the catalyst (Scheme 3, right). Although a hydrogen source was not needed

Anion exchange resins in phosphate form as versatile carriers for the reactions catalyzed by nucleoside phosphorylases

• Julia N. Artsemyeva,
• Ekaterina A. Remeeva,
• Tatiana N. Buravskaya,
• Irina D. Konstantinova,
• Roman S. Esipov,
• Anatoly I. Miroshnikov,
• Natalia M. Litvinko and
• Igor A. Mikhailopulo

Beilstein J. Org. Chem. 2020, 16, 2607–2622, doi:10.3762/bjoc.16.212

• riboside and cladribine. A number of anion exchange resins have been tested, and as a result, it was found that QAE Sephadex A-25-nPi can effectively perform two functions, viz., serve as a donor of inorganic phosphate in the phosphorolysis reaction, and also bind PF-1Pi and release it in the nucleoside

Leveraging glycomics data in glycoprotein 3D structure validation with Privateer

• Haroldas Bagdonas,
• Daniel Ungar and
• Jon Agirre

Beilstein J. Org. Chem. 2020, 16, 2523–2533, doi:10.3762/bjoc.16.204

• carbohydrate validation tool available as part of the CCP4i2 crystallographic structure solution pipeline [38]. In its first release, Privateer was able to perform stereochemical and conformational validation of pyranosides, analyse the glycan fit to electron density map and offered tools for restraining a

• glycoproteins [42]. The mass spectrometric analysis of glycosylated proteins can be with (glycomics) or without (glycoproteomics) the release of oligosaccharides from the glycoprotein. Usually, glycomics and glycoproteomics experiments are carried out together to obtain a complete description of the

NMR Spectroscopy of supramolecular chemistry on protein surfaces

• Peter Bayer,
• Anja Matena and
• Christine Beuck

Beilstein J. Org. Chem. 2020, 16, 2505–2522, doi:10.3762/bjoc.16.203

• complex. Competition of the ligand for the peptide resulted in release of unbound PHD domain, which is evident from the signals shifting back towards the position of the free protein in the absence of peptide. The Crowley lab has conducted multiple binding model studies comparing binding of sulfonato and

Recent developments in enantioselective photocatalysis

• Callum Prentice,
• James Morrisson,
• Andrew D. Smith and
• Eli Zysman-Colman

Beilstein J. Org. Chem. 2020, 16, 2363–2441, doi:10.3762/bjoc.16.197

• catalyst 105, to generate intermediate 106, which can then turn over the NHC and release the desired acylated products 107 in good yields and enantioselectivities (13 examples, up to 96:4 er). There has been little development of enantioselective reactions using NHCs in photocatalysis since this work

A proposed sustainability index for synthesis plans based on input provenance and output fate: application to academic and industrial synthesis plans for vanillin as a case study

• John Andraos

Beilstein J. Org. Chem. 2020, 16, 2346–2362, doi:10.3762/bjoc.16.196

• than can be chemically converted to starting materials, or byproducts that can be reclaimed for use in other chemical processes. Non-valorized waste outputs are those that will end up as “dead waste” whether or not they undergo treatment before release into the four main environmental compartments of

Host–guest interaction of cucurbit[8]uril with oroxin A and its effect on the properties of oroxin A

• Zhishu Zeng,
• Jun Xie,
• Guangyan Luo,
• Zhu Tao and
• Qianjun Zhang

Beilstein J. Org. Chem. 2020, 16, 2332–2337, doi:10.3762/bjoc.16.194

• properties of OA was investigated through comparative experiments. The solubility of OA in water increased 22.47-fold when the concentration of Q[8] was 1 × 10−4 mol·L−1. Q[8] hardly affected the antioxidant capacity of OA, while the cumulative release of OA in gastric juice increased 2.3-fold after forming

• and 4.80 × 10−6 mol·L−1, respectively, which indicates that Q[8] did not affect the antioxidant activity of OA. Drug release in vitro Figure 8 shows the cumulative release of the OA and the OA@Q[8] inclusion complex in artificial gastric juice (pH 1.2) and artificial intestinal juice (pH 6.8). It can

• be seen from Figure 8A that release of OA@Q[8] inclusion compound in artificial gastric juice was much higher than that of OA after 12 h. The cumulative release of OA and OA@Q[8] reached 11.25% and 27.15%, respectively, after 12 h. After 48 h, Q[8] increased the measured cumulative release of OA in

Naphthalene diimide bis-guanidinio-carbonyl-pyrrole as a pH-switchable threading DNA intercalator

• Poulami Jana,
• Filip Šupljika,
• Carsten Schmuck and
• Ivo Piantanida

Beilstein J. Org. Chem. 2020, 16, 2201–2211, doi:10.3762/bjoc.16.185

• energetically favourable non-covalent interactions, hydrogen bonds, and van der Waals interactions formed between the DNA/RNA and solvent, and between the compound 4 and solvent. The large positive entropy changes suggest solvent release upon binding, which makes a favourable contribution to the reaction Gibbs

Photosensitized direct C–H fluorination and trifluoromethylation in organic synthesis

• Shahboz Yakubov and
• Joshua P. Barham

Beilstein J. Org. Chem. 2020, 16, 2151–2192, doi:10.3762/bjoc.16.183

Efficient [(NHC)Au(NTf₂)]-catalyzed hydrohydrazidation of terminal and internal alkynes

• Maximillian Heidrich and
• Herbert Plenio

Beilstein J. Org. Chem. 2020, 16, 2080–2086, doi:10.3762/bjoc.16.175

• ] leads to the activation of the triple bond for a nucleophilic attack, generating a vinylgold complex [39][40]. This is followed by the substitution of LAu+ with an electrophile E, corresponding (for E = H+) to a protodeauration and is leading to the release of the desired organic product [41]. The

Automated high-content imaging for cellular uptake, from the Schmuck cation to the latest cyclic oligochalcogenides

• Rémi Martinent,
• Javier López-Andarias,
• Dimitri Moreau,
• Yangyang Cheng,
• Naomi Sakai and
• Stefan Matile

Beilstein J. Org. Chem. 2020, 16, 2007–2016, doi:10.3762/bjoc.16.167

• on the endosomal uptake and release. However, a better binding affinity to DNA does not necessarily mean a higher DNA transfection efficiency. As an example, two GCP-modified peptide tweezers 14 with nanomolar dissociation constants, identified by the high-throughput screening of a combinatorial

Synthesis of monophosphorylated lipid A precursors using 2-naphthylmethyl ether as a protecting group

• Jundi Xue,
• Ziyi Han,
• Gen Li,
• Khalisha A. Emmanuel,
• Cynthia L. McManus,
• Qiang Sui,
• Dongmian Ge,
• Qi Gao and
• Li Cai

Beilstein J. Org. Chem. 2020, 16, 1955–1962, doi:10.3762/bjoc.16.162

• localized infections, the occurrence of severe sepsis causes systemic release of inflammation mediators and stimulatory molecules, thus leading to various pathophysiological effects [6]. Accordingly, structure–activity relationship studies of lipid A which examine or facilitate the examination of how one

Synergy between supported ionic liquid-like phases and immobilized palladium N-heterocyclic carbene–phosphine complexes for the Negishi reaction under flow conditions

• Edgar Peris,
• Raúl Porcar,
• María Macia,
• Jesús Alcázar,
• Eduardo García-Verdugo and
• Santiago V. Luis

Beilstein J. Org. Chem. 2020, 16, 1924–1935, doi:10.3762/bjoc.16.159

• of the NHC–Pd catalyst and the SILLPs is a key factor for the optimization of the release and catch mechanism leading to a catalytic system easily recoverable and reusable for a large number of catalytic cycles enhancing the long-term catalytic performance. Keywords: immobilized catalyst; Negishi

• Organ and co-workers, who have developed silica-immobilized Pd–PEPPSI–IPr–SiO2 [31] and Pd–PEPPSI–IPent–SiO2 [32] catalysts. They observed a gradual catalyst deactivation due to the slow release of palladium over time. However, the high level of catalyst activity, especially for Pd–PEPPSI–IPent–SiO2

• SILLPs is a key factor for the optimization of release and catch systems leading to easily recoverable and reusable catalysts working for a large number of catalytic cycles without any loss in performance [33][34]. In this regard, the effect of the presence of different SILLPs in the catalytic behavior

When metal-catalyzed C–H functionalization meets visible-light photocatalysis

• Lucas Guillemard and
• Joanna Wencel-Delord

Beilstein J. Org. Chem. 2020, 16, 1754–1804, doi:10.3762/bjoc.16.147

Tuneable access to indole, indolone, and cinnoline derivatives from a common 1,4-diketone Michael acceptor

• Dalel El-Marrouki,
• Sabrina Touchet,
• Abderrahmen Abdelli,
• Hédi M’Rabet,
• Mohamed Lotfi Efrit and
• Philippe C. Gros

Beilstein J. Org. Chem. 2020, 16, 1722–1731, doi:10.3762/bjoc.16.144

• secondary amine and the nonconjugated carbonyl unit. Next, an intramolecular 1,2-addition to the Michael acceptor part of the molecule, previously activated by acid catalysis, takes place (after an imine–enamine equilibrium for the indole pathway), followed by a prototropy, the release of a water molecule

One-pot synthesis of isosorbide from cellulose or lignocellulosic biomass: a challenge?

• Isaline Bonnin,
• Raphaël Mereau,
• Thierry Tassaing and
• Karine De Oliveira Vigier

Beilstein J. Org. Chem. 2020, 16, 1713–1721, doi:10.3762/bjoc.16.143

• sorbitan from 29% to 22% and from 5% to 3%, respectively. A similar tendency was observed in the presence of boron phosphate. This was due to the slow dissolution of boron phosphate in aqueous solution implying a release of H+ according to reaction time. They also observe an increase of isosorbide

Pauson–Khand reaction of fluorinated compounds

• Jorge Escorihuela,
• Daniel M. Sedgwick,
• Alberto Llobat,
• Mercedes Medio-Simón,
• Pablo Barrio and
• Santos Fustero

Beilstein J. Org. Chem. 2020, 16, 1662–1682, doi:10.3762/bjoc.16.138

• stereochemical outcome of the overall process. A carbon monoxide ligand then undergoes migratory insertion into one of the Co–C bonds in cobaltacycle V, followed by reductive elimination to release the final product (Scheme 3). As mentioned above, the regiochemistry of this transformation is, in most cases

Mechanochemical green synthesis of hyper-crosslinked cyclodextrin polymers

• Alberto Rubin Pedrazzo,
• Fabrizio Caldera,
• Marco Zanetti,
• Silvia Lucia Appleton,
• Nilesh Kumar Dhakar and
• Francesco Trotta

Beilstein J. Org. Chem. 2020, 16, 1554–1563, doi:10.3762/bjoc.16.127

• example, drug-delivery systems [3][4][5]: together with their capability of hosting drugs, they are biocompatible and nontoxic. In the last few years nanosponges were employed to encapsulate and release a wide variety of drugs [6][7], associated with an improvement in bioavailability and release kinetics

• , as the amount of nitrogen after PSE using acetone dramatically decreased due to release of the IMH byproduct entrapped in the NS network. Furthermore, it could be stated that after about 8 hours, it was possible to eliminate almost completely both IMH and IM, using only water, from all nanomaterials

• nearly quantitative yields, with the release of carbon dioxide and formation of IMH. The reaction kinetics of alcohols with N,N'-carbonyldiimidazole were generally slower, so the presence of reactive IM moieties may be particularly interesting for an easy functionalization via reaction with nucleophilic